Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002904

Physical Location & Seq

Genomic Coordinates Reverse (-)

23218932 .. 23221481

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG139400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGACAGAAACTTGTACGATGGATGGAGCCGTTGATTGGAATGGCCGCCCTGCAATCCGAGGGAGAACTGGTTCTTGGGTTGCTGCAATTCTCATATTAGTGAATCAAGGATTGGCAACATTGGCATTCTTTGGAGTAGGAGTGAACTTGGTATTGTTCTTGACAAGGGTACTGGGACAAGACAATGCTGAGGCTGCAAACAATGTCAGCAAATGGACCGGAACAGTTTACATTTTCTCTCTTCTTGGGGCTTTTCTTAGTGATTCGTACTGGGGGAGATACAAAACTTGTGCTATCTTTCAAGTTAATTTTGTCATTGGCTTGACATTATTGTCAGTAACAACCTACCAATTCCTGCTCAAGCCTAAAGGTTGCGGTGATGAGCAATCTCCATGCAGAGACCATTCGAATTTTGAATTCGCATTGTTTTACATCTCCATATATCTTATTGCACTAGGGAATGGAGGCTACCAACCTACCATAGCTACATTTGGAGCGGACCAGTTTGATGAGGAAGACCCCAAAGAAAGTCACTCGAAAATTGCCTTCTTCAGCTATTTCTACTTGGCTTTGAATCTTGGCTCCCTCTTTTCTAACACAATATTAGGGTATTTTGAGGATAAAGGAATATGGACTGTAGGGTTTTGGGCATCTACAGGCTCTGCTGGCATGGCATTGATTTTGTTTCTTTGCGGAACTCCAAGGTATAGGCATTTTAAGCCTCAGGGCAATCCTCTTTCTAGGTTATGTCACGTACTGGTTGCTGCAACAAGAAAATGGAAGGTCAAGATCACGTCAGATGGACATGATTTGTATGAGGAACATGGGAAACAATGCTCTGAAAATCAGAGTAGGAAAATACTTCACACTCGAGGAATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010038 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046686 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

294

Amino Acids

32.67

Weight (kDa)

8.41

Isoelectric Point (pI)

