FvH4_7g06590

acyl-CoA-binding domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
6579777 .. 6588036
8260 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06590.t8

Sequence Viewer

Length: 1374 bp
ATGGGAACAGAAGAGATAAAGAAAATTGTGGATGCCAGCAATTGGCAATCTCATTTGGCATATGATCAGTGGGTAGCACTTCCTGTATCTGGTTCACGACCACCAGCTCGCTACAAGCATGCTGCTGTAGTAGTTCATGAGAACTTGTATATTGTTGGCGGGAGTCGTAATGGAAGGCATCTATCCGATGTTCAGGTCTTCGACTTTAGAAATTTGTTATGGTCAACTATAAAACTGAATGCAAGTTCCAATAATTTTGAAGATAGTGGTGTACAAGAAGTTGTTCCACCCACCTCTTCTCACAATCTGGTGAAGTGGGGAAACAAACTCCTTGTCATTGGTGGGAATTCGAAGAAATTGTCTGATAAAATAATAGTGTGGTTCATCGATTTGGAAACACACCTCTCTGGCGTCATGGAGACTTCAGGAAAAGTTCCGGCAGCTCGTGCGGGGCAGTCAACTACACTGGTTGGCTCTAGATTGATAATGTTCGGTGGAGAAGACAGGAGCAGAAAATTGTTGAATGATGTCAATGTTCTTGATTTAGAGACTATGACTTGGGATGTGATGGACACATCGCAGACCCCTCCAGCTCCAAGATATGATCACACAGCAGCAGTACATGCAGAACGTTACCTTTTAATTTTTGGTGGTTGTTCACATTCTAGTTTCTTCAGTGATCTTCATGTTCTGGACTTACAAGCTATGGAGTGGTCCCAGCCACAAGTTCAGGGTGATCTTGTAGCTCCTAGGGCAGGTCATGCGGGTATAACTATTGGAGAAAACTGGTATATAGTTGGCGGTGGAGATAACAAAAATGGTTGCCCAGAAACACTGGCCTTAAATATGTCTAAGCTAGTGTGGTCAGTGTCAACAACTGTAAAGCAAAGGGATCCACTTGCTAGTGAGGGTCTAACTGTCTGTTCTGTGAATCTTGATGGAAAGAAGCATTTGGTTGCCTTTGGTGGCTATAATGGGAACTATAGCAATGAGGTTTTTGTTATGAGACCTAAACCAAATGACTCTTCACAACGGAAGATATTCCAGTCACCAGCAGCTGCTGCAGCAGCAGCTTCTGTTACTGCTGCCTATGCCTTGACTAAATCAGAAAAGTTGAATTTCACAACAGTACAGTCAAACTCCCATGGAGCTGAAAATCATCGCTATGAACAAGATTTCACAATTGACATAGAAGCCCTGAGAGAAGAGAAAGGTGTGCTGGAATTGTCTCTTTCCGAAGTCAGGAAAGAAAATGCTAGGGTCACCCAGGAGATAGATGAAGTCAACAATACTCACAGTGAGTTGTCCAAGGAACTGCAGTCCGTCCAAGGGCAACTTGTAGCTGAGAGATCAAGATGTTTTAAATTGGAGTGA

Protein Analysis

458

Amino Acids

50.32

Weight (kDa)

