Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005156

Physical Location & Seq

Genomic Coordinates Forward (+)

21095538 .. 21096406

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0121400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCATCGGGTGCTTACCTAGTTGGTTACAGATTTCATCCTACAGACCTGGAATTGGTGGCTTACTACCTCCACAACCGGGCTGCCATGGTTGATCAGTTTCGCTCGAGTCCAATCTTTGATTTTCCTAATTTCTATGGCCAAAATGAGCCCTGGCTCATTTGGAACATGTTCTGTGCCCAATCCAACAGTACTATGAAGGAGGAGGAGGAAGAACCTCTATATTTCTTCACTCACCGCAAGAAATTGAATCCCAAAGCGAAAAAATTTGATAGGAAAGTGGGATCGGGAACATGGAGTGCCCAGTATTCAAAAAATGTTGTTGCTGCTGATGATGATAGTGTTATTGGAATTAAGAGAGAATTTCGGTATGAGGGTGGATCTGATCCACATCAAAATGGGGCTTGGTTGATGCAGGAGTACCAGATCACATCTCACAGTAATGATCTCGTTGACGGGACTAATATTTCCATTGCTGATTGTCCTAATGATACTTCATATGCCTATTTTGATTATGAAGTTGAGGAATTCTTTGGCTTGACTACTGATGATATATATGATGATGATGACTGTCAGTTTTCAAGTTCTGAAATACAGGCATTCTTAGCTTGTCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_2 Kelch_3 Kelch_4 Kelch_5 Kelch_6

Protein Analysis

206

Amino Acids

23.74

Weight (kDa)