16.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	34 - 245	3.3e-10	Major Facilitator Superfamily
PTR2	PF00854	94 - 268	2.6e-38	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21680
fragaria_vesca	FvH4_7g07900
malus_domestica	MD02G1228800.v1.1 MD07G1082700.v1.1
prunus_persica	Prupe.2G110400_v2.0.a1
pyrus_communis	pycom02g19760 pycom07g06610
rosa_chinensis	RchiOBHm_Chr1g0324671 RchiOBHm_Chr1g0341461 RchiOBHm_Chr1g0341491 RchiOBHm_Chr1g0341501
rosa_laevigata	RLG00000029091 RLG00000029095 RLG00000029096 RLG00000029100
rosa_multiflora	Rmu_sc0003672.1_g000005 Rmu_sc0004903.1_g000009 Rmu_sc0006027.1_g000013 Rmu_sc0014111.1_g000001 Rmu_ssc0000295.1_g000062
rosa_roxburghii	Rroxscaffold_4G00312080 Rroxscaffold_4G00312110 Rroxscaffold_4G00312170
rosa_rugosa	Rorug01G0156400.1 Rorug01G0156500.1
rosa_samantha	Rh1AG171000 Rh1BG139000 Rh1BG139200 Rh1BG139300 Rh1BG139400 Rh1CG159300 Rh1CG159500 Rh1DG171500 Rh1DG171600 Rh1DG171800
rosa_wichuraiana	Rw1G014260 Rw1G014280 Rw1G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	497
AciI	CCGC	4 cut(s)	46, 375, 497, 693
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	409, 416
AcuI	CTGAAG	1 cut(s)	535
AfaI	GTAC	4 cut(s)	16, 171, 269, 756
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	3 cut(s)	302, 416, 574
AjiI	CACGTC	1 cut(s)	795
AjuI	GAANNNNNNNTTGG	4 cut(s)	58, 90, 95, 127
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
AluBI	AGCT	2 cut(s)	485, 555
AluI	AGCT	2 cut(s)	485, 555
Alw26I	GTCTC	1 cut(s)	393
AlwNI	CAGNNNCTG	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	3 cut(s)	83, 194, 764
ApoI	RAATTY	2 cut(s)	409, 416
Asp700I	GAANNNNTTC	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	216, 499
AsuHPI	GGTGA	1 cut(s)	389
AsuII	TTCGAA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	870
AvaII	GGWCC	2 cut(s)	216, 499
AxyI	CCTNAGG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	70, 181, 751
BccI	CCATC	3 cut(s)	13, 17, 794
BceAI	ACGGC	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	2 cut(s)	455, 741
BfmI	CTRYAG	2 cut(s)	636, 654
BisI	GCNGC	4 cut(s)	46, 84, 195, 765
BlsI	GCNGC	4 cut(s)	47, 85, 196, 766
Bme18I	GGWCC	2 cut(s)	216, 499
BmeT110I	CYCGRG	1 cut(s)	870
BmgBI	CACGTC	1 cut(s)	795
BmgT120I	GGNCC	2 cut(s)	216, 499
BmiI	GGNNCC	2 cut(s)	28, 583
BmrI	ACTGGG	2 cut(s)	182, 280
BmsI	GCATC	1 cut(s)	659
BmuI	ACTGGG	2 cut(s)	182, 280
BpiI	GAAGAC	1 cut(s)	522
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	344
BsaAI	YACGTR	1 cut(s)	754
BsaI	GGTCTC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	58, 701
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 126, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	5 cut(s)	73, 177, 275, 502, 762
Bse21I	CCTNAGG	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	58, 701
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	180, 737
BseNI	ACTGG	5 cut(s)	73, 177, 275, 502, 762
BseXI	GCAGC	3 cut(s)	70, 181, 751
BshFI	GGCC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	393
BsoBI	CYCGRG	1 cut(s)	870
Bsp119I	TTCGAA	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	789
BspACI	CCGC	4 cut(s)	46, 375, 497, 693
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	181, 736
BspLI	GGNNCC	2 cut(s)	28, 583
BspT104I	TTCGAA	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	393
BsrBI	CCGCTC	1 cut(s)	497
BsrI	ACTGG	5 cut(s)	73, 177, 275, 502, 762
BssECI	CCNNGG	2 cut(s)	58, 701
BssMI	GATC	1 cut(s)	789
BssT1I	CCWWGG	1 cut(s)	701
Bst4CI	ACNGT	2 cut(s)	226, 637
Bst6I	CTCTTC	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	754
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	3 cut(s)	189, 257, 723
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	792
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	1 cut(s)	789
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 194, 666, 671, 718
BstSFI	CTRYAG	2 cut(s)	636, 654
BstV1I	GCAGC	3 cut(s)	70, 181, 751
BstV2I	GAAGAC	1 cut(s)	522
Bsu36I	CCTNAGG	1 cut(s)	723
