Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005156

Physical Location & Seq

Genomic Coordinates Reverse (-)

14477857 .. 14484340

Gene Structure 6484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G091900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGGTGACGGCTTCTATGGGAACAGAAGAGATTAAGAAAGATGTCAATGGCAGCAATTGGCAAACAGATTTGGCCTATGACCAGTGGAAAGCACTCCCTGTTTCTGGTCCACGACCACCGGCTCGCTACAAGCATGCTGCTGTAGTAGTCGATGAAAAATTATACATTATTGGTGGGAGTCGTAATGGTAGGCACCTATCCGATGTTCAGGTCTTTGACTTTAGAAATTTGTTATGGTCTAATATAAAACTGAAACCCAATTCCGATAAATTTGAAGACAGTGGCTTGCAGGAAGTTCTTCCAGCCATCTCTGCTCATAATATGGTTAAGTGGGGAAACAAAATTCTTCTTCTTGGTGGAAATTCGAAGAAATTGTCTGACAAAATAATAGTGTGGGTCATTGATCTGGAAACGCACCTCTGTGGCATCGTGGAGACCTCAGGAAAAGTTCCGGTAGCTCGTGGGGGGCAGTCCACAACACTGGTTGGTTCTAGACTGATAATGTTCGGTGGAGAAGACAGGAGTAGAAGATTGTGGAATGATGTTAATATTCTGGATCTAGAGACAATGACCTGGGATGTGGTGGAAGCAATGCAGACACCTCCAGCTCCCAGATTCGATCACACAGCTGCAGTACATGCAGAACGCTACCTTCAAATTTTTGGTGGTTGTTCTCATGATACTTTCTTCAATGATCTTCATGTACTTGACTTGCAAACAATGGAGTGGTCCCAGCCACAAGTTCAGGGTGAACTTGTCACTCCTAGGGCTGGTCATGCTGGTATAACAATTGATGAAAACTGGTATATAGTTGGCGGTGGAGATAACAAAAATGGTTGCCCAGAAACTCTGGTATTAAATATGTCTAAGCTAGTGTGGTCAGTGCCAACCAGTGTGAAGCACAGGGATGCACTTGCAAGTGAGGGACTCAGTGTCTGCTCAGTGACTATTGATGGAAAGAAGCATTTGGTTGCCTTTGGTGGCTATAATGGGAACTATAGCAATGAGGTTTTTGTAATGATGCCCAAACCGAGGGACTCATTACAACCAAAGATATTCCAGTCACCAGCAGCAGCTGCAGCAGCAGCTTCTGTCACTGCTGCATATGCCTTAACTAAAATAGACAAATTAGATTTCAAGACAGCAGAATTGAACTCCAAGGGGGCTGAAAACCATCATTATGAACAAGATTTCACAATTGACCTAGAAACACTTACAGAGGAGAAAAGCGTGCTGGAATTGTCGCTTTCACAAGTCAAGACAGAAAATTCTAGGCTCGGGCAGGAGATTGAAGAAGTCAACAATACTCATGCTGAGTTGTCCAAGGAACTTCATTCAGTCCAAGGGCAACTAATAGCTGAGAGATCAAGATGCTTTAAATTGGAGGCTCAAATCAGTGAACTACAAAAGAAACTGGAATCGGTGCAGTCCATTGAGGATGAAGTACAGGCACTTCGGGGACAAAAATCTGCATTGGAACAAGATATGGAGCTTGCCTCATCTGGTCAGAGACAAGGTTCTGGCGGGGTTTGGCGGTGGATTGCTGGGGGTGGCGGCGGCGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_2 Kelch_3 Kelch_4 Kelch_5 Kelch_6

Protein Analysis

523

Amino Acids

57.48

Weight (kDa)