6.03

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ATRN-LZTR1 PF24981 15 - 179 5.5e-08 Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7 PF24681 19 - 65 1.9e-07 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 100 - 247 1.1e-14 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 103 - 247 1e-26 FBX42, beta-propeller domain
Kelch_HCF PF13854 107 - 293 4e-19 Host cell factor, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 125 - 348 2e-53 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 136 - 280 3.8e-19 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 225 - 381 5.2e-20 FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1 PF24981 250 - 371 4e-10 Attractin/LZTR1 beta-propeller
ACBP4_C PF24922 420 - 520 2.2e-37 Acyl-CoA-binding domain-containing protein 4-6, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 746
AccB7I CCANNNNNTGG 1 cut(s) 42
AciI CCGC 4 cut(s) 159, 449, 764, 801
AclI AACGTT 1 cut(s) 631
AclWI GGATC 2 cut(s) 887, 900
AcsI RAATTY 3 cut(s) 211, 346, 1117
AcuI CTGAAG 2 cut(s) 408, 658
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 3 cut(s) 273, 621, 1131
AfiI CCNNNNNNNGG 5 cut(s) 42, 89, 755, 1242, 1329
AgsI TTSAA 3 cut(s) 260, 523, 1117
AjnI CCWGG 1 cut(s) 1266
AjuI GAANNNNNNNTTGG 2 cut(s) 1009, 1041
Alw26I GTCTC 4 cut(s) 413, 542, 1000, 1233
AlwI GGATC 2 cut(s) 887, 900
AlwNI CAGNNNCTG 3 cut(s) 1058, 1061, 1076
AoxI GGCC 1 cut(s) 837
ApoI RAATTY 3 cut(s) 211, 346, 1117
ArsI GACNNNNNNTTYG 4 cut(s) 318, 344, 350, 376
Asp700I GAANNNNTTC 2 cut(s) 282, 1040
AspA2I CCTAGG 1 cut(s) 749
AspS9I GGNCC 1 cut(s) 714
AsuHPI GGTGA 4 cut(s) 322, 746, 1041, 1255
AsuII TTCGAA 1 cut(s) 350
AvaII GGWCC 1 cut(s) 714
AvrII CCTAGG 1 cut(s) 749
BamHI GGATCC 1 cut(s) 892
BauI CACGAG 1 cut(s) 444
BbsI GAAGAC 2 cut(s) 190, 507
BccI CCATC 2 cut(s) 562, 932
BciT130I CCWGG 1 cut(s) 1268
BclI TGATCA 2 cut(s) 64, 604
BcoDI GTCTC 4 cut(s) 413, 542, 1000, 1233
BfaI CTAG 6 cut(s) 477, 666, 750, 857, 903, 1257
BfmI CTRYAG 4 cut(s) 126, 982, 1062, 1316
BfuAI ACCTGC 1 cut(s) 746
BlnI CCTAGG 1 cut(s) 749
Bme1390I CCNGG 1 cut(s) 1268
Bme18I GGWCC 1 cut(s) 714
BmgT120I GGNCC 1 cut(s) 714
BmiI GGNNCC 2 cut(s) 716, 894
BmrFI CCNGG 1 cut(s) 1268
BmsI GCATC 2 cut(s) 22, 187
BpiI GAAGAC 2 cut(s) 190, 507
BpmI CTGGAG 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 350
Bsa29I ATCGAT 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 1000
BsaJI CCNNGG 5 cut(s) 749, 1144, 1266, 1308, 1327
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 89, 755, 1242, 1329
Bse1I ACTGG 4 cut(s) 471, 791, 840, 1045
Bse3DI GCAATG 1 cut(s) 994
BseBI CCWGG 1 cut(s) 1268
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 5 cut(s) 749, 1144, 1266, 1308, 1327
