MD02G1257100.v1.1

Ubiquinone biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0009366
Physical Location & Seq
Forward (+)
30953246 .. 30955453
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1257100.v1.1.491

Sequence Viewer

Length: 909 bp
ATGTACAGATCCACAACGAATCGGCTTCTCCGGCTCTTTGGCGCACCCTTGGTTAGCAATAGCAATATCCATATGCTTCGGTTCCGTCCCCTTCAATCCCTCGTTAGTCGTACTCACTTTTCCACCACTGTGAACTCTGAACCATTTGTTGATAAACCCCCTAGTTTTGCAAATTCCACATCATCAACGGCCGATGAATTCCCTAATGTTTCGAATTCCACGTCATCAACAGCCAGTCACACGAGGAAGCCGAGAGTAGAATACCAAGATGAGCAAGCTCGCGTGCTCCAGGCCTCACTTCCCCATGTGATAAGGTTGGGATGGAGCGAAGCCGCAATGATTGCTGGTGCAAGGGATGTTGGTGTGTCTCCATCTATTGTCGGATCATTTCCAAGGAAAGAGGGCACCCTGGTGGAGTTTTTCATGGATGACTGTTTGCAGAGGCTTATTGATAGAATCGAGTCCAGTACAGATGAGCTGAAAAGTTTGATACTCAGTGACCGTATCACCAAGCTTATCCGTATTCGCTTAGAAATGCAGGCACCCTACATATCGAAATGGCCTCAAGCTCTTAGCATCCAGGCACAACCAGTGAATGTTCCCACAAGTTTTAAGCAAAGGGCGATGCTTGTGGATGAGATCTGGCATGGTGCTGGCGACGACACCGCTGATTTTCAGTGGTATGTGAAGCGGACTGTCCTCGGAGGAATATACTCCACAACTGAGATTTACATGCTTACCGACGATTCCCCAGATTTTCGTGATACATGGGCATTCTTGGATAATCGGGTGAAAGATGCTTTTGACTTGAAGAAAACCATTCAGGAGGCAACATACTTGGCAGAAGCTGTCGGTGCTGGGATGGGGACTTCTTTCCAAGGATTTGTGAAGAGAGTCTTTCGGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COQ9

Protein Analysis

303

Amino Acids

33.99

Weight (kDa)