4.46

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 143	6.9e-23	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04420 AT5G04420 AT5G04420
fragaria_vesca	FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590
malus_domestica	MD02G1242500.v1.1 MD07G1074000.v1.1
prunus_persica	Prupe.2G091900_v2.0.a1
pyrus_communis	pycom02g20920 pycom07g05810
rosa_chinensis	RchiOBHm_Chr1g0335251
rosa_laevigata	RLG00000029392
rosa_multiflora	Rmu_sc0002714.1_g000005
rosa_roxburghii	Rroxscaffold_3G00240470 Rroxscaffold_4G00316130 Rroxscaffold_4G00316210
rosa_rugosa	Rorug01G0121200 Rorug01G0121300 Rorug01G0121400
rosa_samantha	Rh1AG142800 Rh1BG111400 Rh1CG134600 Rh1DG148400
rosa_wichuraiana	Rw1G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	3 cut(s)	292, 380, 388
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	3 cut(s)	266, 362, 527
AfaI	GTAC	2 cut(s)	193, 422
AfiI	CCNNNNNNNGG	2 cut(s)	55, 79
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	3 cut(s)	250, 312, 582
AjnI	CCWGG	2 cut(s)	48, 152
AluBI	AGCT	1 cut(s)	608
AluI	AGCT	1 cut(s)	608
AlwI	GGATC	3 cut(s)	292, 380, 388
Ama87I	CYCGRG	1 cut(s)	106
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	83, 326
ApoI	RAATTY	3 cut(s)	266, 362, 527
Asp700I	GAANNNNTTC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	106
BaeGI	GKGCMC	2 cut(s)	181, 304
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	70, 313
BciT130I	CCWGG	2 cut(s)	50, 154
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	2 cut(s)	84, 327
BlsI	GCNGC	2 cut(s)	85, 328
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	3 cut(s)	50, 80, 154
BmeT110I	CYCGRG	1 cut(s)	106
BmrFI	CCNGG	3 cut(s)	50, 80, 154
BmrI	ACTGGG	1 cut(s)	298
BmsI	GCATC	2 cut(s)	14, 402
BmuI	ACTGGG	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	87, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 79
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	50, 154
BseDI	CCNNGG	2 cut(s)	87, 152
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	55, 79
BseMI	GCAATG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	218, 221
BseSI	GKGCMC	2 cut(s)	181, 304
BseXI	GCAGC	2 cut(s)	70, 313
BshFI	GGCC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	2 cut(s)	55, 79
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	106
Bsp1286I	GDGCHC	3 cut(s)	153, 181, 304
Bsp143I	GATC	6 cut(s)	94, 284, 380, 385, 426, 445
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	141
BspPI	GGATC	3 cut(s)	292, 380, 388
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	87, 152
BssMI	GATC	6 cut(s)	94, 284, 380, 385, 426, 445
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	50, 154
Bst4CI	ACNGT	3 cut(s)	191, 440, 572
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	604
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	6 cut(s)	97, 287, 383, 388, 429, 448
BstMBI	GATC	6 cut(s)	94, 284, 380, 385, 426, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 605
BstNI	CCWGG	2 cut(s)	50, 154
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	48, 78, 152
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	2 cut(s)	181, 304
BstV1I	GCAGC	2 cut(s)	70, 313
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	192, 421
CviAII	CATG	3 cut(s)	88, 169, 294
CviJI	RGCY	8 cut(s)	62, 83, 141, 151, 157, 404, 537, 608
CviKI_1	RGCY	8 cut(s)	62, 83, 141, 151, 157, 404, 537, 608
CviQI	GTAC	2 cut(s)	192, 421
DdeI	CTNAG	1 cut(s)	604
DpnI	GATC	6 cut(s)	96, 286, 382, 387, 428, 447
DpnII	GATC	6 cut(s)	94, 284, 380, 385, 426, 445
EaeI	YGGCCR	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	48, 152
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	91, 172, 297
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	3 cut(s)	87, 168, 293
FauNDI	CATATG	1 cut(s)	499
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	84, 327
FokI	GGATG	1 cut(s)	24
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	84, 327
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	2 cut(s)	84, 327
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	3 cut(s)	91, 172, 297
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	109, 250
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	2 cut(s)	385, 589
Hpy188III	TCNNGA	2 cut(s)	288, 614
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	191, 440, 572
HpyCH4V	TGCA	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 605
HpyF3I	CTNAG	1 cut(s)	604
Hsp92II	CATG	3 cut(s)	91, 172, 297
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	6 cut(s)	94, 284, 380, 385, 426, 445
Lsp1109I	GCAGC	2 cut(s)	70, 313
LweI	GCATC	2 cut(s)	14, 402
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	6 cut(s)	96, 286, 382, 387, 428, 447
MboI	GATC	6 cut(s)	94, 284, 380, 385, 426, 445
MboII	GAAGA	2 cut(s)	220, 224
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	3 cut(s)	153, 181, 304
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	7 cut(s)	53, 130, 245, 266, 351, 362, 527
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	7 cut(s)	80, 196, 199, 202, 228, 367, 517
Mox20I	TGGCCA	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	2 cut(s)	396, 441
Msp20I	TGGCCA	1 cut(s)	141
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	3 cut(s)	50, 80, 154
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	2 cut(s)	50, 154
MwoI	GCNNNNNNNGC	2 cut(s)	11, 605
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	6 cut(s)	94, 284, 380, 385, 426, 445
NlaIII	CATG	3 cut(s)	91, 172, 297
NspI	RCATGY	1 cut(s)	172
PaeR7I	CTCGAG	1 cut(s)	106
PciI	ACATGT	1 cut(s)	168
PctI	GAATGC	1 cut(s)	599
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	85, 328
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PscI	ACATGT	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	48, 152
PspGI	CCWGG	2 cut(s)	48, 152
PspXI	VCTCGAGB	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	2 cut(s)	193, 422
RsaNI	GTAC	2 cut(s)	192, 421
RseI	CAYNNNNRTG	2 cut(s)	396, 441
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	84, 327
Sau3AI	GATC	6 cut(s)	94, 284, 380, 385, 426, 445
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	50, 80, 154
SduI	GDGCHC	3 cut(s)	153, 181, 304
SetI	ASST	5 cut(s)	21, 51, 72, 220, 610
SfaNI	GCATC	2 cut(s)	14, 402
SfcI	CTRYAG	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	106
SmiMI	CAYNNNNRTG	2 cut(s)	396, 441
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	7 cut(s)	53, 130, 245, 266, 351, 362, 527
SsiI	CCGC	1 cut(s)	238
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	48, 78, 152
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	191, 440, 572
TaqI	TCGA	1 cut(s)	107
TasI	AATT	7 cut(s)	53, 130, 245, 266, 351, 362, 527
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseI	GCWGC	2 cut(s)	83, 326
TspDTI	ATGAA	4 cut(s)	26, 212, 486, 531
XapI	RAATTY	3 cut(s)	266, 362, 527
XceI	RCATGY	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.