5.53

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04420 AT5G04420 AT5G04420
fragaria_vesca	FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590
malus_domestica	MD02G1242500.v1.1 MD07G1074000.v1.1
prunus_persica	Prupe.2G091900_v2.0.a1
pyrus_communis	pycom02g20920 pycom07g05810
rosa_chinensis	RchiOBHm_Chr1g0335251
rosa_laevigata	RLG00000029392
rosa_multiflora	Rmu_sc0002714.1_g000005
rosa_roxburghii	Rroxscaffold_3G00240470 Rroxscaffold_4G00316130 Rroxscaffold_4G00316210
rosa_rugosa	Rorug01G0121200 Rorug01G0121300 Rorug01G0121400
rosa_samantha	Rh1AG142800 Rh1BG111400 Rh1CG134600 Rh1DG148400
rosa_wichuraiana	Rw1G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	192
AciI	CCGC	5 cut(s)	816, 1524, 1534, 1554, 1557
AclWI	GGATC	1 cut(s)	564
AcsI	RAATTY	6 cut(s)	226, 269, 342, 361, 657, 1267
AfaI	GTAC	3 cut(s)	636, 705, 1446
AfiI	CCNNNNNNNGG	3 cut(s)	104, 770, 1032
AgsI	TTSAA	6 cut(s)	275, 656, 691, 1138, 1153, 1292
AhdI	GACNNNNNGTC	1 cut(s)	932
AjnI	CCWGG	1 cut(s)	572
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	8 cut(s)	458, 608, 629, 871, 1076, 1088, 1358, 1492
AluI	AGCT	8 cut(s)	458, 608, 629, 871, 1076, 1088, 1358, 1492
Alw26I	GTCTC	3 cut(s)	428, 557, 1504
AlwI	GGATC	1 cut(s)	564
AlwNI	CAGNNNCTG	3 cut(s)	936, 1076, 1091
Ama87I	CYCGRG	1 cut(s)	1277
AoxI	GGCC	1 cut(s)	72
ApoI	RAATTY	6 cut(s)	226, 269, 342, 361, 657, 1267
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
Asp700I	GAANNNNTTC	1 cut(s)	297
AspA2I	CCTAGG	1 cut(s)	764
AspS9I	GGNCC	2 cut(s)	107, 729
AsuHPI	GGTGA	3 cut(s)	16, 761, 1056
AsuII	TTCGAA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	1277
AvaII	GGWCC	2 cut(s)	107, 729
AvrII	CCTAGG	1 cut(s)	764
AxyI	CCTNAGG	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	192
BarI	GAAGNNNNNNTAC	2 cut(s)	1437, 1469
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	282, 522
BccI	CCATC	3 cut(s)	314, 947, 1182
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	574
BcoDI	GTCTC	3 cut(s)	428, 557, 1504
BfaI	CTAG	6 cut(s)	492, 560, 765, 872, 1205, 1272
BfmI	CTRYAG	4 cut(s)	141, 630, 997, 1077
BlnI	CCTAGG	1 cut(s)	764
Bme1390I	CCNGG	1 cut(s)	574
Bme18I	GGWCC	2 cut(s)	107, 729
BmeRI	GACNNNNNGTC	1 cut(s)	932
BmeT110I	CYCGRG	1 cut(s)	1277
BmgT120I	GGNCC	2 cut(s)	107, 729
BmiI	GGNNCC	2 cut(s)	194, 731
BmrFI	CCNGG	1 cut(s)	574
BmsI	GCATC	5 cut(s)	435, 898, 1011, 1361, 1552
BpiI	GAAGAC	2 cut(s)	282, 522
BplI	GAGNNNNNCTC	2 cut(s)	1481, 1513
BpmI	CTGGAG	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	6 cut(s)	573, 764, 1031, 1158, 1323, 1342