BseGI GGATG 2 cut(s) 37, 568
BseLI CCNNNNNNNGG 5 cut(s) 42, 89, 755, 1242, 1329
BseMI GCAATG 1 cut(s) 994
BseMII CTCAG 2 cut(s) 1190, 1335
BseNI ACTGG 4 cut(s) 471, 791, 840, 1045
BseYI CCCAGC 1 cut(s) 717
BshFI GGCC 1 cut(s) 839
BshVI ATCGAT 1 cut(s) 387
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 700
BslI CCNNNNNNNGG 5 cut(s) 42, 89, 755, 1242, 1329
BsmAI GTCTC 4 cut(s) 413, 542, 1000, 1233
BsmFI GGGAC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 1 cut(s) 839
Bso31I GGTCTC 1 cut(s) 1000
Bsp119I TTCGAA 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 6 cut(s) 64, 604, 679, 736, 892, 1349
Bsp19I CCATGG 1 cut(s) 1144
BspACI CCGC 4 cut(s) 159, 449, 764, 801
BspANI GGCC 1 cut(s) 839
BspCNI CTCAG 2 cut(s) 1191, 1336
BspDI ATCGAT 1 cut(s) 387
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 716, 894
BspMAI CTGCAG 2 cut(s) 1066, 1320
BspMI ACCTGC 1 cut(s) 746
BspPI GGATC 2 cut(s) 887, 900
BspT104I TTCGAA 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 1000
BsrDI GCAATG 1 cut(s) 994
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 4 cut(s) 471, 791, 840, 1045
BssECI CCNNGG 5 cut(s) 749, 1144, 1266, 1308, 1327
BssMI GATC 6 cut(s) 64, 604, 679, 736, 892, 1349
BssNI GRCGYC 1 cut(s) 411
BssSI CACGAG 1 cut(s) 444
BssT1I CCWWGG 4 cut(s) 749, 1144, 1308, 1327
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 1268
Bst4CI ACNGT 5 cut(s) 880, 919, 1129, 1134, 1298
Bst6I CTCTTC 4 cut(s) 6, 301, 1030, 1200
BstACI GRCGYC 1 cut(s) 411
BstAPI GCANNNNNTGC 4 cut(s) 446, 623, 761, 1061
BstAUI TGTACA 1 cut(s) 271
BstBI TTCGAA 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 37, 109, 120
BstDEI CTNAG 3 cut(s) 852, 1199, 1344
BstDSI CCRYGG 1 cut(s) 1144
BstEII GGTNACC 1 cut(s) 1261
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 2 cut(s) 37, 568
BstKTI GATC 6 cut(s) 67, 607, 682, 739, 895, 1352
BstMAI GTCTC 4 cut(s) 413, 542, 1000, 1233
BstMBI GATC 6 cut(s) 64, 604, 679, 736, 892, 1349
BstMWI GCNNNNNNNGC 9 cut(s) 446, 623, 752, 761, 1061, 1064, 1067, 1070, 1091
BstNI CCWGG 1 cut(s) 1268
BstNSI RCATGY 2 cut(s) 122, 626
BstPI GGTNACC 1 cut(s) 1261
BstSCI CCNGG 1 cut(s) 1266
BstSFI CTRYAG 4 cut(s) 126, 982, 1062, 1316
BstV2I GAAGAC 2 cut(s) 190, 507
BstX2I RGATCY 1 cut(s) 892
BstYI RGATCY 1 cut(s) 892
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 1 cut(s) 839
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 1144
BtgZI GCGATG 2 cut(s) 561, 1145
BtsCI GGATG 2 cut(s) 37, 568
BtsIMutI CAGTG 6 cut(s) 74, 464, 682, 833, 873, 1303
BveI ACCTGC 1 cut(s) 746
Cac8I GCNNGC 3 cut(s) 37, 109, 120
CaiI CAGNNNCTG 3 cut(s) 1058, 1061, 1076
CciI TCATGA 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 714
