pycom02g21780

Ubiquinone biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0009366
Physical Location & Seq
Forward (+)
20002998 .. 20003906
909 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g21780.1

Sequence Viewer

Length: 909 bp
ATGTATCGATCCACAGCAAATCGGCTTCTCCGGCTCTTTGGCGCACCCTTGGTTAGCAGTAGCAATACCCATATGATTCACTTCCGTCCTCTTCAATCGCTTGTTGGTCGTTCTCACTTTTCCACCACTGTGAACTCTGAACCATTTGTTGAAAAACCCCCTAGTTTTGCAAGTTCCACATCATCAACGGCCAATGAATTCCCTAATGTTTCGAATTCCACGTCATCAACAGCCGGTCACACAAGGAAGTCGAGAGTAGAATACCAAGATGAGCAAGCTCGCGTGCTCCAGGCATCGCTTCCCCATGTGATAAGATTGGGATGGAGCGAAGCCGCGATGATTGCTGGTGCAAGGGATGTTGGTGTGTCTCCATCTATTGTCGGATCATTTCCAAGGAAAGAGGGCACTCTGGTGGAGTTTTTCATGGATGACTGTTTGCAGATGCTTATTGATAGAATCGAGTCCAGTACAGATGAGCTGAAAAGTTTGATACTCAGTGACCGTATCGCCAAGCTTATCCGTATTCGCTTAGAAATGCAGGCACCCTACATATCGAAATGGCCTCAAGCTCTTAGCATCCAGGCACAACCAGTGAATGTTCCCACAAGTTTTAAGCAGAGGGCGATGCTTGTGGATGAGATTTGGCATGGTGCTGGTGATGACACCGCTGATTTTCAGTGGTATGTGAAGCGGACTGTCCTTGGAGGAATATACTCCACAACTGAGATTTACATGCTTGCCGACAATTCCCCAGATTTTCGTGATACATGGGCATTCTTGGATAATCTGGTGAAAGATGCCTTTGACTTGAAGAAAACCATTCAAGAGGCGACATACTTGGCAGAAGCTGTCGGTGCTGGGATGGGGACTTCTTTCCAAGGATTTGTGAAGAGAGTCTTTCAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COQ9

Protein Analysis

303

Amino Acids

33.64

Weight (kDa)

