Rroxscaffold_4G00312110

POT family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
34857435 .. 34860800
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00312110.1

Sequence Viewer

Length: 1476 bp
ATGTTCCTCATTCGACAACGAATGACAATACCCGGCTTGACATTATTGTCACTAACAACCTACCTATTCCTGCTCAAGCCTAAAGGTTGCGGTGACGAGAAATCTCCATGTGGAGACCATTCGAATTTTGAATTCGGCTTGTTTTACATCTCCATATATCTCATTGCACTAGGGAATGGAGGCTACCAACCTACCGTAGCTACATTTGGAGCGGACCAGTTTGATGAGTACGACCCCAAAGAAGGCCACTCGAAAATTGCCTTCTTCAGCTATTTCTACTTGGCTTTGAATCTTGGCTCCCTCTTTTCTAACACAGGATTAGGGTATTTTGAGGATAAAGGAGTATGGACTGTAGGGTTTTGGGCATCTACAGGCTCTGCTGGCATGGCATTGATTTTGTTTCTTTGCGGAACTCCAAGGTATAGGCATTTTAAGCCTCAGGGAAATCCTCTTTCTAGGTTATGTCACGTACTGGTTGCTGCAACAAGAAAATGGAAGGTCAAGATCACGTCAGATGGACATGATTTGTATGAGGAACACGGGAAAAAATGCTCTGAAAATCAGAGTAGGAAAATACTTCACACCCAAGGAATCAAGTTCTTGGATAGGGCAGCAATCGTCACATCAGAGAAGTTCAACCAAATAGACGGATGTGCTCCAAATCCATGGCGGCTTTGCACAGTGACACAAGTAGAAGAAGTTAAATGCGTACTGAGATTACTTCCAATTTGGCTATGTACAATACTATACTCGGTAGTTTTCACACAAATGGCCTCCCTCTTTGTAGAACAAGGTGCCGTAATGAAAACCACCATCTCCAAGTTCCACATTCCCCCAGCTGGTATGTCAAGTTTCGACATCCTCAGTGTGGCAACTTTTATCTTCATTTACCGGCGAGTTCTCGACCCACTCGTTATCAGGTTACGAAAAAAAGGTCTCACCGAGCTTCAAAGAATGGGGATTGGTCTTGTCATTGCCATCATGGCTATGCTCTCAGCAGGAGTTGTGGAGTGTTTTAGGTTAAAATATGCAAGAACAAATTGCGTCACTACCGATTGTGAGAGTCGAAGTTCATTGAGCATATTTTGGCAAGTTCCTCAATATGTGCTTGTCGGAGCTTCCGAAGTGTTCATGTACGTGGGTCAGCTAGAATTCTTCAACAGTCAAGCACCTGATGGGTTAAAGAGCTTCGGTAGTGCACTTTGCATGACTTCAATATCACTTGGAAACTATGTGAGTAGTTTGCTGGTTACGATAGTGATGAAGTTTTCTAGTAGGGATAATATATTTGGATGGATCCCTGGAAACCTTAACAAAGGTCATCTGGATAGGTTTTACTTTCTCTTAGCAGCTTTGACTACAGCTGATCTCATGGTCTATGTAGTTTGTGCCAAGTGGTACAAGTATATCAAGTTTGAAGCAAAGGGAAGAGATGATCACAATGAAAATATTAGGCAAGCTGAACTTGGAGTCTGA

Protein Analysis

491

Amino Acids

55.14

Weight (kDa)

