FvH4_7g07900

POT family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
7795522 .. 7799128
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07900.t1

Sequence Viewer

Length: 1827 bp
ATGGGCATCTTAAACAGTTTCCAGGACCATCAGGGCTATGTTGAAGAAGAAAATAGCCAAAAGAAGATGACAGAAACATGTACAATGGATGGAGCCGTTGATTGGAATGGCCGCCCTGCTATCCGAGGGAGAAGTGGTTCTTGGGTTGCTGCAGTTCTCATATTAGTGAATCAAGGGTTGGCAACATTGGCTTTCTTTGGAGTAGGAGTGAACTTGGTATTGTTCTTGACAAGGGTATTGGGACAAGACAACGCTGAGGCTGCAAACAATGTCAGCAAATGGACCGGAACAGTTTACATTTTCTCTCTTCTTGGGGCTTTCCTTAGTGACTCTTACTGGGGGAGATACAAAACTTGTGCCATCTTTCAAGTCATTTTTGTCATTGGCTTGACATTATTGTCACTAACAACCTACCTATTCCTGCTCAAGCCCAAGGGTTGTGGTGATGAGAAATCTCCATGTGGAGAACATTCGAATTTTGAATTCGCATTGTTTTACCTCTCCATATATCTCATTGCACTAGGGAATGGAGGTTACCAACCTACAATAGCTACATTCGGAGCAGATCAGTTTGATGAGGACGACCCCGAAGAAGGCCACTCCAAGATTGCCTTCTTCAGCTACTTCTACTTGGCTTTGAATCTTGGCTCCCTCTTTTCAAACACAATATTAGGGTATTTTGAGGATAAAGGAATATGGACTGTAGGGTTTTGGGCATCTACAGGCTCTGCGGCCATGGCTTTGATTTTGTTTCTTTGCGGAACTCCGAGGTATAGGCATTTTAAGCCTCAAGGCAATCCTCTTTCTAGGTTCTGTCACGTATTGGTTGCTGCTACAAGAAAATGGAAGGTCAAGATCACGTCAGATGGAGATGATTTGTATGAGGAACATTTGAAACAATGCCCTGAAAATCAGAGTAGGAAAATACTTCACACCCGAGGATTCAAGTTTTTGGATAGAGCAGCAATCATCACATCAAAGGAGTCGAATCATGTAGACAAATATGCTCAAAATCCATGGCGGCTTTGCACAGTGACACAAGTAGAAGAAGTTAAATGCGTATTGAGATTACTTCCAATTTGGCTATGTACAATTCTCTACTCGGTAGTTTTCACACAAATGGCCTCCCTCTTTGTAGAACAAGGTGCCGTAATGAAAACCACCGTGTCCAACTTCCACATTCCCCCAGCCAGCATGTCAAGTTTCGATATCCTCAGCGTCGCATTGTTCATCTTCATTTACCGGAGAGTTCTTGACCCACTTGTTGCTAAGCTACGCAAAAGGGGACTCACCGAGCTACAAAGAATGGGGATTGGTCTTGTCATTGCCATCATGGCTATGATCTCAGCCGGAGTTGTGGAGTGTTTTAGGTTAAAATATGCAAGAACAGATTGCGCCTCTACCGACTGTGAGAGTCCGAGTTCATTGAGCATATTTTGGCAAGTTCCTCAATACATGCTCGTCGGAGCTTCCGAAGTGTTCATGTACGTGGGTCAGCTAGAATTCTTTAATAGTCAAGCACCTGATGGGTTGAAGAGCTTTGGTAGTGCTCTTTGCATGACTTCAATATCACTTGGGAACTATGTGAGTAGTTTGCTGGTTACGATTGTGATGAGGTTTTCTAGTAGAGATGATATGAGTGGATGGATCCCTGGAAACCTTAACAGAGGTCATCTGGACAGGTTTTACTTTCTCTTAGCAGCTTTGACTACAGCTGATCTCATGGTCTATATAGTTTGTGCCAAATGGTACAAGTATATCAAGTTTGAAGCAAAGGGAGGAGATGATCAAAATGAATGTATTAGGCAAGCTGAACTTGGAGTCTGA

Protein Analysis

609

Amino Acids

67.97

Weight (kDa)