BsuRI	GGCC	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	795
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	667
CaiI	CAGNNNCTG	1 cut(s)	662
Cfr13I	GGNCC	2 cut(s)	216, 499
Csp6I	GTAC	4 cut(s)	15, 170, 268, 755
CviAII	CATG	4 cut(s)	393, 670, 806, 824
CviQI	GTAC	4 cut(s)	15, 170, 268, 755
DdeI	CTNAG	3 cut(s)	189, 257, 723
DpnI	GATC	1 cut(s)	791
DpnII	GATC	1 cut(s)	789
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	701
Eco31I	GGTCTC	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	216, 499
Eco57I	CTGAAG	1 cut(s)	535
Eco81I	CCTNAGG	1 cut(s)	723
Eco88I	CYCGRG	1 cut(s)	870
EcoRI	GAATTC	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	701
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	4 cut(s)	396, 673, 809, 827
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	4 cut(s)	392, 669, 805, 823
Fnu4HI	GCNGC	4 cut(s)	46, 84, 195, 765
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	4 cut(s)	46, 84, 195, 765
FspBI	CTAG	2 cut(s)	455, 741
GluI	GCNGC	4 cut(s)	46, 84, 195, 765
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	4 cut(s)	396, 673, 809, 827
HinfI	GANTC	4 cut(s)	103, 263, 574, 876
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	145, 229
Hpy188I	TCNGA	4 cut(s)	59, 799, 841, 849
Hpy188III	TCNNGA	2 cut(s)	160, 787
Hpy8I	GTNNAC	2 cut(s)	145, 229
HpyAV	CCTTC	2 cut(s)	556, 775
HpyCH4III	ACNGT	2 cut(s)	226, 637
HpyCH4IV	ACGT	2 cut(s)	753, 794
HpyCH4V	TGCA	6 cut(s)	53, 86, 197, 396, 452, 767
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 194, 666, 671, 718
HpyF3I	CTNAG	3 cut(s)	189, 257, 723
HpySE526I	ACGT	2 cut(s)	753, 794
Hsp92II	CATG	4 cut(s)	396, 673, 809, 827
Kzo9I	GATC	1 cut(s)	789
LmnI	GCTCC	3 cut(s)	26, 494, 587
Lsp1109I	GCAGC	3 cut(s)	70, 181, 751
LweI	GCATC	1 cut(s)	659
MaeI	CTAG	2 cut(s)	455, 741
MaeII	ACGT	2 cut(s)	753, 794
MaeIII	GTNAC	3 cut(s)	337, 530, 749
MalI	GATC	1 cut(s)	791
MbiI	CCGCTC	1 cut(s)	497
MboI	GATC	1 cut(s)	789
MboII	GAAGA	3 cut(s)	233, 527, 541
MluCI	AATT	6 cut(s)	87, 307, 350, 409, 416, 540
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	2 cut(s)	306, 717
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	125
MwoI	GCNNNNNNNGC	5 cut(s)	122, 194, 666, 671, 718
NdeII	GATC	1 cut(s)	789
NlaIII	CATG	4 cut(s)	396, 673, 809, 827
NlaIV	GGNNCC	2 cut(s)	28, 583
NmuCI	GTSAC	2 cut(s)	530, 749
NspV	TTCGAA	1 cut(s)	407
PaeR7I	CTCGAG	1 cut(s)	870
PctI	GAATGC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	4 cut(s)	103, 263, 574, 876
PkrI	GCNGC	4 cut(s)	47, 85, 196, 766
Ppu21I	YACGTR	1 cut(s)	754
PspN4I	GGNNCC	2 cut(s)	28, 583
PspPI	GGNCC	2 cut(s)	216, 499
PspXI	VCTCGAGB	1 cut(s)	870
PstNI	CAGNNNCTG	1 cut(s)	662
RsaI	GTAC	4 cut(s)	16, 171, 269, 756
RsaNI	GTAC	4 cut(s)	15, 170, 268, 755
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	306, 717
SatI	GCNGC	4 cut(s)	46, 84, 195, 765
Sau3AI	GATC	1 cut(s)	789
Sau96I	GGNCC	2 cut(s)	216, 499
SfaNI	GCATC	1 cut(s)	659
SfcI	CTRYAG	2 cut(s)	636, 654
Sfr274I	CTCGAG	1 cut(s)	870
SfuI	TTCGAA	1 cut(s)	407
SinI	GGWCC	2 cut(s)	216, 499
SlaI	CTCGAG	1 cut(s)	870
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	359, 870
SmoI	CTYRAG	2 cut(s)	359, 870
Sse9I	AATT	6 cut(s)	87, 307, 350, 409, 416, 540
SsiI	CCGC	4 cut(s)	46, 375, 497, 693
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	2 cut(s)	455, 741
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	2 cut(s)	226, 637
TaiI	ACGT	2 cut(s)	756, 797
TaqI	TCGA	3 cut(s)	407, 536, 871
TasI	AATT	6 cut(s)	87, 307, 350, 409, 416, 540
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	4 cut(s)	103, 263, 574, 876
Tru1I	TTAA	2 cut(s)	306, 717
Tru9I	TTAA	2 cut(s)	306, 717
TseFI	GTSAC	2 cut(s)	530, 749
TseI	GCWGC	3 cut(s)	83, 194, 764
Tsp45I	GTSAC	2 cut(s)	530, 749
VpaK11BI	GGWCC	2 cut(s)	216, 499
XapI	RAATTY	2 cut(s)	409, 416
XhoI	CTCGAG	1 cut(s)	870
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	2 cut(s)	455, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.