ClaI ATCGAT 1 cut(s) 387
CseI GACGC 1 cut(s) 400
Csp6I GTAC 3 cut(s) 272, 620, 1130
CviAII CATG 7 cut(s) 119, 137, 415, 623, 686, 761, 1145
CviQI GTAC 3 cut(s) 272, 620, 1130
DdeI CTNAG 3 cut(s) 852, 1199, 1344
DpnI GATC 6 cut(s) 66, 606, 681, 738, 894, 1351
DpnII GATC 6 cut(s) 64, 604, 679, 736, 892, 1349
DraI TTTAAA 1 cut(s) 1363
Eam1104I CTCTTC 4 cut(s) 6, 301, 1030, 1200
EarI CTCTTC 4 cut(s) 6, 301, 1030, 1200
Eco130I CCWWGG 4 cut(s) 749, 1144, 1308, 1327
Eco31I GGTCTC 1 cut(s) 1000
Eco47I GGWCC 1 cut(s) 714
Eco57I CTGAAG 2 cut(s) 408, 658
Eco91I GGTNACC 1 cut(s) 1261
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoO65I GGTNACC 1 cut(s) 1261
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 1266
EcoT14I CCWWGG 4 cut(s) 749, 1144, 1308, 1327
ErhI CCWWGG 4 cut(s) 749, 1144, 1308, 1327
FaeI CATG 7 cut(s) 122, 140, 418, 626, 689, 764, 1148
FalI AAGNNNNNCTT 2 cut(s) 1320, 1352
FaqI GGGAC 1 cut(s) 700
FatI CATG 7 cut(s) 118, 136, 414, 622, 685, 760, 1144
FauI CCCGC 3 cut(s) 152, 442, 757
FauNDI CATATG 1 cut(s) 61
FbaI TGATCA 2 cut(s) 64, 604
FokI GGATG 2 cut(s) 44, 575
FspBI CTAG 6 cut(s) 477, 666, 750, 857, 903, 1257
GsaI CCCAGC 1 cut(s) 721
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 839
HapII CCGG 1 cut(s) 437
HgaI GACGC 1 cut(s) 400
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 7 cut(s) 122, 140, 418, 626, 689, 764, 1148
HincII GTYRAC 4 cut(s) 225, 459, 873, 1285
HindII GTYRAC 4 cut(s) 225, 459, 873, 1285
HinfI GANTC 3 cut(s) 163, 931, 1022
HpaII CCGG 1 cut(s) 437
HphI GGTGA 4 cut(s) 322, 746, 1041, 1255
Hpy166II GTNNAC 7 cut(s) 95, 225, 272, 459, 659, 873, 1285
Hpy188I TCNGA 4 cut(s) 187, 364, 1108, 1237
Hpy188III TCNNGA 9 cut(s) 96, 137, 426, 477, 539, 692, 935, 1243, 1353
Hpy8I GTNNAC 7 cut(s) 95, 225, 272, 459, 659, 873, 1285
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 5 cut(s) 880, 919, 1129, 1134, 1298
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 4 cut(s) 242, 626, 1064, 1318
HpyF10VI GCNNNNNNNGC 9 cut(s) 446, 623, 752, 761, 1061, 1064, 1067, 1070, 1091
HpyF3I CTNAG 3 cut(s) 852, 1199, 1344
HpySE526I ACGT 1 cut(s) 631
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 7 cut(s) 122, 140, 418, 626, 689, 764, 1148
Ksp22I TGATCA 2 cut(s) 64, 604
Kzo9I GATC 6 cut(s) 64, 604, 679, 736, 892, 1349
LmnI GCTCC 4 cut(s) 507, 598, 751, 1148
LweI GCATC 2 cut(s) 22, 187
MaeI CTAG 6 cut(s) 477, 666, 750, 857, 903, 1257
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 4 cut(s) 632, 1047, 1078, 1261
MalI GATC 6 cut(s) 66, 606, 681, 738, 894, 1351
MboI GATC 6 cut(s) 64, 604, 679, 736, 892, 1349
MfeI CAATTG 2 cut(s) 40, 1182
MflI RGATCY 1 cut(s) 892
MlyI GAGTC 2 cut(s) 172, 1016