6.61

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COQ9 PF08511 200 - 269 3.9e-27 COQ9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 541
AccII CGCG 2 cut(s) 282, 335
AciI CCGC 3 cut(s) 333, 666, 691
AclWI GGATC 2 cut(s) 3, 391
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 2 cut(s) 197, 214
AfaI GTAC 1 cut(s) 469
AgsI TTSAA 4 cut(s) 95, 152, 811, 824
AjiI CACGTC 1 cut(s) 222
AjnI CCWGG 2 cut(s) 288, 579
AleI CACNNNNGTG 2 cut(s) 128, 410
AluBI AGCT 5 cut(s) 278, 478, 514, 569, 848
AluI AGCT 5 cut(s) 278, 478, 514, 569, 848
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 2 cut(s) 3, 391
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 2 cut(s) 189, 560
ApoI RAATTY 2 cut(s) 197, 214
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AspLEI GCGC 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 668, 802
AsuII TTCGAA 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 407
BanI GGYRCC 1 cut(s) 541
Bbv12I GWGCWC 1 cut(s) 288
BccI CCATC 3 cut(s) 315, 379, 856
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 2 cut(s) 290, 581
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 2 cut(s) 290, 581
BmgBI CACGTC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 2 cut(s) 290, 581
BmsI GCATC 5 cut(s) 302, 432, 585, 615, 787
BpmI CTGGAG 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 4 cut(s) 48, 392, 700, 877
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 465, 590
BseBI CCWGG 2 cut(s) 290, 581
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 4 cut(s) 48, 392, 700, 877
BseGI GGATG 6 cut(s) 326, 361, 433, 576, 640, 867
BseMII CTCAG 2 cut(s) 508, 714
BseNI ACTGG 2 cut(s) 465, 590
BseSI GKGCMC 1 cut(s) 407
BseYI CCCAGC 1 cut(s) 857
Bsh1236I CGCG 2 cut(s) 282, 335
BshFI GGCC 2 cut(s) 191, 562
BshNI GGYRCC 1 cut(s) 541
BshVI ATCGAT 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 2 cut(s) 31, 234
BslFI GGGAC 1 cut(s) 880
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 880
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 2 cut(s) 191, 562
Bsp119I TTCGAA 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 288, 407
Bsp143I GATC 2 cut(s) 8, 383
BspACI CCGC 3 cut(s) 333, 666, 691
BspANI GGCC 2 cut(s) 191, 562
BspCNI CTCAG 2 cut(s) 507, 715
BspDI ATCGAT 1 cut(s) 7
BspFNI CGCG 2 cut(s) 282, 335
BspLI GGNNCC 1 cut(s) 543
BspPI GGATC 2 cut(s) 3, 391
BspT104I TTCGAA 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 541
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 2 cut(s) 465, 590
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 4 cut(s) 48, 392, 700, 877
BssMI GATC 2 cut(s) 8, 383
BssT1I CCWWGG 4 cut(s) 48, 392, 700, 877
Bst2UI CCWGG 2 cut(s) 290, 581
Bst4CI ACNGT 4 cut(s) 130, 434, 503, 697
Bst6I CTCTTC 2 cut(s) 96, 884
BstBI TTCGAA 1 cut(s) 212
BstC8I GCNNGC 5 cut(s) 276, 280, 284, 540, 738
BstDEI CTNAG 4 cut(s) 494, 529, 572, 723
BstF5I GGATG 6 cut(s) 326, 361, 433, 576, 640, 867
BstFNI CGCG 2 cut(s) 282, 335
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 2 cut(s) 11, 386
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 2 cut(s) 8, 383
BstMWI GCNNNNNNNGC 3 cut(s) 31, 341, 854
BstNI CCWGG 2 cut(s) 290, 581
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 2 cut(s) 288, 579
BstSLI GKGCMC 1 cut(s) 407
BstUI CGCG 2 cut(s) 282, 335
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 2 cut(s) 191, 562
BsuTUI ATCGAT 1 cut(s) 7
BtgZI GCGATG 3 cut(s) 279, 350, 638
BtrI CACGTC 1 cut(s) 222
BtsCI GGATG 6 cut(s) 326, 361, 433, 576, 640, 867
BtsIMutI CAGTG 4 cut(s) 126, 502, 597, 683
Cac8I GCNNGC 5 cut(s) 276, 280, 284, 540, 738
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 233
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 1 cut(s) 468
CviAII CATG 5 cut(s) 305, 424, 647, 733, 768
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 4 cut(s) 494, 529, 572, 723
DpnI GATC 2 cut(s) 10, 385
DpnII GATC 2 cut(s) 8, 383