8.92

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 5 - 410 1.8e-08 Major Facilitator Superfamily
PTR2 PF00854 34 - 433 3e-89 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 794
AccBSI CCGCTC 1 cut(s) 212
AciI CCGC 4 cut(s) 90, 212, 408, 670
AclWI GGATC 2 cut(s) 1291, 1304
AcsI RAATTY 3 cut(s) 124, 131, 1151
AcuI CTGAAG 1 cut(s) 250
AfaI GTAC 6 cut(s) 230, 471, 711, 739, 1136, 1400
AfiI CCNNNNNNNGG 3 cut(s) 242, 839, 868
AgsI TTSAA 7 cut(s) 131, 289, 637, 950, 1159, 1215, 1418
AjiI CACGTC 1 cut(s) 510
AjnI CCWGG 1 cut(s) 1300
Alw21I GWGCWC 2 cut(s) 658, 1201
Alw26I GTCTC 2 cut(s) 108, 941
Alw44I GTGCAC 1 cut(s) 1197
AlwI GGATC 2 cut(s) 1291, 1304
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 2 cut(s) 244, 771
ApaLI GTGCAC 1 cut(s) 1197
ApeKI GCWGC 3 cut(s) 479, 611, 1349
ApoI RAATTY 3 cut(s) 124, 131, 1151
ArsI GACNNNNNNTTYG 2 cut(s) 919, 951
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 104, 931
AsuII TTCGAA 1 cut(s) 122
AvaII GGWCC 1 cut(s) 214
AxyI CCTNAGG 1 cut(s) 438
BaeGI GKGCMC 1 cut(s) 1201
BamHI GGATCC 1 cut(s) 1296
BanI GGYRCC 1 cut(s) 794
Bbv12I GWGCWC 2 cut(s) 658, 1201
BbvI GCAGC 3 cut(s) 466, 623, 1361
BccI CCATC 5 cut(s) 509, 821, 986, 1169, 1287
BceAI ACGGC 1 cut(s) 782
BciT130I CCWGG 1 cut(s) 1302
BclI TGATCA 1 cut(s) 1435
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 108, 941
BfaI CTAG 4 cut(s) 170, 456, 1148, 1272
BfmI CTRYAG 3 cut(s) 351, 369, 1359
BglI GCCNNNNNGGC 1 cut(s) 983
BisI GCNGC 4 cut(s) 480, 612, 671, 1350
BlsI GCNGC 4 cut(s) 481, 613, 672, 1351
Bme1390I CCNGG 2 cut(s) 33, 1302
Bme18I GGWCC 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 298, 796, 1298
BmrFI CCNGG 2 cut(s) 33, 1302
BmsI GCATC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 33
BsaAI YACGTR 2 cut(s) 469, 1138
BsaI GGTCTC 2 cut(s) 108, 941
BsaJI CCNNGG 4 cut(s) 416, 586, 665, 1300
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 839, 868
Bse118I RCCGGY 1 cut(s) 891
Bse1I ACTGG 2 cut(s) 217, 477
Bse21I CCTNAGG 1 cut(s) 438
Bse3DI GCAATG 2 cut(s) 162, 972
BseBI CCWGG 1 cut(s) 1302
BseDI CCNNGG 4 cut(s) 416, 586, 665, 1300
BseGI GGATG 3 cut(s) 656, 858, 1298
BseLI CCNNNNNNNGG 3 cut(s) 242, 839, 868
BseMI GCAATG 2 cut(s) 162, 972
BseMII CTCAG 4 cut(s) 452, 704, 877, 1008
BseNI ACTGG 2 cut(s) 217, 477
BseSI GKGCMC 1 cut(s) 1201
BseXI GCAGC 3 cut(s) 466, 623, 1361
BseYI CCCAGC 1 cut(s) 835