BsaWI	WCCGGW	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 770, 1032
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	6 cut(s)	82, 486, 806, 891, 1060, 1419
Bse21I	CCTNAGG	1 cut(s)	439
Bse3DI	GCAATG	2 cut(s)	597, 1009
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	6 cut(s)	573, 764, 1031, 1158, 1323, 1342
BseGI	GGATG	3 cut(s)	583, 913, 1444
BseLI	CCNNNNNNNGG	3 cut(s)	104, 770, 1032
BseMI	GCAATG	2 cut(s)	597, 1009
BseMII	CTCAG	5 cut(s)	453, 943, 954, 1305, 1350
BseNI	ACTGG	6 cut(s)	82, 486, 806, 891, 1060, 1419
BseRI	GAGGAG	1 cut(s)	1235
BseYI	CCCAGC	2 cut(s)	732, 1544
BsgI	GTGCAG	1 cut(s)	1445
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	1277
BsiSI	CCGG	2 cut(s)	119, 452
BslFI	GGGAC	4 cut(s)	715, 939, 1049, 1473
BslI	CCNNNNNNNGG	3 cut(s)	104, 770, 1032
BsmAI	GTCTC	3 cut(s)	428, 557, 1504
BsmFI	GGGAC	4 cut(s)	715, 939, 1049, 1473
BsnI	GGCC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	1277
Bsp119I	TTCGAA	1 cut(s)	365
Bsp143I	GATC	5 cut(s)	403, 556, 619, 694, 1364
BspACI	CCGC	5 cut(s)	816, 1524, 1534, 1554, 1557
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	5 cut(s)	452, 942, 953, 1306, 1351
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	2 cut(s)	194, 731
BspMAI	CTGCAG	2 cut(s)	634, 1081
BspPI	GGATC	1 cut(s)	564
BspT104I	TTCGAA	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	597, 1009
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	6 cut(s)	82, 486, 806, 891, 1060, 1419
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	6 cut(s)	573, 764, 1031, 1158, 1323, 1342
BssMI	GATC	5 cut(s)	403, 556, 619, 694, 1364
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	4 cut(s)	764, 1158, 1323, 1342
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	2 cut(s)	638, 1076
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	5 cut(s)	124, 135, 287, 1232, 1494
BstDEI	CTNAG	6 cut(s)	439, 867, 929, 940, 1314, 1359
BstF5I	GGATG	3 cut(s)	583, 913, 1444
BstKTI	GATC	5 cut(s)	406, 559, 622, 697, 1367
BstMAI	GTCTC	3 cut(s)	428, 557, 1504
BstMBI	GATC	5 cut(s)	403, 556, 619, 694, 1364
BstMWI	GCNNNNNNNGC	8 cut(s)	311, 638, 776, 1076, 1079, 1082, 1085, 1106
BstNI	CCWGG	1 cut(s)	574
BstNSI	RCATGY	2 cut(s)	137, 641
BstSCI	CCNGG	1 cut(s)	572
BstSFI	CTRYAG	4 cut(s)	141, 630, 997, 1077
BstV2I	GAAGAC	2 cut(s)	282, 522
BstX2I	RGATCY	1 cut(s)	556
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	583, 913, 1444
BtsI	GCAGTG	1 cut(s)	1095
BtsIMutI	CAGTG	9 cut(s)	89, 286, 479, 888, 898, 937, 948, 1095, 1402
Cac8I	GCNNGC	5 cut(s)	124, 135, 287, 1232, 1494
CaiI	CAGNNNCTG	3 cut(s)	936, 1076, 1091
