Prupe.2G075400_v2.0.a1

Ubiquinone biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0009366
Physical Location & Seq
Reverse (-)
11499836 .. 11502213
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G075400.4

Sequence Viewer

Length: 909 bp
ATGTATAGCTCAGCAGCGAAGCGGCTTCTCCATCTCTTTGGTACATCCTTGGGTAGCAGTACCAACCACCGTACTATTCGTTACCGCCCTCTTCAATCCCTCATTAGTCGTTCTCACTTTTCCACAACTGTGAACTCTGAATCTTTCGTCAATCAAAGCCCTAACTTTCAAAACTCCACGTCGTCAACGGCCGATCAAATCCCTAATTTTTCAAATACCACGTCGTCAACGGCTGATCACACTAGGAGACCGAGAGCGGAATACCAAGATGAGCAAGCTCGTGTGCTCCAAGCCTCACTCCCCCATGTTATAAGGTTGGGATGGAGCGAAGCGGCTATGATTGCTGGTGCAAGGGATGTTGGTCTGTCTCCATCGATTGTCGGATCATTTCCAAGGAAGGAGGGTATGCTTGTTGAGTTTTTCATGGATGACTGTTTGCAAAGGCTTAGTGATATGATCGACTCTAGTACAGAGGAGTTAAAAAGTTTGATACCAAGTGAGAGGATCACAAAGCTTGTGAAGATTCGCTTAGAAATGCAGGCACCCTACATATCGAAGTGGCCACAAGCTCTTAGCATCCAGGCACAACCAGTGAATGTACCCACAAGTTTTAAGCAGAGGGCAATGCTTATGGATGAGATCTGGCATGGTGCTGGCGACGACACAGCTGATTTTCAGTGGTATGTGAAGCGGACTGTCCTTGGAGGTATATACTCCACAACCGAGATTTACATGCTTACTGATAATTCCCCAGATTTTTGTGATACATGGGCATTCTTGGATGATCGAGTGAAAGATGCTTTTGACTTGAAGAAAACCGTCCAAGAGGCAACATACTTGGCAGAAGCTGTTGGTGCTGGGATGGGGACTTCTTTGCAAGGATTTGTGAAGAGAGTCTTTCAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COQ9

Protein Analysis

303

Amino Acids

33.82

Weight (kDa)