BshFI GGCC 2 cut(s) 246, 773
BshNI GGYRCC 1 cut(s) 794
BsiHKAI GWGCWC 2 cut(s) 658, 1201
BsiSI CCGG 2 cut(s) 33, 892
BslI CCNNNNNNNGG 3 cut(s) 242, 839, 868
BsmAI GTCTC 2 cut(s) 108, 941
BsnI GGCC 2 cut(s) 246, 773
Bso31I GGTCTC 2 cut(s) 108, 941
Bsp119I TTCGAA 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 658, 1201
Bsp1407I TGTACA 1 cut(s) 737
Bsp143I GATC 4 cut(s) 504, 1296, 1366, 1435
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 4 cut(s) 90, 212, 408, 670
BspANI GGCC 2 cut(s) 246, 773
BspCNI CTCAG 4 cut(s) 451, 705, 876, 1007
BspLI GGNNCC 3 cut(s) 298, 796, 1298
BspPI GGATC 2 cut(s) 1291, 1304
BspT104I TTCGAA 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 794
BspTNI GGTCTC 2 cut(s) 108, 941
BsrBI CCGCTC 1 cut(s) 212
BsrDI GCAATG 2 cut(s) 162, 972
BsrFI RCCGGY 1 cut(s) 891
BsrGI TGTACA 1 cut(s) 737
BsrI ACTGG 2 cut(s) 217, 477
BssAI RCCGGY 1 cut(s) 891
BssECI CCNNGG 4 cut(s) 416, 586, 665, 1300
BssMI GATC 4 cut(s) 504, 1296, 1366, 1435
BssT1I CCWWGG 3 cut(s) 416, 586, 665
Bst2UI CCWGG 1 cut(s) 1302
Bst4CI ACNGT 4 cut(s) 196, 352, 682, 1163
Bst6I CTCTTC 1 cut(s) 1423
BstAUI TGTACA 1 cut(s) 737
BstBAI YACGTR 2 cut(s) 469, 1138
BstBI TTCGAA 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 382, 1458
BstDEI CTNAG 5 cut(s) 438, 713, 863, 994, 1345
BstDSI CCRYGG 1 cut(s) 665
BstF5I GGATG 3 cut(s) 656, 858, 1298
BstKTI GATC 4 cut(s) 507, 1299, 1369, 1438
BstMAI GTCTC 2 cut(s) 108, 941
BstMBI GATC 4 cut(s) 504, 1296, 1366, 1435
BstMWI GCNNNNNNNGC 4 cut(s) 381, 386, 433, 983
BstNI CCWGG 1 cut(s) 1302
BstSCI CCNGG 2 cut(s) 31, 1300
BstSFI CTRYAG 3 cut(s) 351, 369, 1359
BstSLI GKGCMC 1 cut(s) 1201
BstV1I GCAGC 3 cut(s) 466, 623, 1361
BstX2I RGATCY 1 cut(s) 1296
BstXI CCANNNNNNTGG 1 cut(s) 666
BstYI RGATCY 1 cut(s) 1296
Bsu36I CCTNAGG 1 cut(s) 438
BsuRI GGCC 2 cut(s) 246, 773
BtgI CCRYGG 1 cut(s) 665
BtrI CACGTC 1 cut(s) 510
BtsCI GGATG 3 cut(s) 656, 858, 1298
BtsIMutI CAGTG 2 cut(s) 687, 871
Cac8I GCNNGC 2 cut(s) 382, 1458
CaiI CAGNNNCTG 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 891
Cfr13I GGNCC 1 cut(s) 214
CseI GACGC 1 cut(s) 1033
Csp6I GTAC 6 cut(s) 229, 470, 710, 738, 1135, 1399
CviAII CATG 8 cut(s) 108, 385, 521, 666, 982, 1132, 1207, 1372
CviQI GTAC 6 cut(s) 229, 470, 710, 738, 1135, 1399
DdeI CTNAG 5 cut(s) 438, 713, 863, 994, 1345
DpnI GATC 4 cut(s) 506, 1298, 1368, 1437
DpnII GATC 4 cut(s) 504, 1296, 1366, 1435