CciI	TCATGA	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	107, 729
Csp6I	GTAC	3 cut(s)	635, 704, 1445
CviAII	CATG	6 cut(s)	134, 638, 677, 701, 776, 1310
CviQI	GTAC	3 cut(s)	635, 704, 1445
DdeI	CTNAG	6 cut(s)	439, 867, 929, 940, 1314, 1359
DpnI	GATC	5 cut(s)	405, 558, 621, 696, 1366
DpnII	GATC	5 cut(s)	403, 556, 619, 694, 1364
DraI	TTTAAA	1 cut(s)	1378
DriI	GACNNNNNGTC	1 cut(s)	932
Eam1104I	CTCTTC	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	932
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	4 cut(s)	764, 1158, 1323, 1342
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	107, 729
Eco81I	CCTNAGG	1 cut(s)	439
Eco88I	CYCGRG	1 cut(s)	1277
EcoRII	CCWGG	1 cut(s)	572
EcoT14I	CCWWGG	4 cut(s)	764, 1158, 1323, 1342
EcoT22I	ATGCAT	1 cut(s)	1567
ErhI	CCWWGG	4 cut(s)	764, 1158, 1323, 1342
FaeI	CATG	6 cut(s)	137, 641, 680, 704, 779, 1313
FaqI	GGGAC	4 cut(s)	715, 939, 1049, 1473
FatI	CATG	6 cut(s)	133, 637, 676, 700, 775, 1309
FauI	CCCGC	1 cut(s)	1517
FauNDI	CATATG	1 cut(s)	1105
FokI	GGATG	3 cut(s)	590, 920, 1451
FspBI	CTAG	6 cut(s)	492, 560, 765, 872, 1205, 1272
GsaI	CCCAGC	2 cut(s)	736, 1548
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	2 cut(s)	119, 452
Hin1II	CATG	6 cut(s)	137, 641, 680, 704, 779, 1313
HincII	GTYRAC	1 cut(s)	1300
HindII	GTYRAC	1 cut(s)	1300
HinfI	GANTC	5 cut(s)	178, 615, 927, 1037, 1418
HpaII	CCGG	2 cut(s)	119, 452
HphI	GGTGA	3 cut(s)	16, 761, 1056
Hpy166II	GTNNAC	5 cut(s)	110, 474, 752, 1300, 1400
Hpy188I	TCNGA	4 cut(s)	202, 265, 379, 1509
Hpy188III	TCNNGA	9 cut(s)	407, 441, 492, 554, 560, 677, 1138, 1258, 1368
Hpy8I	GTNNAC	5 cut(s)	110, 474, 752, 1300, 1400
HpyAV	CCTTC	1 cut(s)	662
HpyCH4III	ACNGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	8 cut(s)	311, 638, 776, 1076, 1079, 1082, 1085, 1106
HpyF3I	CTNAG	6 cut(s)	439, 867, 929, 940, 1314, 1359
Hsp92II	CATG	6 cut(s)	137, 641, 680, 704, 779, 1313
Kzo9I	GATC	5 cut(s)	403, 556, 619, 694, 1364
LmnI	GCTCC	2 cut(s)	613, 1489
LweI	GCATC	5 cut(s)	435, 898, 1011, 1361, 1552
MaeI	CTAG	6 cut(s)	492, 560, 765, 872, 1205, 1272
MaeIII	GTNAC	5 cut(s)	4, 757, 943, 1062, 1093
MalI	GATC	5 cut(s)	405, 558, 621, 696, 1366
MboI	GATC	5 cut(s)	403, 556, 619, 694, 1364
MfeI	CAATTG	3 cut(s)	55, 789, 1197
MflI	RGATCY	1 cut(s)	556
MlyI	GAGTC	3 cut(s)	187, 921, 1031
Mph1103I	ATGCAT	1 cut(s)	1567
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	6 cut(s)	33, 327, 546, 857, 1112, 1377
MslI	CAYNNNNRTG	3 cut(s)	420, 906, 1179
MspA1I	CMGCKG	2 cut(s)	629, 1076
MspI	CCGG	2 cut(s)	119, 452
MspR9I	CCNGG	1 cut(s)	574