7.09

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 56 - 527 1.3e-14 Major Facilitator Superfamily
PTR2 PF00854 116 - 549 3.7e-95 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 397
AccB1I GGYRCC 1 cut(s) 1145
AccI GTMKAC 1 cut(s) 996
AciI CCGC 4 cut(s) 112, 731, 759, 1021
AclWI GGATC 2 cut(s) 1642, 1655
AcoI YGGCCR 2 cut(s) 109, 732
AcsI RAATTY 3 cut(s) 475, 482, 1502
AcuI CTGAAG 1 cut(s) 601
AfaI GTAC 4 cut(s) 82, 1090, 1487, 1751
AfiI CCNNNNNNNGG 2 cut(s) 102, 593
AflIII ACRYGT 1 cut(s) 77
AjiI CACGTC 1 cut(s) 861
AjnI CCWGG 2 cut(s) 21, 1651
AjuI GAANNNNNNNTTGG 6 cut(s) 124, 156, 161, 193, 596, 628
AloI GAACNNNNNNTCC 2 cut(s) 121, 153
Alw21I GWGCWC 1 cut(s) 1552
AlwI GGATC 2 cut(s) 1642, 1655
AlwNI CAGNNNCTG 1 cut(s) 728
Ama87I CYCGRG 1 cut(s) 936
AoxI GGCC 4 cut(s) 109, 595, 732, 1122
ApeKI GCWGC 5 cut(s) 149, 260, 830, 962, 1700
ApoI RAATTY 3 cut(s) 475, 482, 1502
Asp700I GAANNNNTTC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 1397
AspS9I GGNCC 2 cut(s) 25, 282
AsuHPI GGTGA 2 cut(s) 455, 1282
AsuII TTCGAA 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 936
AvaII GGWCC 2 cut(s) 25, 282
BamHI GGATCC 1 cut(s) 1647
BanI GGYRCC 1 cut(s) 1145
Bbv12I GWGCWC 1 cut(s) 1552
BbvCI CCTCAGC 2 cut(s) 255, 1214
BbvI GCAGC 5 cut(s) 136, 247, 817, 974, 1712
BccI CCATC 7 cut(s) 36, 83, 368, 860, 1337, 1520, 1638
BceAI ACGGC 2 cut(s) 80, 1133
BciT130I CCWGG 2 cut(s) 23, 1653
BclI TGATCA 1 cut(s) 1786
BfaI CTAG 4 cut(s) 521, 807, 1499, 1623
BfmI CTRYAG 4 cut(s) 150, 702, 720, 1710
BglI GCCNNNNNGGC 1 cut(s) 1334
BisI GCNGC 8 cut(s) 112, 150, 261, 732, 831, 963, 1022, 1701
BlpI GCTNAGC 1 cut(s) 1269
BlsI GCNGC 8 cut(s) 113, 151, 262, 733, 832, 964, 1023, 1702
Bme1390I CCNGG 2 cut(s) 23, 1653
Bme18I GGWCC 2 cut(s) 25, 282
BmeT110I CYCGRG 1 cut(s) 936
BmgBI CACGTC 1 cut(s) 861
BmgT120I GGNCC 2 cut(s) 25, 282
BmiI GGNNCC 4 cut(s) 94, 649, 1147, 1649
BmrFI CCNGG 2 cut(s) 23, 1653
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 2 cut(s) 15, 725
BmuI ACTGGG 1 cut(s) 346
Bpu10I CCTNAGC 2 cut(s) 255, 1214
Bpu1102I GCTNAGC 1 cut(s) 1269
Bpu14I TTCGAA 1 cut(s) 473
BpuEI CTTGAG 2 cut(s) 410, 774
BsaAI YACGTR 2 cut(s) 820, 1489
BsaJI CCNNGG 7 cut(s) 124, 432, 735, 767, 937, 1016, 1651
BsaWI WCCGGW 2 cut(s) 284, 1242
BsaXI ACNNNNNCTCC 4 cut(s) 121, 151, 192, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 593
Bse1I ACTGG 1 cut(s) 341
Bse3DI GCAATG 2 cut(s) 513, 1323
BseBI CCWGG 2 cut(s) 23, 1653
BseDI CCNNGG 7 cut(s) 124, 432, 735, 767, 937, 1016, 1651
BseGI GGATG 2 cut(s) 94, 1649
BseLI CCNNNNNNNGG 2 cut(s) 102, 593
BseMI GCAATG 2 cut(s) 513, 1323
BseMII CTCAG 3 cut(s) 246, 1228, 1359
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 1794
BseXI GCAGC 5 cut(s) 136, 247, 817, 974, 1712