MnlI CCTC 5 cut(s) 304, 413, 597, 901, 985
MroXI GAANNNNTTC 2 cut(s) 282, 1040
MseI TTAA 3 cut(s) 641, 842, 1362
MslI CAYNNNNRTG 1 cut(s) 1164
MspA1I CMGCKG 1 cut(s) 1058
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 1268
MunI CAATTG 2 cut(s) 40, 1182
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 1 cut(s) 1268
MwoI GCNNNNNNNGC 9 cut(s) 446, 623, 752, 761, 1061, 1064, 1067, 1070, 1091
NcoI CCATGG 1 cut(s) 1144
NdeI CATATG 1 cut(s) 61
NdeII GATC 6 cut(s) 64, 604, 679, 736, 892, 1349
NlaIII CATG 7 cut(s) 122, 140, 418, 626, 689, 764, 1148
NlaIV GGNNCC 2 cut(s) 716, 894
NmuCI GTSAC 2 cut(s) 1047, 1261
NspI RCATGY 2 cut(s) 122, 626
NspV TTCGAA 1 cut(s) 350
PaeI GCATGC 1 cut(s) 122
PagI TCATGA 1 cut(s) 136
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 2 cut(s) 282, 1040
PfeI GAWTC 1 cut(s) 931
PflMI CCANNNNNTGG 1 cut(s) 42
PleI GAGTC 2 cut(s) 171, 1016
PpsI GAGTC 2 cut(s) 171, 1016
Psp1406I AACGTT 1 cut(s) 631
Psp6I CCWGG 1 cut(s) 1266
PspEI GGTNACC 1 cut(s) 1261
PspFI CCCAGC 1 cut(s) 717
PspGI CCWGG 1 cut(s) 1266
PspN4I GGNNCC 2 cut(s) 716, 894
PspPI GGNCC 1 cut(s) 714
PstI CTGCAG 2 cut(s) 1066, 1320
PstNI CAGNNNCTG 3 cut(s) 1058, 1061, 1076
PsuI RGATCY 1 cut(s) 892
PvuII CAGCTG 1 cut(s) 1058
RsaI GTAC 3 cut(s) 273, 621, 1131
RsaNI GTAC 3 cut(s) 272, 620, 1130
RseI CAYNNNNRTG 1 cut(s) 1164
SaqAI TTAA 3 cut(s) 641, 842, 1362
Sau3AI GATC 6 cut(s) 64, 604, 679, 736, 892, 1349
Sau96I GGNCC 1 cut(s) 714
SchI GAGTC 2 cut(s) 172, 1016
ScrFI CCNGG 1 cut(s) 1268
SfaNI GCATC 2 cut(s) 22, 187
SfcI CTRYAG 4 cut(s) 126, 982, 1062, 1316
SfuI TTCGAA 1 cut(s) 350
SinI GGWCC 1 cut(s) 714
SmiMI CAYNNNNRTG 1 cut(s) 1164
SphI GCATGC 1 cut(s) 122
SsiI CCGC 4 cut(s) 159, 449, 764, 801
SspMI CTAG 6 cut(s) 477, 666, 750, 857, 903, 1257
StyD4I CCNGG 1 cut(s) 1266
StyI CCWWGG 4 cut(s) 749, 1144, 1308, 1327
TaaI ACNGT 5 cut(s) 880, 919, 1129, 1134, 1298
TaiI ACGT 1 cut(s) 634
TaqI TCGA 3 cut(s) 201, 350, 387
TatI WGTACW 3 cut(s) 271, 619, 1129
TfiI GAWTC 1 cut(s) 931
Tru1I TTAA 3 cut(s) 641, 842, 1362
Tru9I TTAA 3 cut(s) 641, 842, 1362
TscAI CASTG 6 cut(s) 74, 471, 682, 840, 873, 1303
TseFI GTSAC 2 cut(s) 1047, 1261
Tsp45I GTSAC 2 cut(s) 1047, 1261
TspDTI ATGAA 5 cut(s) 125, 373, 674, 1182, 1293
TspGWI ACGGA 2 cut(s) 1048, 1312
TspRI CASTG 6 cut(s) 74, 471, 682, 840, 873, 1303
Van91I CCANNNNNTGG 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 714
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 3 cut(s) 211, 346, 1117
XbaI TCTAGA 1 cut(s) 476
XceI RCATGY 2 cut(s) 122, 626
XmaJI CCTAGG 1 cut(s) 749
XmnI GAANNNNTTC 2 cut(s) 282, 1040
XspI CTAG 6 cut(s) 477, 666, 750, 857, 903, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.