MD07G1063400.v1.1

Ubiquinone biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0009366
Physical Location & Seq
Reverse (-)
5943117 .. 5945190
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1063400.v1.1.491

Sequence Viewer

Length: 909 bp
ATGTATGGATCCACAGCGAAGCGGCTTCTCCAGCACTTTGGCGCAACGTTGGTTAGCAGTAGCGGTACCCATATGATTCGATTCCGTCCTCTTCAATCCCTTGTTAGTCGTTCTCACTTTTCCACCACTGTGAACTCTGAACCATTTGCCAATAAACCCCCTAGTTTTGCGAATTCCACATCATCATATGCCGATGAATTCCCTAATATTTCGAATTCCTCGTCGTCAACAGCCGATCATACTAGGAGATCGAGAGTGGAATACCAAGATGAGCAAGCTCGCGTGCTCCAAGCCTCACTTCCGCATGTGATAAGGTTGGGATGGAGTGAAGCTGCGATGATTGCTGGTGCGAAGGATATTGGTGTCTCTGCATCTATTGTCGGATCATTTCCAAGGAAAGAGGGAATGTTGGTTGAGTTTTTCATGGATGATTGTTTGCAGAGGCTTATTGATAGAATCGAGTCCAGTCCAGATGAGCTGAAAAGTTTGATACCCAGTGACCGTATCACCAAGCTTATCCGCATTCGCTTAGAAATGCAGTCACCCTTCATATCGAAATGGCCTCAAGCTCTTAGCATCCAGGCACAACCAGTGAACGTCCCCACGAGCTTTAAGCAGAGGGCGATGCTTGTGGATGAGATCTGGCATGGTGCTGGCGACGACACCGCTGATTTTCAGTGGTATGTGAAGCGGACTGTCCTTGGAGGAATATACTCCACAACTGAGATTTACATGCTTACTGACAATTCCCCAGATTTTCGTGATACATGGGCATTCTTGGATGATCGGGTGAAAGATGCTTTTGACTTGAAGAAAACCACTCAAGAGGCGACATACTTGGCAGAAGCTGTTGGTGCTGGGATGGGGACTTCTTTGCAAGGATTTGTGAAGAGAGTCTTTCAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COQ9

Protein Analysis

303

Amino Acids

33.74

Weight (kDa)