BseYI CCCAGC 1 cut(s) 1186
BshFI GGCC 4 cut(s) 111, 597, 734, 1124
BshNI GGYRCC 1 cut(s) 1145
BsiHKAI GWGCWC 1 cut(s) 1552
BsiHKCI CYCGRG 1 cut(s) 936
BsiSI CCGG 3 cut(s) 285, 1243, 1350
BslFI GGGAC 2 cut(s) 255, 1299
BslI CCNNNNNNNGG 2 cut(s) 102, 593
BsmFI GGGAC 2 cut(s) 255, 1299
BsnI GGCC 4 cut(s) 111, 597, 734, 1124
BsoBI CYCGRG 1 cut(s) 936
Bsp119I TTCGAA 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 1552
Bsp1407I TGTACA 2 cut(s) 80, 1088
Bsp143I GATC 6 cut(s) 565, 855, 1341, 1647, 1717, 1786
Bsp1720I GCTNAGC 1 cut(s) 1269
Bsp19I CCATGG 2 cut(s) 735, 1016
BspACI CCGC 4 cut(s) 112, 731, 759, 1021
BspANI GGCC 4 cut(s) 111, 597, 734, 1124
BspCNI CTCAG 3 cut(s) 247, 1227, 1358
BspLI GGNNCC 4 cut(s) 94, 649, 1147, 1649
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 2 cut(s) 1642, 1655
BspQI GCTCTTC 1 cut(s) 1529
BspT104I TTCGAA 1 cut(s) 473
BspT107I GGYRCC 1 cut(s) 1145
BsrDI GCAATG 2 cut(s) 513, 1323
BsrGI TGTACA 2 cut(s) 80, 1088
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 7 cut(s) 124, 432, 735, 767, 937, 1016, 1651
BssMI GATC 6 cut(s) 565, 855, 1341, 1647, 1717, 1786
BssT1I CCWWGG 3 cut(s) 432, 735, 1016
Bst2UI CCWGG 2 cut(s) 23, 1653
Bst4CI ACNGT 6 cut(s) 17, 292, 703, 1033, 1165, 1409
Bst6I CTCTTC 2 cut(s) 312, 1529
BstAUI TGTACA 2 cut(s) 80, 1088
BstBAI YACGTR 2 cut(s) 820, 1489
BstBI TTCGAA 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 1192, 1809
BstDEI CTNAG 6 cut(s) 255, 323, 1214, 1269, 1345, 1696
BstDSI CCRYGG 2 cut(s) 735, 1016
BstEII GGTNACC 1 cut(s) 533
BstF5I GGATG 2 cut(s) 94, 1649
BstHHI GCGC 1 cut(s) 1397
BstKTI GATC 6 cut(s) 568, 858, 1344, 1650, 1720, 1789
BstMBI GATC 6 cut(s) 565, 855, 1341, 1647, 1717, 1786
BstMWI GCNNNNNNNGC 5 cut(s) 188, 260, 737, 784, 1334
BstNI CCWGG 2 cut(s) 23, 1653
BstNSI RCATGY 3 cut(s) 81, 1198, 1459
BstPI GGTNACC 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 21, 1651
BstSFI CTRYAG 4 cut(s) 150, 702, 720, 1710
BstV1I GCAGC 5 cut(s) 136, 247, 817, 974, 1712
BstX2I RGATCY 1 cut(s) 1647
BstYI RGATCY 1 cut(s) 1647
BsuRI GGCC 4 cut(s) 111, 597, 734, 1124
BtgI CCRYGG 2 cut(s) 735, 1016
BtrI CACGTC 1 cut(s) 861
BtsCI GGATG 2 cut(s) 94, 1649
BtsIMutI CAGTG 1 cut(s) 1038
Cac8I GCNNGC 2 cut(s) 1192, 1809
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 1 cut(s) 1397
Cfr13I GGNCC 2 cut(s) 25, 282
CseI GACGC 1 cut(s) 1207
Csp6I GTAC 4 cut(s) 81, 1089, 1486, 1750
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviQI GTAC 4 cut(s) 81, 1089, 1486, 1750
DdeI CTNAG 6 cut(s) 255, 323, 1214, 1269, 1345, 1696
DpnI GATC 6 cut(s) 567, 857, 1343, 1649, 1719, 1788
DpnII GATC 6 cut(s) 565, 855, 1341, 1647, 1717, 1786
DrdI GACNNNNNNGTC 1 cut(s) 397
DseDI GACNNNNNNGTC 1 cut(s) 397
EaeI YGGCCR 2 cut(s) 109, 732
Eam1104I CTCTTC 2 cut(s) 312, 1529
