Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005156

Physical Location & Seq

Genomic Coordinates Reverse (-)

21081747 .. 21083072

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0121200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGACAAAGATGAAAGAAACCCTCTCTACCAAAACAAAGGGTTTGCTTCTCGTTCATCATCTAGCTCTATTGGTCATGGGGTTTATGGTTTTAGCTCAAGGGAAACTGAAACAGGCTTCGAGTGTCCAAAATTGTAGAAATGACTCTGCAGCATTCTACATATTGGGGGATTCCTCTGTTGATTGCGGAGACAACACGCTCTTTTACCCTCTCATTCACAGTTATCTGTCCTTGTATTCGTGTAATGGTTCCGATGGCTCAACTCTTATTCCCCATCTTCTTGCTGAGAAGATGGGCATGCAAAACATTTTACCATTCTACAGTCAAAATGGATCCATTAATGGAATACAAAGAGGCCTTAACTTCGGTTCAGCACATGCAACGATCTTGAATCACGGCAGCCAGAGTTATCAGTCTGTGAACCAGCAGCTCCGCCAAGTTTTTGATTCTATGCAACTCTTACAATTGCAGCTTAGCGAGGACAGAGCTCTCAGTTTCATCAAATCTTCCATCTTCTACCTCTCCTTTGGCAAAGATGACTTCATAGAGCTCTTCCTACGCAATGCCTCGGGTACTGCAAAACAGAATAATACCGATCAAGAATTTTCACACATTTTAGCAGATCAGATGGTACATGTTATACGGAACCTTTATGACATGAATGTGAGGAGGATCATATGCATGGGAATATTGCCGTTGGGATGCACCCCGCGGGTGTTATTGAACAAGTACAATTCCACAGCCCATCCAAATGAAGATGATGATGATGATGTTCCAAGGGGATGTGTAGAGGAGATTAATGCGCAGGTCATAGAGTACAACAGAGAGCTGAATGAGCAAATCTCTGAGCTTCATGCAGAGTTGCCTGATGCACAGCTTCTGTTTTGTGATGTTTACCAAGGACTTACAACGATCATAAACAACCCAGAACAATATGGATTTGAGGATGTAAAGAATGCTTGCTGCGGGCTTGGTATGTATGGAGCAGAAATTGGATGCCTCTCTAAAGATATGGCATGTGACAAAGAAGCTAGTCATGTGTGGTGGGATTTATACAATCCTACAAAGGCAGTGAACTCATTGCTGGCTGATTCAGCCTGGTCGAGCTATCCGCTTCGGATTTGTCGTCCTATGAGCATCCAGGAATTTTTTACTGCTTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_2 Kelch_3 Kelch_4 Kelch_5 Kelch_6

Protein Analysis

388

Amino Acids

43.39

Weight (kDa)