6.32

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 541
AccBSI CCGCTC 1 cut(s) 257
AciI CCGC 5 cut(s) 22, 85, 257, 332, 691
AclWI GGATC 2 cut(s) 391, 512
AcoI YGGCCR 2 cut(s) 189, 560
AfaI GTAC 5 cut(s) 43, 61, 73, 469, 600
AgsI TTSAA 4 cut(s) 95, 170, 213, 811
AjiI CACGTC 2 cut(s) 180, 222
AjnI CCWGG 1 cut(s) 579
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 6 cut(s) 9, 278, 514, 569, 668, 848
AluI AGCT 6 cut(s) 9, 278, 514, 569, 668, 848
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 241, 372
AlwI GGATC 2 cut(s) 391, 512
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 2 cut(s) 189, 560
ApeKI GCWGC 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
BalI TGGCCA 1 cut(s) 562
BanI GGYRCC 1 cut(s) 541
BauI CACGAG 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 26
BccI CCATC 4 cut(s) 39, 315, 379, 856
BceAI ACGGC 2 cut(s) 204, 246
BciT130I CCWGG 1 cut(s) 581
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 241, 372
BfaI CTAG 2 cut(s) 243, 465
BglII AGATCT 1 cut(s) 639
BisI GCNGC 3 cut(s) 15, 23, 333
BlpI GCTNAGC 1 cut(s) 10
BlsI GCNGC 3 cut(s) 16, 24, 334
Bme1390I CCNGG 1 cut(s) 581
BmgBI CACGTC 2 cut(s) 180, 222
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 1 cut(s) 581
BmsI GCATC 2 cut(s) 585, 787
Bpu1102I GCTNAGC 1 cut(s) 10
Bsa29I ATCGAT 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 3 cut(s) 48, 392, 700
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 630
BseBI CCWGG 1 cut(s) 581
BseCI ATCGAT 1 cut(s) 374
BseDI CCNNGG 3 cut(s) 48, 392, 700
BseGI GGATG 8 cut(s) 44, 326, 361, 433, 576, 640, 787, 867
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 590
BseRI GAGGAG 1 cut(s) 488
BseX3I CGGCCG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 26
BseYI CCCAGC 1 cut(s) 857
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 191, 562
BshNI GGYRCC 1 cut(s) 541
BshVI ATCGAT 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 880
BsmAI GTCTC 2 cut(s) 241, 372
BsmFI GGGAC 1 cut(s) 880
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 2 cut(s) 191, 562
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 7 cut(s) 193, 235, 383, 456, 504, 639, 784
Bsp1720I GCTNAGC 1 cut(s) 10
BspACI CCGC 5 cut(s) 22, 85, 257, 332, 691
BspANI GGCC 2 cut(s) 191, 562
BspCNI CTCAG 1 cut(s) 23
BspDI ATCGAT 1 cut(s) 374
BspLI GGNNCC 1 cut(s) 543
BspPI GGATC 2 cut(s) 391, 512
BspT107I GGYRCC 1 cut(s) 541
BspTNI GGTCTC 1 cut(s) 241
BsrBI CCGCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 630
BsrI ACTGG 1 cut(s) 590
BssECI CCNNGG 3 cut(s) 48, 392, 700
BssMI GATC 7 cut(s) 193, 235, 383, 456, 504, 639, 784
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 3 cut(s) 48, 392, 700
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 5 cut(s) 71, 130, 434, 697, 820
Bst6I CTCTTC 2 cut(s) 96, 884
BstC8I GCNNGC 3 cut(s) 276, 540, 655
BstDEI CTNAG 4 cut(s) 10, 446, 529, 572
BstF5I GGATG 8 cut(s) 44, 326, 361, 433, 576, 640, 787, 867
BstKTI GATC 7 cut(s) 196, 238, 386, 459, 507, 642, 787
BstMAI GTCTC 2 cut(s) 241, 372
BstMBI GATC 7 cut(s) 193, 235, 383, 456, 504, 639, 784
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 341, 854
BstNI CCWGG 1 cut(s) 581
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 1 cut(s) 579
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 639
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 1 cut(s) 639
BstZI CGGCCG 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 374
BsuRI GGCC 2 cut(s) 191, 562
BsuTUI ATCGAT 1 cut(s) 374
BtrI CACGTC 2 cut(s) 180, 222
BtsCI GGATG 8 cut(s) 44, 326, 361, 433, 576, 640, 787, 867
BtsIMutI CAGTG 2 cut(s) 597, 683
Cac8I GCNNGC 3 cut(s) 276, 540, 655
CaiI CAGNNNCTG 1 cut(s) 848
ClaI ATCGAT 1 cut(s) 374
Csp6I GTAC 5 cut(s) 42, 60, 72, 468, 599
CviAII CATG 5 cut(s) 305, 424, 647, 733, 768
CviQI GTAC 5 cut(s) 42, 60, 72, 468, 599
DdeI CTNAG 4 cut(s) 10, 446, 529, 572
DpnI GATC 7 cut(s) 195, 237, 385, 458, 506, 641, 786
DpnII GATC 7 cut(s) 193, 235, 383, 456, 504, 639, 784
EaeI YGGCCR 2 cut(s) 189, 560
EagI CGGCCG 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 96, 884