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 96, 884
EarI CTCTTC 2 cut(s) 96, 884
Eco130I CCWWGG 4 cut(s) 48, 392, 700, 877
EcoRI GAATTC 2 cut(s) 197, 214
EcoRII CCWGG 2 cut(s) 288, 579
EcoT14I CCWWGG 4 cut(s) 48, 392, 700, 877
ErhI CCWWGG 4 cut(s) 48, 392, 700, 877
FaeI CATG 5 cut(s) 308, 427, 650, 736, 771
FalI AAGNNNNNCTT 1 cut(s) 881
FaqI GGGAC 1 cut(s) 880
FatI CATG 5 cut(s) 304, 423, 646, 732, 767
FauNDI CATATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 6 cut(s) 333, 368, 440, 563, 647, 874
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 333
GsaI CCCAGC 1 cut(s) 861
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 2 cut(s) 191, 562
HapII CCGG 2 cut(s) 31, 234
HhaI GCGC 1 cut(s) 44
Hin1II CATG 5 cut(s) 308, 427, 650, 736, 771
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 4 cut(s) 76, 456, 461, 894
HpaII CCGG 2 cut(s) 31, 234
HphI GGTGA 2 cut(s) 668, 802
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 139, 383
Hpy188III TCNNGA 3 cut(s) 252, 761, 824
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4III ACNGT 4 cut(s) 130, 434, 503, 697
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 4 cut(s) 170, 350, 439, 538
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 341, 854
HpyF3I CTNAG 4 cut(s) 494, 529, 572, 723
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 5 cut(s) 308, 427, 650, 736, 771
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 8, 383
LmnI GCTCC 2 cut(s) 291, 324
LweI GCATC 5 cut(s) 302, 432, 585, 615, 787
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 236, 497
MalI GATC 2 cut(s) 10, 385
MboI GATC 2 cut(s) 8, 383
MboII GAAGA 3 cut(s) 83, 823, 901
MhlI GDGCHC 2 cut(s) 288, 407
MluCI AATT 3 cut(s) 197, 214, 745
MlyI GAGTC 2 cut(s) 470, 903
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 6 cut(s) 99, 394, 573, 612, 698, 820
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 2 cut(s) 128, 410
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 2 cut(s) 31, 234
MspR9I CCNGG 2 cut(s) 290, 581
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 2 cut(s) 290, 581
MvnI CGCG 2 cut(s) 282, 335
MwoI GCNNNNNNNGC 3 cut(s) 31, 341, 854
NdeI CATATG 1 cut(s) 72
NdeII GATC 2 cut(s) 8, 383
NlaIII CATG 5 cut(s) 308, 427, 650, 736, 771
NlaIV GGNNCC 1 cut(s) 543
NmuCI GTSAC 2 cut(s) 236, 497
NspI RCATGY 1 cut(s) 736
NspV TTCGAA 1 cut(s) 212
OliI CACNNNNGTG 2 cut(s) 128, 410
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PctI GAATGC 1 cut(s) 773
PfeI GAWTC 2 cut(s) 76, 456
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 2 cut(s) 469, 902
PpsI GAGTC 2 cut(s) 469, 902
Psp6I CCWGG 2 cut(s) 288, 579
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 2 cut(s) 288, 579
PspN4I GGNNCC 1 cut(s) 543
PstNI CAGNNNCTG 1 cut(s) 848
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 2 cut(s) 128, 410
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 2 cut(s) 8, 383
SchI GAGTC 2 cut(s) 470, 903
ScrFI CCNGG 2 cut(s) 290, 581
SduI GDGCHC 2 cut(s) 288, 407
SetI ASST 6 cut(s) 224, 280, 480, 516, 571, 850
SfaNI GCATC 5 cut(s) 302, 432, 585, 615, 787
SfuI TTCGAA 1 cut(s) 212
SmiMI CAYNNNNRTG 2 cut(s) 128, 410
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 3 cut(s) 197, 214, 745
SsiI CCGC 3 cut(s) 333, 666, 691
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 288, 579
StyI CCWWGG 4 cut(s) 48, 392, 700, 877
TaaI ACNGT 4 cut(s) 130, 434, 503, 697
TaiI ACGT 1 cut(s) 224
TaqI TCGA 5 cut(s) 7, 212, 251, 459, 554
TasI AATT 3 cut(s) 197, 214, 745
TatI WGTACW 1 cut(s) 467
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 2 cut(s) 76, 456
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 4 cut(s) 133, 502, 597, 683
TseFI GTSAC 2 cut(s) 236, 497
Tsp45I GTSAC 2 cut(s) 236, 497
TspDTI ATGAA 2 cut(s) 210, 412
TspGWI ACGGA 2 cut(s) 74, 509
TspRI CASTG 4 cut(s) 133, 502, 597, 683
XapI RAATTY 2 cut(s) 197, 214
XceI RCATGY 1 cut(s) 736
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.