5.18

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	53 - 364	1.7e-21	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04420 AT5G04420 AT5G04420
fragaria_vesca	FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590
malus_domestica	MD02G1242500.v1.1 MD07G1074000.v1.1
prunus_persica	Prupe.2G091900_v2.0.a1
pyrus_communis	pycom02g20920 pycom07g05810
rosa_chinensis	RchiOBHm_Chr1g0335251
rosa_laevigata	RLG00000029392
rosa_multiflora	Rmu_sc0002714.1_g000005
rosa_roxburghii	Rroxscaffold_3G00240470 Rroxscaffold_4G00316130 Rroxscaffold_4G00316210
rosa_rugosa	Rorug01G0121200 Rorug01G0121300 Rorug01G0121400
rosa_samantha	Rh1AG142800 Rh1BG111400 Rh1CG134600 Rh1DG148400
rosa_wichuraiana	Rw1G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	804
Acc36I	ACCTGC	1 cut(s)	796
AccII	CGCG	1 cut(s)	712
AciI	CCGC	6 cut(s)	186, 433, 710, 712, 966, 1112
AclWI	GGATC	3 cut(s)	327, 340, 680
AcsI	RAATTY	2 cut(s)	602, 1145
AcuI	CTGAAG	1 cut(s)	1143
AfaI	GTAC	4 cut(s)	574, 633, 731, 818
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	2 cut(s)	391, 724
AjnI	CCWGG	2 cut(s)	1097, 1140
Alw21I	GWGCWC	2 cut(s)	490, 552
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	3 cut(s)	327, 340, 680
AlwNI	CAGNNNCTG	1 cut(s)	880
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	5 cut(s)	149, 399, 427, 469, 963
ApoI	RAATTY	2 cut(s)	602, 1145
AseI	ATTAAT	2 cut(s)	339, 798
AspLEI	GCGC	1 cut(s)	805
AvaI	CYCGRG	1 cut(s)	568
BamHI	GGATCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	490, 552
Bbv12I	GWGCWC	2 cut(s)	490, 552
BbvI	GCAGC	5 cut(s)	161, 411, 439, 481, 950
BccI	CCATC	6 cut(s)	248, 282, 286, 518, 622, 753
BceAI	ACGGC	2 cut(s)	412, 679
BciT130I	CCWGG	2 cut(s)	1099, 1142
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	62, 1032
BfmI	CTRYAG	2 cut(s)	147, 319
BfuAI	ACCTGC	1 cut(s)	796
BisI	GCNGC	5 cut(s)	150, 400, 428, 470, 964
BlpI	GCTNAGC	1 cut(s)	473
BlsI	GCNGC	5 cut(s)	151, 401, 429, 471, 965
Bme1390I	CCNGG	2 cut(s)	1099, 1142
BmeT110I	CYCGRG	1 cut(s)	568
BmiI	GGNNCC	3 cut(s)	250, 334, 647
BmrFI	CCNGG	2 cut(s)	1099, 1142
BmsI	GCATC	4 cut(s)	692, 859, 986, 1146
BplI	GAGNNNNNCTC	2 cut(s)	827, 859
Bpu1102I	GCTNAGC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	81
BsaJI	CCNNGG	4 cut(s)	567, 710, 776, 898
Bse3DI	GCAATG	2 cut(s)	568, 1079
BseBI	CCWGG	2 cut(s)	1099, 1142
BseDI	CCNNGG	4 cut(s)	567, 710, 776, 898
BseGI	GGATG	6 cut(s)	707, 745, 788, 952, 1001, 1137
BseMI	GCAATG	2 cut(s)	568, 1079
BseMII	CTCAG	3 cut(s)	276, 505, 837
BseRI	GAGGAG	2 cut(s)	682, 806
BseXI	GCAGC	5 cut(s)	161, 411, 439, 481, 950
Bsh1236I	CGCG	1 cut(s)	712
BshFI	GGCC	1 cut(s)	357
BsiHKAI	GWGCWC	2 cut(s)	490, 552
BsiHKCI	CYCGRG	1 cut(s)	568
BsmAI	GTCTC	1 cut(s)	183
BsmI	GAATGC	2 cut(s)	152, 961
BsnI	GGCC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	490, 552
Bsp143I	GATC	6 cut(s)	332, 384, 595, 622, 672, 912
Bsp1720I	GCTNAGC	1 cut(s)	473
BspACI	CCGC	6 cut(s)	186, 433, 710, 712, 966, 1112
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	3 cut(s)	277, 504, 838
BspFNI	CGCG	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	250, 334, 647
BspMAI	CTGCAG	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	796
BspPI	GGATC	3 cut(s)	327, 340, 680
BspQI	GCTCTTC	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	568, 1079