EarI CTCTTC 2 cut(s) 96, 884
EclXI CGGCCG 1 cut(s) 189
Eco130I CCWWGG 3 cut(s) 48, 392, 700
Eco31I GGTCTC 1 cut(s) 241
Eco52I CGGCCG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 579
EcoT14I CCWWGG 3 cut(s) 48, 392, 700
ErhI CCWWGG 3 cut(s) 48, 392, 700
FaeI CATG 5 cut(s) 308, 427, 650, 736, 771
FalI AAGNNNNNCTT 3 cut(s) 512, 544, 881
FaqI GGGAC 1 cut(s) 880
FatI CATG 5 cut(s) 304, 423, 646, 732, 767
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 15, 23, 333
FokI GGATG 8 cut(s) 31, 333, 368, 440, 563, 647, 794, 874
Fsp4HI GCNGC 3 cut(s) 15, 23, 333
FspBI CTAG 2 cut(s) 243, 465
GluI GCNGC 3 cut(s) 15, 23, 333
GsaI CCCAGC 1 cut(s) 861
HaeIII GGCC 2 cut(s) 191, 562
Hin1II CATG 5 cut(s) 308, 427, 650, 736, 771
HincII GTYRAC 2 cut(s) 186, 228
HindII GTYRAC 2 cut(s) 186, 228
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 4 cut(s) 140, 461, 523, 894
Hpy166II GTNNAC 3 cut(s) 133, 186, 228
Hpy188I TCNGA 2 cut(s) 139, 383
Hpy8I GTNNAC 3 cut(s) 133, 186, 228
Hpy99I CGWCG 3 cut(s) 184, 226, 662
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 5 cut(s) 71, 130, 434, 697, 820
HpyCH4IV ACGT 2 cut(s) 179, 221
HpyCH4V TGCA 4 cut(s) 350, 439, 538, 877
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 854
HpyF3I CTNAG 4 cut(s) 10, 446, 529, 572
HpySE526I ACGT 2 cut(s) 179, 221
Hsp92II CATG 5 cut(s) 308, 427, 650, 736, 771
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 7 cut(s) 193, 235, 383, 456, 504, 639, 784
LmnI GCTCC 2 cut(s) 291, 324
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 2 cut(s) 585, 787
MaeI CTAG 2 cut(s) 243, 465
MaeII ACGT 2 cut(s) 179, 221
MaeIII GTNAC 1 cut(s) 80
MalI GATC 7 cut(s) 195, 237, 385, 458, 506, 641, 786
MbiI CCGCTC 1 cut(s) 257
MboI GATC 7 cut(s) 193, 235, 383, 456, 504, 639, 784
MboII GAAGA 4 cut(s) 83, 532, 823, 901
MflI RGATCY 1 cut(s) 639
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 562
MluCI AATT 2 cut(s) 205, 745
MluNI TGGCCA 1 cut(s) 562
MlyI GAGTC 2 cut(s) 455, 903
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 9 cut(s) 99, 110, 304, 394, 466, 495, 612, 698, 820
Mox20I TGGCCA 1 cut(s) 562
MscI TGGCCA 1 cut(s) 562
MseI TTAA 2 cut(s) 479, 612
MslI CAYNNNNRTG 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 562
MspA1I CMGCKG 1 cut(s) 668
MspR9I CCNGG 1 cut(s) 581
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 1 cut(s) 581
MwoI GCNNNNNNNGC 2 cut(s) 341, 854
NdeII GATC 7 cut(s) 193, 235, 383, 456, 504, 639, 784
NlaIII CATG 5 cut(s) 308, 427, 650, 736, 771
NlaIV GGNNCC 1 cut(s) 543
NspI RCATGY 1 cut(s) 736
OliI CACNNNNGTG 1 cut(s) 128
PctI GAATGC 1 cut(s) 773
PfeI GAWTC 2 cut(s) 140, 523
PkrI GCNGC 3 cut(s) 16, 24, 334
PleI GAGTC 2 cut(s) 455, 902
PpsI GAGTC 2 cut(s) 455, 902
PsiI TTATAA 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 579
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 1 cut(s) 543
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 1 cut(s) 639
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 5 cut(s) 43, 61, 73, 469, 600
RsaNI GTAC 5 cut(s) 42, 60, 72, 468, 599
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 2 cut(s) 479, 612
SatI GCNGC 3 cut(s) 15, 23, 333
Sau3AI GATC 7 cut(s) 193, 235, 383, 456, 504, 639, 784
SchI GAGTC 2 cut(s) 455, 903
ScrFI CCNGG 1 cut(s) 581
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 2 cut(s) 585, 787
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 2 cut(s) 205, 745
SsiI CCGC 5 cut(s) 22, 85, 257, 332, 691
SspMI CTAG 2 cut(s) 243, 465
StyD4I CCNGG 1 cut(s) 579
StyI CCWWGG 3 cut(s) 48, 392, 700
TaaI ACNGT 5 cut(s) 71, 130, 434, 697, 820
TaiI ACGT 2 cut(s) 182, 224
TaqI TCGA 4 cut(s) 374, 459, 554, 787
TaqII GACCGA 1 cut(s) 265
TasI AATT 2 cut(s) 205, 745
TatI WGTACW 1 cut(s) 467
TauI GCSGC 2 cut(s) 25, 335
TfiI GAWTC 2 cut(s) 140, 523
Tru1I TTAA 2 cut(s) 479, 612
Tru9I TTAA 2 cut(s) 479, 612
TscAI CASTG 2 cut(s) 597, 683
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 412
TspRI CASTG 2 cut(s) 597, 683
XceI RCATGY 1 cut(s) 736
XspI CTAG 2 cut(s) 243, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.