EarI CTCTTC 2 cut(s) 312, 1529
Eco130I CCWWGG 3 cut(s) 432, 735, 1016
Eco32I GATATC 1 cut(s) 1210
Eco47I GGWCC 2 cut(s) 25, 282
Eco57I CTGAAG 1 cut(s) 601
Eco88I CYCGRG 1 cut(s) 936
Eco91I GGTNACC 1 cut(s) 533
EcoO65I GGTNACC 1 cut(s) 533
EcoRI GAATTC 2 cut(s) 482, 1502
EcoRII CCWGG 2 cut(s) 21, 1651
EcoRV GATATC 1 cut(s) 1210
EcoT14I CCWWGG 3 cut(s) 432, 735, 1016
ErhI CCWWGG 3 cut(s) 432, 735, 1016
FalI AAGNNNNNCTT 5 cut(s) 124, 156, 596, 628, 1800
FaqI GGGAC 2 cut(s) 255, 1299
FbaI TGATCA 1 cut(s) 1786
FblI GTMKAC 1 cut(s) 996
Fnu4HI GCNGC 8 cut(s) 112, 150, 261, 732, 831, 963, 1022, 1701
FokI GGATG 2 cut(s) 101, 1656
Fsp4HI GCNGC 8 cut(s) 112, 150, 261, 732, 831, 963, 1022, 1701
FspBI CTAG 4 cut(s) 521, 807, 1499, 1623
GlaI GCGC 1 cut(s) 1396
GluI GCNGC 8 cut(s) 112, 150, 261, 732, 831, 963, 1022, 1701
GsaI CCCAGC 1 cut(s) 1190
HaeIII GGCC 4 cut(s) 111, 597, 734, 1124
HapII CCGG 3 cut(s) 285, 1243, 1350
HgaI GACGC 1 cut(s) 1207
HhaI GCGC 1 cut(s) 1397
Hin6I GCGC 1 cut(s) 1395
HinP1I GCGC 1 cut(s) 1395
HinfI GANTC 9 cut(s) 169, 329, 640, 942, 983, 988, 1287, 1414, 1821
HpaII CCGG 3 cut(s) 285, 1243, 1350
HphI GGTGA 2 cut(s) 455, 1282
Hpy166II GTNNAC 3 cut(s) 211, 295, 997
Hpy188I TCNGA 9 cut(s) 125, 560, 768, 865, 915, 1419, 1466, 1474, 1826
Hpy188III TCNNGA 4 cut(s) 226, 853, 1253, 1676
Hpy8I GTNNAC 3 cut(s) 211, 295, 997
Hpy99I CGWCG 2 cut(s) 1223, 1466
HpyAV CCTTC 3 cut(s) 587, 622, 841
HpyCH4III ACNGT 6 cut(s) 17, 292, 703, 1033, 1165, 1409
HpyCH4IV ACGT 3 cut(s) 819, 860, 1488
HpyCH4V TGCA 6 cut(s) 152, 263, 518, 1029, 1382, 1557
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 260, 737, 784, 1334
HpyF3I CTNAG 6 cut(s) 255, 323, 1214, 1269, 1345, 1696
HpySE526I ACGT 3 cut(s) 819, 860, 1488
HspAI GCGC 1 cut(s) 1395
Ksp22I TGATCA 1 cut(s) 1786
Kzo9I GATC 6 cut(s) 565, 855, 1341, 1647, 1717, 1786
LguI GCTCTTC 1 cut(s) 1529
LmnI GCTCC 4 cut(s) 92, 560, 653, 1466
Lsp1109I GCAGC 5 cut(s) 136, 247, 817, 974, 1712
LweI GCATC 2 cut(s) 15, 725
MaeI CTAG 4 cut(s) 521, 807, 1499, 1623
MaeII ACGT 3 cut(s) 819, 860, 1488
MaeIII GTNAC 6 cut(s) 326, 399, 533, 815, 1033, 1600
MalI GATC 6 cut(s) 567, 857, 1343, 1649, 1719, 1788
MboI GATC 6 cut(s) 565, 855, 1341, 1647, 1717, 1786
MboII GAAGA 9 cut(s) 56, 59, 76, 299, 602, 607, 1058, 1225, 1546
MflI RGATCY 1 cut(s) 1647
MhlI GDGCHC 1 cut(s) 1552
MluCI AATT 5 cut(s) 475, 482, 1077, 1092, 1502
MlyI GAGTC 4 cut(s) 323, 992, 1281, 1423
MmeI TCCRAC 2 cut(s) 1194, 1444
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 6 cut(s) 11, 783, 1053, 1373, 1509, 1662
MslI CAYNNNNRTG 4 cut(s) 164, 1118, 1337, 1487
MspA1I CMGCKG 1 cut(s) 1715
MspI CCGG 3 cut(s) 285, 1243, 1350
MspR9I CCNGG 2 cut(s) 23, 1653
MvaI CCWGG 2 cut(s) 23, 1653
MwoI GCNNNNNNNGC 5 cut(s) 188, 260, 737, 784, 1334