BssECI	CCNNGG	4 cut(s)	567, 710, 776, 898
BssMI	GATC	6 cut(s)	332, 384, 595, 622, 672, 912
BssT1I	CCWWGG	2 cut(s)	776, 898
Bst2UI	CCWGG	2 cut(s)	1099, 1142
Bst4CI	ACNGT	2 cut(s)	221, 323
Bst6I	CTCTTC	1 cut(s)	557
BstC8I	GCNNGC	4 cut(s)	299, 961, 968, 1086
BstDEI	CTNAG	4 cut(s)	285, 473, 491, 846
BstDSI	CCRYGG	1 cut(s)	710
BstF5I	GGATG	6 cut(s)	707, 745, 788, 952, 1001, 1137
BstFNI	CGCG	1 cut(s)	712
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	6 cut(s)	335, 387, 598, 625, 675, 915
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	6 cut(s)	332, 384, 595, 622, 672, 912
BstMWI	GCNNNNNNNGC	2 cut(s)	835, 1094
BstNI	CCWGG	2 cut(s)	1099, 1142
BstNSI	RCATGY	4 cut(s)	301, 380, 638, 1020
BstSCI	CCNGG	2 cut(s)	1097, 1140
BstSFI	CTRYAG	2 cut(s)	147, 319
BstUI	CGCG	1 cut(s)	712
BstV1I	GCAGC	5 cut(s)	161, 411, 439, 481, 950
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	710
BtsCI	GGATG	6 cut(s)	707, 745, 788, 952, 1001, 1137
BtsI	GCAGTG	1 cut(s)	1077
BtsIMutI	CAGTG	1 cut(s)	1077
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	4 cut(s)	299, 961, 968, 1086
CaiI	CAGNNNCTG	1 cut(s)	880
CfoI	GCGC	1 cut(s)	805
Cfr42I	CCGCGG	1 cut(s)	713
Csp6I	GTAC	4 cut(s)	573, 632, 730, 817
CviAII	CATG	9 cut(s)	76, 298, 377, 635, 658, 682, 854, 1017, 1037
CviQI	GTAC	4 cut(s)	573, 632, 730, 817
DdeI	CTNAG	4 cut(s)	285, 473, 491, 846
DpnI	GATC	6 cut(s)	334, 386, 597, 624, 674, 914
DpnII	GATC	6 cut(s)	332, 384, 595, 622, 672, 912
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
EciI	GGCGGA	1 cut(s)	422
Ecl136II	GAGCTC	2 cut(s)	488, 550
Eco130I	CCWWGG	2 cut(s)	776, 898
Eco147I	AGGCCT	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	490, 552
Eco53kI	GAGCTC	2 cut(s)	488, 550
Eco57I	CTGAAG	1 cut(s)	1143
Eco88I	CYCGRG	1 cut(s)	568
EcoICRI	GAGCTC	2 cut(s)	488, 550
EcoRII	CCWGG	2 cut(s)	1097, 1140
EcoT14I	CCWWGG	2 cut(s)	776, 898
EcoT22I	ATGCAT	1 cut(s)	683
EcoT38I	GRGCYC	2 cut(s)	490, 552
ErhI	CCWWGG	2 cut(s)	776, 898
FaeI	CATG	9 cut(s)	79, 301, 380, 638, 661, 685, 857, 1020, 1040
FatI	CATG	9 cut(s)	75, 297, 376, 634, 657, 681, 853, 1016, 1036
FauI	CCCGC	3 cut(s)	705, 717, 959
FauNDI	CATATG	1 cut(s)	677
Fnu4HI	GCNGC	5 cut(s)	150, 400, 428, 470, 964
FokI	GGATG	6 cut(s)	714, 732, 795, 959, 1008, 1124
FriOI	GRGCYC	2 cut(s)	490, 552
Fsp4HI	GCNGC	5 cut(s)	150, 400, 428, 470, 964
FspBI	CTAG	2 cut(s)	62, 1032
FspI	TGCGCA	1 cut(s)	804
GlaI	GCGC	1 cut(s)	804
GluI	GCNGC	5 cut(s)	150, 400, 428, 470, 964
HaeIII	GGCC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	9 cut(s)	79, 301, 380, 638, 661, 685, 857, 1020, 1040
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HinfI	GANTC	5 cut(s)	143, 170, 391, 446, 1091
Hpy166II	GTNNAC	3 cut(s)	421, 895, 1075
Hpy188I	TCNGA	4 cut(s)	253, 627, 847, 1119
Hpy188III	TCNNGA	2 cut(s)	388, 599
Hpy8I	GTNNAC	3 cut(s)	421, 895, 1075
HpyCH4III	ACNGT	2 cut(s)	221, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	835, 1094
HpyF3I	CTNAG	4 cut(s)	285, 473, 491, 846
Hsp92II	CATG	9 cut(s)	79, 301, 380, 638, 661, 685, 857, 1020, 1040
HspAI	GCGC	1 cut(s)	803
KspI	CCGCGG	1 cut(s)	713
Kzo9I	GATC	6 cut(s)	332, 384, 595, 622, 672, 912
LguI	GCTCTTC	1 cut(s)	557
LmnI	GCTCC	2 cut(s)	435, 983
Lsp1109I	GCAGC	5 cut(s)	161, 411, 439, 481, 950
LweI	GCATC	4 cut(s)	692, 859, 986, 1146
MaeI	CTAG	2 cut(s)	62, 1032
