Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005156

Physical Location & Seq

Genomic Coordinates Forward (+)

21085337 .. 21086619

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0121300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCCTTGAGAGGTGTGTGGCAACTGAAAAAAATGGTTGTGAGCTATTCTGATTGGGGAGGAAGCAGTAGAGGAATCAGGTCATTCATGGAGTCTTACCTACCTGCATTTAAGGAGAAGAATCCTCAGCTAGAGGTAGTTACTGAACACATTCGTGGTCAGCATCCTCATTTGAAGGGCTTATACATTTCCCTTCTTGATGTCAATGGACAGACAACCAAAATGAAAGGGTGGTATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_2 Kelch_3 Kelch_4 Kelch_5 Kelch_6

Protein Analysis

80

Amino Acids

9.21

Weight (kDa)

9.75

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
L51_S25_CI-B8	PF05047	26 - 63	2.2e-08	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04420 AT5G04420 AT5G04420
fragaria_vesca	FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590
malus_domestica	MD02G1242500.v1.1 MD07G1074000.v1.1
prunus_persica	Prupe.2G091900_v2.0.a1
pyrus_communis	pycom02g20920 pycom07g05810
rosa_chinensis	RchiOBHm_Chr1g0335251
rosa_laevigata	RLG00000029392
rosa_multiflora	Rmu_sc0002714.1_g000005
rosa_roxburghii	Rroxscaffold_3G00240470 Rroxscaffold_4G00316130 Rroxscaffold_4G00316210
rosa_rugosa	Rorug01G0121200 Rorug01G0121300 Rorug01G0121400
rosa_samantha	Rh1AG142800 Rh1BG111400 Rh1CG134600 Rh1DG148400
rosa_wichuraiana	Rw1G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	175
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	45, 130
AluI	AGCT	2 cut(s)	45, 130
AoxI	GGCC	1 cut(s)	3
Asp700I	GAANNNNTTC	1 cut(s)	150
BarI	GAAGNNNNNNTAC	2 cut(s)	167, 199
BbvCI	CCTCAGC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	112
BmsI	GCATC	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	112
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	4 cut(s)	5, 45, 130, 180
CviKI_1	RGCY	4 cut(s)	5, 45, 130, 180
DdeI	CTNAG	1 cut(s)	126
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	89, 184, 237
FatI	CATG	1 cut(s)	87
FokI	GGATG	1 cut(s)	150
FspBI	CTAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	3 cut(s)	75, 92, 121
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	169, 203
HpyCH4V	TGCA	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	91
LpnPI	CCDG	2 cut(s)	64, 117
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	6 cut(s)	5, 53, 65, 127, 135, 177
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	153
NlaIII	CATG	1 cut(s)	91
OliI	CACNNNNGTG	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	75, 121
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	111
SchI	GAGTC	1 cut(s)	101
SetI	ASST	7 cut(s)	16, 47, 83, 102, 106, 132, 138
SfaNI	GCATC	1 cut(s)	172
SgeI	CNNG	7 cut(s)	19, 91, 100, 116, 143, 167, 209
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
SspMI	CTAG	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	75, 121
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	76, 239
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.