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 1423
EarI CTCTTC 1 cut(s) 1423
Eco130I CCWWGG 3 cut(s) 416, 586, 665
Eco31I GGTCTC 2 cut(s) 108, 941
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 250
Eco81I CCTNAGG 1 cut(s) 438
EcoRI GAATTC 2 cut(s) 131, 1151
EcoRII CCWGG 1 cut(s) 1300
EcoT14I CCWWGG 3 cut(s) 416, 586, 665
ErhI CCWWGG 3 cut(s) 416, 586, 665
FaeI CATG 8 cut(s) 111, 388, 524, 669, 985, 1135, 1210, 1375
FalI AAGNNNNNCTT 1 cut(s) 1449
FatI CATG 8 cut(s) 107, 384, 520, 665, 981, 1131, 1206, 1371
FbaI TGATCA 1 cut(s) 1435
Fnu4HI GCNGC 4 cut(s) 480, 612, 671, 1350
FokI GGATG 3 cut(s) 663, 845, 1305
Fsp4HI GCNGC 4 cut(s) 480, 612, 671, 1350
FspBI CTAG 4 cut(s) 170, 456, 1148, 1272
GluI GCNGC 4 cut(s) 480, 612, 671, 1350
GsaI CCCAGC 1 cut(s) 839
HaeIII GGCC 2 cut(s) 246, 773
HapII CCGG 2 cut(s) 33, 892
HgaI GACGC 1 cut(s) 1033
Hin1II CATG 8 cut(s) 111, 388, 524, 669, 985, 1135, 1210, 1375
HinfI GANTC 4 cut(s) 289, 591, 1063, 1470
HpaII CCGG 2 cut(s) 33, 892
HphI GGTGA 2 cut(s) 104, 931
Hpy166II GTNNAC 1 cut(s) 1199
Hpy188I TCNGA 7 cut(s) 514, 556, 564, 628, 1115, 1123, 1475
Hpy188III TCNNGA 3 cut(s) 502, 902, 1325
Hpy8I GTNNAC 1 cut(s) 1199
HpyAV CCTTC 3 cut(s) 236, 271, 490
HpyCH4III ACNGT 4 cut(s) 196, 352, 682, 1163
HpyCH4IV ACGT 3 cut(s) 468, 509, 1137
HpyCH4V TGCA 6 cut(s) 167, 482, 678, 1031, 1199, 1206
HpyF10VI GCNNNNNNNGC 4 cut(s) 381, 386, 433, 983
HpyF3I CTNAG 5 cut(s) 438, 713, 863, 994, 1345
HpySE526I ACGT 3 cut(s) 468, 509, 1137
Hsp92II CATG 8 cut(s) 111, 388, 524, 669, 985, 1135, 1210, 1375
Ksp22I TGATCA 1 cut(s) 1435
Kzo9I GATC 4 cut(s) 504, 1296, 1366, 1435
LmnI GCTCC 4 cut(s) 209, 302, 661, 1115
Lsp1109I GCAGC 3 cut(s) 466, 623, 1361
LweI GCATC 1 cut(s) 374
MaeI CTAG 4 cut(s) 170, 456, 1148, 1272
MaeII ACGT 3 cut(s) 468, 509, 1137
MaeIII GTNAC 8 cut(s) 48, 92, 464, 619, 682, 921, 1045, 1249
MalI GATC 4 cut(s) 506, 1298, 1368, 1437
MbiI CCGCTC 1 cut(s) 212
MboI GATC 4 cut(s) 504, 1296, 1366, 1435
MboII GAAGA 5 cut(s) 256, 707, 874, 1147, 1440
MflI RGATCY 1 cut(s) 1296
MhlI GDGCHC 2 cut(s) 658, 1201
MluCI AATT 6 cut(s) 124, 131, 255, 726, 1039, 1151
MlyI GAGTC 1 cut(s) 1072
MmeI TCCRAC 1 cut(s) 1093
MseI TTAA 5 cut(s) 432, 702, 1022, 1181, 1311
MslI CAYNNNNRTG 3 cut(s) 767, 986, 1136
MspA1I CMGCKG 2 cut(s) 839, 1364
MspI CCGG 2 cut(s) 33, 892
MspR9I CCNGG 2 cut(s) 33, 1302