6.61

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COQ9 PF08511 200 - 270 7.9e-29 COQ9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 1 cut(s) 282
AciI CCGC 6 cut(s) 22, 63, 302, 520, 666, 691
AclI AACGTT 1 cut(s) 47
AclWI GGATC 3 cut(s) 3, 16, 391
AcsI RAATTY 3 cut(s) 172, 197, 214
AfaI GTAC 1 cut(s) 67
AgsI TTSAA 2 cut(s) 95, 811
AjnI CCWGG 1 cut(s) 579
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 7 cut(s) 278, 332, 478, 514, 569, 609, 848
AluI AGCT 7 cut(s) 278, 332, 478, 514, 569, 609, 848
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 3 cut(s) 3, 16, 391
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 1 cut(s) 560
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 3 cut(s) 172, 197, 214
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
Asp718I GGTACC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 499, 534, 802
AsuII TTCGAA 1 cut(s) 212
BamHI GGATCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 65
BauI CACGAG 1 cut(s) 604
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 319
BccI CCATC 2 cut(s) 315, 856
BciT130I CCWGG 1 cut(s) 581
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 2 cut(s) 162, 243
BglII AGATCT 1 cut(s) 639
BisI GCNGC 2 cut(s) 23, 333
BlsI GCNGC 2 cut(s) 24, 334
Bme1390I CCNGG 1 cut(s) 581
BmiI GGNNCC 2 cut(s) 10, 67
BmrFI CCNGG 1 cut(s) 581
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 4 cut(s) 380, 585, 615, 787
BmuI ACTGGG 1 cut(s) 489
BpmI CTGGAG 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 212
BpuEI CTTGAG 2 cut(s) 549, 807
BsaJI CCNNGG 2 cut(s) 392, 700
Bse1I ACTGG 3 cut(s) 465, 495, 590
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 2 cut(s) 392, 700
BseGI GGATG 6 cut(s) 326, 433, 576, 640, 787, 867
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 3 cut(s) 465, 495, 590
BseXI GCAGC 1 cut(s) 319
BseYI CCCAGC 1 cut(s) 857
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 562
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 288
BslFI GGGAC 2 cut(s) 584, 880
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 2 cut(s) 584, 880
BsmI GAATGC 2 cut(s) 522, 773
BsnI GGCC 1 cut(s) 562
Bsp119I TTCGAA 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 6 cut(s) 8, 235, 248, 383, 639, 784
BspACI CCGC 6 cut(s) 22, 63, 302, 520, 666, 691
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 1 cut(s) 715
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 10, 67
BspPI GGATC 3 cut(s) 3, 16, 391
BspT104I TTCGAA 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 65
BsrI ACTGG 3 cut(s) 465, 495, 590
BssECI CCNNGG 2 cut(s) 392, 700
BssMI GATC 6 cut(s) 8, 235, 248, 383, 639, 784
BssSI CACGAG 1 cut(s) 604
BssT1I CCWWGG 2 cut(s) 392, 700
Bst2BI CACGAG 1 cut(s) 604
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 3 cut(s) 130, 503, 697
Bst6I CTCTTC 2 cut(s) 96, 884
BstBI TTCGAA 1 cut(s) 212
BstC8I GCNNGC 4 cut(s) 276, 280, 284, 655
BstDEI CTNAG 3 cut(s) 529, 572, 723
BstF5I GGATG 6 cut(s) 326, 433, 576, 640, 787, 867
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 6 cut(s) 11, 238, 251, 386, 642, 787
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 6 cut(s) 8, 235, 248, 383, 639, 784
BstMWI GCNNNNNNNGC 3 cut(s) 31, 341, 854
BstNI CCWGG 1 cut(s) 581
BstNSI RCATGY 2 cut(s) 308, 736
BstSCI CCNGG 1 cut(s) 579
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 319
BstX2I RGATCY 2 cut(s) 8, 639
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 2 cut(s) 8, 639
BsuRI GGCC 1 cut(s) 562
BtgZI GCGATG 2 cut(s) 350, 638
BtsCI GGATG 6 cut(s) 326, 433, 576, 640, 787, 867
BtsIMutI CAGTG 4 cut(s) 126, 502, 597, 683
Cac8I GCNNGC 4 cut(s) 276, 280, 284, 655
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 66
CviAII CATG 5 cut(s) 305, 424, 647, 733, 768
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 3 cut(s) 529, 572, 723
DpnI GATC 6 cut(s) 10, 237, 250, 385, 641, 786
DpnII GATC 6 cut(s) 8, 235, 248, 383, 639, 784
Eam1104I CTCTTC 2 cut(s) 96, 884
EarI CTCTTC 2 cut(s) 96, 884
Eco130I CCWWGG 2 cut(s) 392, 700