MaeIII	GTNAC	1 cut(s)	1019
MalI	GATC	6 cut(s)	334, 386, 597, 624, 674, 914
MboI	GATC	6 cut(s)	332, 384, 595, 622, 672, 912
MboII	GAAGA	6 cut(s)	269, 301, 498, 505, 544, 767
MfeI	CAATTG	1 cut(s)	464
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	2 cut(s)	490, 552
MluCI	AATT	6 cut(s)	130, 464, 602, 733, 990, 1145
MlyI	GAGTC	1 cut(s)	137
Mph1103I	ATGCAT	1 cut(s)	683
MseI	TTAA	4 cut(s)	339, 360, 798, 1165
MslI	CAYNNNNRTG	3 cut(s)	662, 680, 750
MspA1I	CMGCKG	1 cut(s)	712
MspR9I	CCNGG	2 cut(s)	1099, 1142
MunI	CAATTG	1 cut(s)	464
Mva1269I	GAATGC	2 cut(s)	152, 961
MvaI	CCWGG	2 cut(s)	1099, 1142
MvnI	CGCG	1 cut(s)	712
MwoI	GCNNNNNNNGC	2 cut(s)	835, 1094
NdeI	CATATG	1 cut(s)	677
NdeII	GATC	6 cut(s)	332, 384, 595, 622, 672, 912
NlaIII	CATG	9 cut(s)	79, 301, 380, 638, 661, 685, 857, 1020, 1040
NlaIV	GGNNCC	3 cut(s)	250, 334, 647
NmuCI	GTSAC	1 cut(s)	1019
NsbI	TGCGCA	1 cut(s)	804
NsiI	ATGCAT	1 cut(s)	683
NspI	RCATGY	4 cut(s)	301, 380, 638, 1020
PaeI	GCATGC	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	357
PciI	ACATGT	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	1123
PctI	GAATGC	2 cut(s)	152, 961
PfeI	GAWTC	4 cut(s)	170, 391, 446, 1091
PfoI	TCCNGGA	1 cut(s)	1140
PkrI	GCNGC	5 cut(s)	151, 401, 429, 471, 965
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PscI	ACATGT	1 cut(s)	634
PshBI	ATTAAT	2 cut(s)	339, 798
Psp124BI	GAGCTC	2 cut(s)	490, 552
Psp6I	CCWGG	2 cut(s)	1097, 1140
PspGI	CCWGG	2 cut(s)	1097, 1140
PspN4I	GGNNCC	3 cut(s)	250, 334, 647
PstI	CTGCAG	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	880
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	4 cut(s)	574, 633, 731, 818
RsaNI	GTAC	4 cut(s)	573, 632, 730, 817
RseI	CAYNNNNRTG	3 cut(s)	662, 680, 750
SacI	GAGCTC	2 cut(s)	490, 552
SacII	CCGCGG	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	557
SaqAI	TTAA	4 cut(s)	339, 360, 798, 1165
SatI	GCNGC	5 cut(s)	150, 400, 428, 470, 964
Sau3AI	GATC	6 cut(s)	332, 384, 595, 622, 672, 912
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	1099, 1142
SduI	GDGCHC	2 cut(s)	490, 552
SfaNI	GCATC	4 cut(s)	692, 859, 986, 1146
SfcI	CTRYAG	2 cut(s)	147, 319
Sfr303I	CCGCGG	1 cut(s)	713
SgrBI	CCGCGG	1 cut(s)	713
SmiMI	CAYNNNNRTG	3 cut(s)	662, 680, 750
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	6 cut(s)	130, 464, 602, 733, 990, 1145
SseBI	AGGCCT	1 cut(s)	357
SsiI	CCGC	6 cut(s)	186, 433, 710, 712, 966, 1112
SspI	AATATT	1 cut(s)	690
SspMI	CTAG	2 cut(s)	62, 1032
SstI	GAGCTC	2 cut(s)	490, 552
StuI	AGGCCT	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	1097, 1140
StyI	CCWWGG	2 cut(s)	776, 898
TaaI	ACNGT	2 cut(s)	221, 323
TaqI	TCGA	2 cut(s)	119, 1103
TasI	AATT	6 cut(s)	130, 464, 602, 733, 990, 1145
TatI	WGTACW	2 cut(s)	729, 816
TfiI	GAWTC	4 cut(s)	170, 391, 446, 1091
Tru1I	TTAA	4 cut(s)	339, 360, 798, 1165
Tru9I	TTAA	4 cut(s)	339, 360, 798, 1165
TscAI	CASTG	1 cut(s)	1077
TseFI	GTSAC	1 cut(s)	1019
TseI	GCWGC	5 cut(s)	149, 399, 427, 469, 963
Tsp45I	GTSAC	1 cut(s)	1019
TspDTI	ATGAA	7 cut(s)	26, 44, 487, 532, 674, 768, 842
TspGWI	ACGGA	1 cut(s)	658
TspRI	CASTG	1 cut(s)	1077
VspI	ATTAAT	2 cut(s)	339, 798
XapI	RAATTY	2 cut(s)	602, 1145
XceI	RCATGY	4 cut(s)	301, 380, 638, 1020
XspI	CTAG	2 cut(s)	62, 1032
Zsp2I	ATGCAT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.