Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006027.1

Orthogroup ID

OG0002904

Physical Location & Seq

Genomic Coordinates Forward (+)

41020 .. 41445

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006027.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgttattcaacaggttcttggatagggcagcaatcgtcacatcagaggagttgaaacaaatagacagatgttctccaaatccatggctgctttgcacagtgacacaagtagaagaagttaaatgtgtactgagattacttccaatttggctatgtacaatactatactcagttgttttcacacaaatggcctccctttttgtagaacaaggtgctgtaatgaaaaccaccatctccaagttccacattcccccagcgagcatgtcaagtttcgacatccttagcgtggcaacttttatcttcatttaccggcgagttctcgacccactggttgctagggtgcggaaaaaaggactcaccgagcttcaaagaatggggattggtcttaccagcgacgaggttgcaacgctgcccggaaagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010038 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046686 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

141

Amino Acids

15.94

Weight (kDa)

9.04

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21680
fragaria_vesca	FvH4_7g07900
malus_domestica	MD02G1228800.v1.1 MD07G1082700.v1.1
prunus_persica	Prupe.2G110400_v2.0.a1
pyrus_communis	pycom02g19760 pycom07g06610
rosa_chinensis	RchiOBHm_Chr1g0324671 RchiOBHm_Chr1g0341461 RchiOBHm_Chr1g0341491 RchiOBHm_Chr1g0341501
rosa_laevigata	RLG00000029091 RLG00000029095 RLG00000029096 RLG00000029100
rosa_multiflora	Rmu_sc0003672.1_g000005 Rmu_sc0004903.1_g000009 Rmu_sc0006027.1_g000013 Rmu_sc0014111.1_g000001 Rmu_ssc0000295.1_g000062
rosa_roxburghii	Rroxscaffold_4G00312080 Rroxscaffold_4G00312110 Rroxscaffold_4G00312170
rosa_rugosa	Rorug01G0156400.1 Rorug01G0156500.1
rosa_samantha	Rh1AG171000 Rh1BG139000 Rh1BG139200 Rh1BG139300 Rh1BG139400 Rh1CG159300 Rh1CG159500 Rh1DG171500 Rh1DG171600 Rh1DG171800
rosa_wichuraiana	Rw1G014260 Rw1G014280 Rw1G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	343
AfaI	GTAC	2 cut(s)	129, 157
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	3 cut(s)	10, 55, 368
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	3 cut(s)	29, 88, 409
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	41, 75, 396
BccI	CCATC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BcnI	CCSGG	1 cut(s)	414
BfaI	CTAG	1 cut(s)	336
BisI	GCNGC	3 cut(s)	30, 89, 410
BlsI	GCNGC	3 cut(s)	31, 90, 411
Bme1390I	CCNGG	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	122, 183
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	41, 75, 396
BseYI	CCCAGC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	310, 414
BslI	CCNNNNNNNGG	1 cut(s)	286
BsnI	GGCC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	155
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	123, 182
BsrFI	RCCGGY	1 cut(s)	309
BsrGI	TGTACA	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	100
BstAUI	TGTACA	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	3 cut(s)	131, 169, 281
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	412
BstV1I	GCAGC	3 cut(s)	41, 75, 396
BstXI	CCANNNNNNTGG	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	105, 326
Cac8I	GCNNGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	128, 156
CviAII	CATG	2 cut(s)	84, 262
CviJI	RGCY	4 cut(s)	88, 151, 191, 364
CviKI_1	RGCY	4 cut(s)	88, 151, 191, 364
CviQI	GTAC	2 cut(s)	128, 156
DdeI	CTNAG	3 cut(s)	131, 169, 281
Eco130I	CCWWGG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	2 cut(s)	87, 265
FaiI	YATR	4 cut(s)	85, 154, 166, 263
FatI	CATG	2 cut(s)	83, 261
Fnu4HI	GCNGC	3 cut(s)	30, 89, 410
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	30, 89, 410
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	3 cut(s)	30, 89, 410
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	2 cut(s)	310, 414
Hin1II	CATG	2 cut(s)	87, 265
HinfI	GANTC	1 cut(s)	354
HpaII	CCGG	2 cut(s)	310, 414
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	398
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	96, 404
HpyF3I	CTNAG	3 cut(s)	131, 169, 281
Hsp92II	CATG	2 cut(s)	87, 265
LpnPI	CCDG	4 cut(s)	267, 314, 323, 403
Lsp1109I	GCAGC	3 cut(s)	41, 75, 396
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	37, 100
MboII	GAAGA	2 cut(s)	125, 292
MluCI	AATT	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	40, 202, 391
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	2 cut(s)	310, 414
MspR9I	CCNGG	1 cut(s)	414
NciI	CCSGG	1 cut(s)	414
NcoI	CCATGG	1 cut(s)	83
NlaIII	CATG	2 cut(s)	87, 265
NmuCI	GTSAC	2 cut(s)	37, 100
NspI	RCATGY	1 cut(s)	265
PkrI	GCNGC	3 cut(s)	31, 90, 411
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	253
RsaI	GTAC	2 cut(s)	129, 157
RsaNI	GTAC	2 cut(s)	128, 156
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	3 cut(s)	30, 89, 410
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	414
SetI	ASST	4 cut(s)	17, 214, 366, 402
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	273, 321
TasI	AATT	1 cut(s)	144
TatI	WGTACW	2 cut(s)	127, 155
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	105, 333
TseFI	GTSAC	2 cut(s)	37, 100
TseI	GCWGC	3 cut(s)	29, 88, 409
Tsp45I	GTSAC	2 cut(s)	37, 100
TspDTI	ATGAA	2 cut(s)	236, 292
TspRI	CASTG	2 cut(s)	105, 333
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.