NcoI CCATGG 2 cut(s) 735, 1016
NdeII GATC 6 cut(s) 565, 855, 1341, 1647, 1717, 1786
NlaIV GGNNCC 4 cut(s) 94, 649, 1147, 1649
NmuCI GTSAC 4 cut(s) 326, 399, 815, 1033
NspI RCATGY 3 cut(s) 81, 1198, 1459
NspV TTCGAA 1 cut(s) 473
PciI ACATGT 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 1529
PcsI WCGNNNNNNNCGW 1 cut(s) 1470
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 4 cut(s) 169, 640, 942, 988
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 8 cut(s) 113, 151, 262, 733, 832, 964, 1023, 1702
PleI GAGTC 4 cut(s) 323, 991, 1281, 1422
PpsI GAGTC 4 cut(s) 323, 991, 1281, 1422
Ppu21I YACGTR 2 cut(s) 820, 1489
PscI ACATGT 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 21, 1651
PspEI GGTNACC 1 cut(s) 533
PspFI CCCAGC 1 cut(s) 1186
PspGI CCWGG 2 cut(s) 21, 1651
PspN4I GGNNCC 4 cut(s) 94, 649, 1147, 1649
PspPI GGNCC 2 cut(s) 25, 282
PstI CTGCAG 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 1 cut(s) 1647
PvuII CAGCTG 1 cut(s) 1715
RsaI GTAC 4 cut(s) 82, 1090, 1487, 1751
RsaNI GTAC 4 cut(s) 81, 1089, 1486, 1750
RseI CAYNNNNRTG 4 cut(s) 164, 1118, 1337, 1487
SapI GCTCTTC 1 cut(s) 1529
SaqAI TTAA 6 cut(s) 11, 783, 1053, 1373, 1509, 1662
SatI GCNGC 8 cut(s) 112, 150, 261, 732, 831, 963, 1022, 1701
Sau3AI GATC 6 cut(s) 565, 855, 1341, 1647, 1717, 1786
Sau96I GGNCC 2 cut(s) 25, 282
SchI GAGTC 4 cut(s) 323, 992, 1281, 1423
ScrFI CCNGG 2 cut(s) 23, 1653
SduI GDGCHC 1 cut(s) 1552
SfaNI GCATC 2 cut(s) 15, 725
SfcI CTRYAG 4 cut(s) 150, 702, 720, 1710
SfuI TTCGAA 1 cut(s) 473
SinI GGWCC 2 cut(s) 25, 282
SmiMI CAYNNNNRTG 4 cut(s) 164, 1118, 1337, 1487
SmlI CTYRAG 2 cut(s) 425, 789
SmoI CTYRAG 2 cut(s) 425, 789
Sse9I AATT 5 cut(s) 475, 482, 1077, 1092, 1502
SsiI CCGC 4 cut(s) 112, 731, 759, 1021
SspI AATATT 1 cut(s) 669
SspMI CTAG 4 cut(s) 521, 807, 1499, 1623
StyD4I CCNGG 2 cut(s) 21, 1651
StyI CCWWGG 3 cut(s) 432, 735, 1016
TaaI ACNGT 6 cut(s) 17, 292, 703, 1033, 1165, 1409
TaiI ACGT 3 cut(s) 822, 863, 1491
TaqI TCGA 3 cut(s) 473, 986, 1206
TasI AATT 5 cut(s) 475, 482, 1077, 1092, 1502
TatI WGTACW 2 cut(s) 80, 1088
TauI GCSGC 3 cut(s) 114, 734, 1024
TfiI GAWTC 4 cut(s) 169, 640, 942, 988
Tru1I TTAA 6 cut(s) 11, 783, 1053, 1373, 1509, 1662
Tru9I TTAA 6 cut(s) 11, 783, 1053, 1373, 1509, 1662
TscAI CASTG 1 cut(s) 1038
TseFI GTSAC 4 cut(s) 326, 399, 815, 1033
TseI GCWGC 5 cut(s) 149, 260, 830, 962, 1700
Tsp45I GTSAC 4 cut(s) 326, 399, 815, 1033
TspDTI ATGAA 6 cut(s) 1169, 1219, 1225, 1413, 1471, 1809
TspRI CASTG 1 cut(s) 1038
VpaK11BI GGWCC 2 cut(s) 25, 282
XapI RAATTY 3 cut(s) 475, 482, 1502
XceI RCATGY 3 cut(s) 81, 1198, 1459
XmiI GTMKAC 1 cut(s) 996
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 4 cut(s) 521, 807, 1499, 1623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.