7.85

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COQ9 PF08511 200 - 270 1.4e-28 COQ9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 404, 541
AccII CGCG 1 cut(s) 282
AciI CCGC 3 cut(s) 333, 666, 691
AclWI GGATC 2 cut(s) 3, 391
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 3 cut(s) 172, 197, 214
AfaI GTAC 3 cut(s) 5, 112, 469
AgsI TTSAA 2 cut(s) 95, 811
AjiI CACGTC 1 cut(s) 222
AjnI CCWGG 3 cut(s) 288, 408, 579
AleI CACNNNNGTG 2 cut(s) 128, 410
AluBI AGCT 5 cut(s) 278, 478, 514, 569, 848
AluI AGCT 5 cut(s) 278, 478, 514, 569, 848
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 2 cut(s) 3, 391
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 3 cut(s) 189, 291, 560
ApoI RAATTY 3 cut(s) 172, 197, 214
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AspLEI GCGC 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 499, 802
AsuII TTCGAA 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 407
BanI GGYRCC 2 cut(s) 404, 541
BauI CACGAG 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 288
BccI CCATC 3 cut(s) 315, 379, 856
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 3 cut(s) 290, 410, 581
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 639
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 3 cut(s) 290, 410, 581
BmgBI CACGTC 1 cut(s) 222
BmiI GGNNCC 3 cut(s) 83, 406, 543
BmrFI CCNGG 3 cut(s) 290, 410, 581
BmsI GCATC 3 cut(s) 585, 615, 787
BpmI CTGGAG 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 549
BsaJI CCNNGG 5 cut(s) 48, 392, 408, 700, 877
Bse1I ACTGG 3 cut(s) 234, 465, 590
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 3 cut(s) 290, 410, 581
BseDI CCNNGG 5 cut(s) 48, 392, 408, 700, 877
BseGI GGATG 6 cut(s) 326, 361, 433, 576, 640, 867
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 2 cut(s) 508, 714
BseNI ACTGG 3 cut(s) 234, 465, 590
BseSI GKGCMC 1 cut(s) 407
BseX3I CGGCCG 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 857
Bsh1236I CGCG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 191, 293, 562
BshNI GGYRCC 2 cut(s) 404, 541
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 31
BslFI GGGAC 2 cut(s) 72, 880
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 2 cut(s) 72, 880
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 3 cut(s) 191, 293, 562
Bsp119I TTCGAA 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 288, 407
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 8, 383, 639
BspACI CCGC 3 cut(s) 333, 666, 691
BspANI GGCC 3 cut(s) 191, 293, 562
BspCNI CTCAG 2 cut(s) 507, 715
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 3 cut(s) 83, 406, 543
BspPI GGATC 2 cut(s) 3, 391
BspT104I TTCGAA 1 cut(s) 212
BspT107I GGYRCC 2 cut(s) 404, 541
BsrDI GCAATG 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 234, 465, 590
BssECI CCNNGG 5 cut(s) 48, 392, 408, 700, 877
BssMI GATC 3 cut(s) 8, 383, 639
BssSI CACGAG 1 cut(s) 241
BssT1I CCWWGG 3 cut(s) 48, 392, 877
Bst2BI CACGAG 1 cut(s) 241
Bst2UI CCWGG 3 cut(s) 290, 410, 581
Bst4CI ACNGT 4 cut(s) 130, 434, 503, 697
Bst6I CTCTTC 1 cut(s) 884
BstAPI GCANNNNNTGC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 212
BstC8I GCNNGC 5 cut(s) 276, 280, 284, 540, 655
BstDEI CTNAG 4 cut(s) 494, 529, 572, 723
BstF5I GGATG 6 cut(s) 326, 361, 433, 576, 640, 867
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 3 cut(s) 11, 386, 642
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 3 cut(s) 8, 383, 639
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 3 cut(s) 31, 341, 854
BstNI CCWGG 3 cut(s) 290, 410, 581
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 3 cut(s) 288, 408, 579
BstSLI GKGCMC 1 cut(s) 407
BstUI CGCG 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 8, 639
BstYI RGATCY 2 cut(s) 8, 639
BstZI CGGCCG 1 cut(s) 189
BsuRI GGCC 3 cut(s) 191, 293, 562
BtgZI GCGATG 1 cut(s) 638
BtrI CACGTC 1 cut(s) 222
BtsCI GGATG 6 cut(s) 326, 361, 433, 576, 640, 867
BtsIMutI CAGTG 4 cut(s) 126, 502, 597, 683
Cac8I GCNNGC 5 cut(s) 276, 280, 284, 540, 655
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 1 cut(s) 44
Csp6I GTAC 3 cut(s) 4, 111, 468
CviAII CATG 5 cut(s) 305, 424, 647, 733, 768
CviQI GTAC 3 cut(s) 4, 111, 468
DdeI CTNAG 4 cut(s) 494, 529, 572, 723
DpnI GATC 3 cut(s) 10, 385, 641
DpnII GATC 3 cut(s) 8, 383, 639
EaeI YGGCCR 1 cut(s) 189