MunI	CAATTG	3 cut(s)	55, 789, 1197
MvaI	CCWGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	8 cut(s)	311, 638, 776, 1076, 1079, 1082, 1085, 1106
NdeI	CATATG	1 cut(s)	1105
NdeII	GATC	5 cut(s)	403, 556, 619, 694, 1364
NlaIII	CATG	6 cut(s)	137, 641, 680, 704, 779, 1313
NlaIV	GGNNCC	2 cut(s)	194, 731
NmuCI	GTSAC	5 cut(s)	4, 757, 943, 1062, 1093
NsiI	ATGCAT	1 cut(s)	1567
NspI	RCATGY	2 cut(s)	137, 641
NspV	TTCGAA	1 cut(s)	365
OliI	CACNNNNGTG	1 cut(s)	420
PaeI	GCATGC	1 cut(s)	137
PagI	TCATGA	1 cut(s)	676
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	615, 1418
PleI	GAGTC	3 cut(s)	186, 921, 1031
PpsI	GAGTC	3 cut(s)	186, 921, 1031
Psp6I	CCWGG	1 cut(s)	572
PspFI	CCCAGC	2 cut(s)	732, 1544
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	2 cut(s)	194, 731
PspPI	GGNCC	2 cut(s)	107, 729
PstI	CTGCAG	2 cut(s)	634, 1081
PstNI	CAGNNNCTG	3 cut(s)	936, 1076, 1091
PsuI	RGATCY	1 cut(s)	556
PvuII	CAGCTG	2 cut(s)	629, 1076
RsaI	GTAC	3 cut(s)	636, 705, 1446
RsaNI	GTAC	3 cut(s)	635, 704, 1445
RseI	CAYNNNNRTG	3 cut(s)	420, 906, 1179
SaqAI	TTAA	6 cut(s)	33, 327, 546, 857, 1112, 1377
Sau3AI	GATC	5 cut(s)	403, 556, 619, 694, 1364
Sau96I	GGNCC	2 cut(s)	107, 729
SchI	GAGTC	3 cut(s)	187, 921, 1031
ScrFI	CCNGG	1 cut(s)	574
SfaNI	GCATC	5 cut(s)	435, 898, 1011, 1361, 1552
SfcI	CTRYAG	4 cut(s)	141, 630, 997, 1077
SfuI	TTCGAA	1 cut(s)	365
SinI	GGWCC	2 cut(s)	107, 729
SmiMI	CAYNNNNRTG	3 cut(s)	420, 906, 1179
SphI	GCATGC	1 cut(s)	137
SsiI	CCGC	5 cut(s)	816, 1524, 1534, 1554, 1557
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	6 cut(s)	492, 560, 765, 872, 1205, 1272
StyD4I	CCNGG	1 cut(s)	572
StyI	CCWWGG	4 cut(s)	764, 1158, 1323, 1342
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	3 cut(s)	150, 365, 618
TatI	WGTACW	3 cut(s)	634, 703, 1444
TauI	GCSGC	2 cut(s)	1557, 1560
TfiI	GAWTC	2 cut(s)	615, 1418
Tru1I	TTAA	6 cut(s)	33, 327, 546, 857, 1112, 1377
Tru9I	TTAA	6 cut(s)	33, 327, 546, 857, 1112, 1377
TscAI	CASTG	9 cut(s)	89, 286, 486, 888, 898, 937, 948, 1102, 1402
TseFI	GTSAC	5 cut(s)	4, 757, 943, 1062, 1093
Tsp45I	GTSAC	5 cut(s)	4, 757, 943, 1062, 1093
TspDTI	ATGAA	6 cut(s)	168, 689, 810, 1197, 1322, 1455
TspRI	CASTG	9 cut(s)	89, 286, 486, 888, 898, 937, 948, 1102, 1402
VpaK11BI	GGWCC	2 cut(s)	107, 729
XapI	RAATTY	6 cut(s)	226, 269, 342, 361, 657, 1267
XbaI	TCTAGA	2 cut(s)	491, 559
XceI	RCATGY	2 cut(s)	137, 641
XmaJI	CCTAGG	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	6 cut(s)	492, 560, 765, 872, 1205, 1272
Zsp2I	ATGCAT	1 cut(s)	1567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.