MvaI CCWGG 1 cut(s) 1302
MwoI GCNNNNNNNGC 4 cut(s) 381, 386, 433, 983
NciI CCSGG 1 cut(s) 33
NcoI CCATGG 1 cut(s) 665
NdeII GATC 4 cut(s) 504, 1296, 1366, 1435
NlaIII CATG 8 cut(s) 111, 388, 524, 669, 985, 1135, 1210, 1375
NlaIV GGNNCC 3 cut(s) 298, 796, 1298
NmuCI GTSAC 6 cut(s) 48, 92, 464, 619, 682, 1045
NspV TTCGAA 1 cut(s) 122
PcsI WCGNNNNNNNCGW 2 cut(s) 909, 1119
PfeI GAWTC 2 cut(s) 289, 591
PkrI GCNGC 4 cut(s) 481, 613, 672, 1351
PleI GAGTC 1 cut(s) 1071
PpsI GAGTC 1 cut(s) 1071
Ppu21I YACGTR 2 cut(s) 469, 1138
Psp6I CCWGG 1 cut(s) 1300
PspFI CCCAGC 1 cut(s) 835
PspGI CCWGG 1 cut(s) 1300
PspN4I GGNNCC 3 cut(s) 298, 796, 1298
PspPI GGNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 1 cut(s) 1296
PvuII CAGCTG 2 cut(s) 839, 1364
RsaI GTAC 6 cut(s) 230, 471, 711, 739, 1136, 1400
RsaNI GTAC 6 cut(s) 229, 470, 710, 738, 1135, 1399
RseI CAYNNNNRTG 3 cut(s) 767, 986, 1136
SaqAI TTAA 5 cut(s) 432, 702, 1022, 1181, 1311
SatI GCNGC 4 cut(s) 480, 612, 671, 1350
Sau3AI GATC 4 cut(s) 504, 1296, 1366, 1435
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 1072
ScrFI CCNGG 2 cut(s) 33, 1302
SduI GDGCHC 2 cut(s) 658, 1201
SfaNI GCATC 1 cut(s) 374
SfcI CTRYAG 3 cut(s) 351, 369, 1359
SfuI TTCGAA 1 cut(s) 122
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 3 cut(s) 767, 986, 1136
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 6 cut(s) 124, 131, 255, 726, 1039, 1151
SsiI CCGC 4 cut(s) 90, 212, 408, 670
SspI AATATT 1 cut(s) 1450
SspMI CTAG 4 cut(s) 170, 456, 1148, 1272
StyD4I CCNGG 2 cut(s) 31, 1300
StyI CCWWGG 3 cut(s) 416, 586, 665
TaaI ACNGT 4 cut(s) 196, 352, 682, 1163
TaiI ACGT 3 cut(s) 471, 512, 1140
TaqI TCGA 6 cut(s) 13, 122, 251, 855, 903, 1066
TasI AATT 6 cut(s) 124, 131, 255, 726, 1039, 1151
TatI WGTACW 1 cut(s) 737
TauI GCSGC 1 cut(s) 673
TfiI GAWTC 2 cut(s) 289, 591
Tru1I TTAA 5 cut(s) 432, 702, 1022, 1181, 1311
Tru9I TTAA 5 cut(s) 432, 702, 1022, 1181, 1311
TscAI CASTG 2 cut(s) 687, 871
TseFI GTSAC 6 cut(s) 48, 92, 464, 619, 682, 1045
TseI GCWGC 3 cut(s) 479, 611, 1349
Tsp45I GTSAC 6 cut(s) 48, 92, 464, 619, 682, 1045
TspDTI ATGAA 6 cut(s) 818, 874, 1062, 1120, 1277, 1458
TspGWI ACGGA 1 cut(s) 663
TspRI CASTG 2 cut(s) 687, 871
VneI GTGCAC 1 cut(s) 1197
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 3 cut(s) 124, 131, 1151
XspI CTAG 4 cut(s) 170, 456, 1148, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.