EcoRI GAATTC 3 cut(s) 172, 197, 214
EcoRII CCWGG 1 cut(s) 579
EcoT14I CCWWGG 2 cut(s) 392, 700
ErhI CCWWGG 2 cut(s) 392, 700
FaeI CATG 5 cut(s) 308, 427, 650, 736, 771
FalI AAGNNNNNCTT 3 cut(s) 282, 314, 881
FaqI GGGAC 2 cut(s) 584, 880
FatI CATG 5 cut(s) 304, 423, 646, 732, 767
FauNDI CATATG 2 cut(s) 72, 187
Fnu4HI GCNGC 2 cut(s) 23, 333
FokI GGATG 6 cut(s) 333, 440, 563, 647, 794, 874
Fsp4HI GCNGC 2 cut(s) 23, 333
FspBI CTAG 2 cut(s) 162, 243
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 23, 333
GsaI CCCAGC 1 cut(s) 861
GsuI CTGGAG 1 cut(s) 14
HaeIII GGCC 1 cut(s) 562
HhaI GCGC 1 cut(s) 44
Hin1II CATG 5 cut(s) 308, 427, 650, 736, 771
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 5 cut(s) 76, 81, 456, 461, 894
HphI GGTGA 3 cut(s) 499, 534, 802
Hpy166II GTNNAC 3 cut(s) 133, 228, 595
Hpy188I TCNGA 2 cut(s) 139, 383
Hpy188III TCNNGA 4 cut(s) 252, 470, 761, 824
Hpy8I GTNNAC 3 cut(s) 133, 228, 595
Hpy99I CGWCG 2 cut(s) 226, 662
HpyAV CCTTC 2 cut(s) 346, 556
HpyCH4III ACNGT 3 cut(s) 130, 503, 697
HpyCH4IV ACGT 2 cut(s) 47, 597
HpyCH4V TGCA 4 cut(s) 371, 439, 538, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 341, 854
HpyF3I CTNAG 3 cut(s) 529, 572, 723
HpySE526I ACGT 2 cut(s) 47, 597
Hsp92II CATG 5 cut(s) 308, 427, 650, 736, 771
HspAI GCGC 1 cut(s) 42
KpnI GGTACC 1 cut(s) 69
Kzo9I GATC 6 cut(s) 8, 235, 248, 383, 639, 784
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 4 cut(s) 380, 585, 615, 787
MaeI CTAG 2 cut(s) 162, 243
MaeII ACGT 2 cut(s) 47, 597
MaeIII GTNAC 2 cut(s) 497, 540
MalI GATC 6 cut(s) 10, 237, 250, 385, 641, 786
MboI GATC 6 cut(s) 8, 235, 248, 383, 639, 784
MboII GAAGA 3 cut(s) 83, 823, 901
MflI RGATCY 2 cut(s) 8, 639
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 4 cut(s) 172, 197, 214, 745
MlyI GAGTC 2 cut(s) 470, 903
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 9 cut(s) 99, 229, 304, 394, 435, 573, 612, 698, 820
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 668
MspR9I CCNGG 1 cut(s) 581
Mva1269I GAATGC 2 cut(s) 522, 773
MvaI CCWGG 1 cut(s) 581
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 31, 341, 854
NdeI CATATG 2 cut(s) 72, 187
NdeII GATC 6 cut(s) 8, 235, 248, 383, 639, 784
NlaIII CATG 5 cut(s) 308, 427, 650, 736, 771
NlaIV GGNNCC 2 cut(s) 10, 67
NmuCI GTSAC 2 cut(s) 497, 540
NspI RCATGY 2 cut(s) 308, 736
NspV TTCGAA 1 cut(s) 212
OliI CACNNNNGTG 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PctI GAATGC 2 cut(s) 522, 773
PfeI GAWTC 3 cut(s) 76, 81, 456
PkrI GCNGC 2 cut(s) 24, 334
PleI GAGTC 2 cut(s) 469, 902
PpsI GAGTC 2 cut(s) 469, 902
Psp1406I AACGTT 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 579
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 2 cut(s) 10, 67
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 2 cut(s) 8, 639
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 2 cut(s) 23, 333
Sau3AI GATC 6 cut(s) 8, 235, 248, 383, 639, 784
SchI GAGTC 2 cut(s) 470, 903
ScrFI CCNGG 1 cut(s) 581
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 4 cut(s) 380, 585, 615, 787
SfuI TTCGAA 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 564, 822
SmoI CTYRAG 2 cut(s) 564, 822
Sse9I AATT 4 cut(s) 172, 197, 214, 745
SsiI CCGC 6 cut(s) 22, 63, 302, 520, 666, 691
SspI AATATT 1 cut(s) 208
SspMI CTAG 2 cut(s) 162, 243
StyD4I CCNGG 1 cut(s) 579
StyI CCWWGG 2 cut(s) 392, 700
TaaI ACNGT 3 cut(s) 130, 503, 697
TaiI ACGT 2 cut(s) 50, 600
TaqI TCGA 5 cut(s) 79, 212, 251, 459, 554
TasI AATT 4 cut(s) 172, 197, 214, 745
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 3 cut(s) 76, 81, 456
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 4 cut(s) 133, 502, 597, 683
TseFI GTSAC 2 cut(s) 497, 540
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 2 cut(s) 497, 540
TspDTI ATGAA 3 cut(s) 210, 412, 538
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 4 cut(s) 133, 502, 597, 683
XapI RAATTY 3 cut(s) 172, 197, 214
XceI RCATGY 2 cut(s) 308, 736
XspI CTAG 2 cut(s) 162, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.