EagI CGGCCG 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 884
EarI CTCTTC 1 cut(s) 884
EclXI CGGCCG 1 cut(s) 189
Eco130I CCWWGG 3 cut(s) 48, 392, 877
Eco147I AGGCCT 1 cut(s) 293
Eco52I CGGCCG 1 cut(s) 189
EcoRI GAATTC 2 cut(s) 197, 214
EcoRII CCWGG 3 cut(s) 288, 408, 579
EcoT14I CCWWGG 3 cut(s) 48, 392, 877
ErhI CCWWGG 3 cut(s) 48, 392, 877
FaeI CATG 5 cut(s) 308, 427, 650, 736, 771
FalI AAGNNNNNCTT 1 cut(s) 881
FaqI GGGAC 2 cut(s) 72, 880
FatI CATG 5 cut(s) 304, 423, 646, 732, 767
FauNDI CATATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 6 cut(s) 333, 368, 440, 563, 647, 874
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 333
GsaI CCCAGC 1 cut(s) 861
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 3 cut(s) 191, 293, 562
HapII CCGG 1 cut(s) 31
HhaI GCGC 1 cut(s) 44
Hin1II CATG 5 cut(s) 308, 427, 650, 736, 771
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 5 cut(s) 19, 456, 461, 746, 894
HpaII CCGG 1 cut(s) 31
HphI GGTGA 2 cut(s) 499, 802
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 139, 383, 704
Hpy188III TCNNGA 2 cut(s) 761, 824
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 2 cut(s) 662, 746
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 4 cut(s) 130, 434, 503, 697
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 4 cut(s) 170, 350, 439, 538
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 341, 854
HpyF3I CTNAG 4 cut(s) 494, 529, 572, 723
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 5 cut(s) 308, 427, 650, 736, 771
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 3 cut(s) 8, 383, 639
LmnI GCTCC 2 cut(s) 291, 324
LweI GCATC 3 cut(s) 585, 615, 787
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 236, 497
MalI GATC 3 cut(s) 10, 385, 641
MboI GATC 3 cut(s) 8, 383, 639
MboII GAAGA 2 cut(s) 823, 901
MflI RGATCY 2 cut(s) 8, 639
MhlI GDGCHC 2 cut(s) 288, 407
MluCI AATT 3 cut(s) 172, 197, 214
MlyI GAGTC 2 cut(s) 470, 903
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 9 cut(s) 110, 237, 304, 394, 435, 573, 698, 710, 820
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 2 cut(s) 128, 410
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 3 cut(s) 290, 410, 581
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 3 cut(s) 290, 410, 581
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 31, 341, 854
NdeI CATATG 1 cut(s) 72
NdeII GATC 3 cut(s) 8, 383, 639
NlaIII CATG 5 cut(s) 308, 427, 650, 736, 771
NlaIV GGNNCC 3 cut(s) 83, 406, 543
NmeAIII GCCGAG 1 cut(s) 276
NmuCI GTSAC 2 cut(s) 236, 497
NspI RCATGY 1 cut(s) 736
NspV TTCGAA 1 cut(s) 212
OliI CACNNNNGTG 2 cut(s) 128, 410
PceI AGGCCT 1 cut(s) 293
PcsI WCGNNNNNNNCGW 2 cut(s) 218, 248
PctI GAATGC 1 cut(s) 773
PfeI GAWTC 3 cut(s) 19, 456, 746
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 2 cut(s) 469, 902
PpsI GAGTC 2 cut(s) 469, 902
Psp6I CCWGG 3 cut(s) 288, 408, 579
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 3 cut(s) 288, 408, 579
PspN4I GGNNCC 3 cut(s) 83, 406, 543
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 2 cut(s) 8, 639
RsaI GTAC 3 cut(s) 5, 112, 469
RsaNI GTAC 3 cut(s) 4, 111, 468
RseI CAYNNNNRTG 2 cut(s) 128, 410
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 3 cut(s) 8, 383, 639
SchI GAGTC 2 cut(s) 470, 903
ScrFI CCNGG 3 cut(s) 290, 410, 581
SduI GDGCHC 2 cut(s) 288, 407
SetI ASST 7 cut(s) 224, 280, 317, 480, 516, 571, 850
SfaNI GCATC 3 cut(s) 585, 615, 787
SfuI TTCGAA 1 cut(s) 212
SmiMI CAYNNNNRTG 2 cut(s) 128, 410
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 3 cut(s) 172, 197, 214
SseBI AGGCCT 1 cut(s) 293
SsiI CCGC 3 cut(s) 333, 666, 691
SspMI CTAG 1 cut(s) 162
StuI AGGCCT 1 cut(s) 293
StyD4I CCNGG 3 cut(s) 288, 408, 579
StyI CCWWGG 3 cut(s) 48, 392, 877
TaaI ACNGT 4 cut(s) 130, 434, 503, 697
TaiI ACGT 1 cut(s) 224
TaqI TCGA 3 cut(s) 212, 459, 554
TasI AATT 3 cut(s) 172, 197, 214
TatI WGTACW 2 cut(s) 3, 467
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 3 cut(s) 19, 456, 746
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 4 cut(s) 133, 502, 597, 683
TseFI GTSAC 2 cut(s) 236, 497
Tsp45I GTSAC 2 cut(s) 236, 497
TspDTI ATGAA 2 cut(s) 210, 412
TspGWI ACGGA 2 cut(s) 74, 509
TspRI CASTG 4 cut(s) 133, 502, 597, 683
XapI RAATTY 3 cut(s) 172, 197, 214
XceI RCATGY 1 cut(s) 736
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.