Rroxscaffold_4G00312170

POT family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
34964015 .. 34967201
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00312170.1

Sequence Viewer

Length: 1602 bp
ATGGCCGGCTTAGATACTTTAAAAGACCCGCAGGGCTATGAAGAAGAAAAAAACCAAACGATGACAGAAACTTGTACAATGGATGGAGCCGTTGATTGGAATGGCCGCCCTGCAATCCGAGGGAGAACTGGTTCTTGGGTTGCTGCAATTCTCATATTAGTGAATCAAGGATTGGCAACATTGGCATTCTTTGGAGTAGGAGTGAACTTGGTATTGTTCTTGACAAGGGTACTGGGACAAGACAACGCTGAGGCTGCAAACAATGTCAGCAAATGGACCGGAACAGTTTACATGTTCTCTCTTCTTGGGGCTTTTCTTAGTGATTCTTACTGGGGGAGATACAAAACTTGTGCTATCTTTCAAGTTATTTTTGTCATTGGCTTGACATTATTGTCACTAACAACGTACCTATTCCTGCTCAAGCCTAAAGGTTGCGGTGATGAGCAATCTCCATGTGAAGACCATTCGAATTTTGAATTCGCAATGTTTTACATCTCCATATATCTCATTGCACTAGGGAATGGCGGCTACCAACCTAACATAGCTACATTTGGAGCGGACCAGTTTGATGAGGACGACCTCAAAGAAGGTCACTCGAAAATTGCCTTCTTCAGCTATTTCTACTTGGCTTTGAATCTTGGCTCCCTCTTCTCTAACACAATATTAGGCTATTTTGAGGATAAAGGACTATGGACTGTAGGGTTTTGGGCATCTACAGGCTCTGCTGGCATGGCATTGATTTTGTTTCTTTGCGGAACTCCAAGGTATAGGCATTTTAAGCCTCAGGGCAATCCGCTTTCTAGGTTATGTCACGTACTGGTTGCTGCAACAAGAAAATGGAAGGTTAAGATCACGTCAGATGGAGATGACCATTTGTATGAGGAACATGGGAAACAATGCTCTGAAAATCAGAAACAAGGTGCTGTAATGAAAACCACCATCTCCAAGTTCCACATTCCCCCAGCGAGCATGTCAAGTTTCGACATCCTCAGCGTGGCAATTTTTATCTTCATTTACCGGCGAGTTCTCGACCCACTTGTTGCCAGGGTACGGAAAAAAGGACTCACCGAGCTTCAAAGAATGGGGATTGGTCTTGTCATTGCCATCATGGCTATGATCTCAGCAGGAGTTGTGGAGTGTTTTAGGTTAAAATATGCAAGAACAAATTGCGCCGCTACCGATTGTGAGATTTCAAGTTCGTTGAGCATATTTTGGCAAGTTCCTCAATATGTGCTCGTCGGAGCTTCCGAAGTGTTCATGTACGTGGGTCAGCTTGAATTCTTCAACAGTCAAGCACCTGATGGGTTAAAGAGCTTTGGTAGTGCACTTTGCATGACTTCAATATCACTTGGAAACTATGTGAGTAGTTTACTGGTTACGATAGTGATGAAGTTTTCAAGTAGGGATGATATGAGTGGATGGATCCCTGGAAACCTTAACAAAGGTCATCTGGAAAGGTTTTACTTTCTCTTAGCAGCTTTGACTACTGCTGATCTCCTGGTCTATATAGTTTGTGCCAAGTGGTACAAGTATATCAAGTTTGAAGCGAAGGGAGGAGATGACCACAATGAAAATATTAGGCAAGCTGAACTTGGAGTCTGA

Protein Analysis

533

Amino Acids

59.16

Weight (kDa)

6.52

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 54 - 452 9.4e-10 Major Facilitator Superfamily
PTR2 PF00854 114 - 285 1.5e-38 POT family
PTR2 PF00854 304 - 474 3.8e-36 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 391
AccBSI CCGCTC 1 cut(s) 557
AciI CCGC 8 cut(s) 29, 106, 435, 525, 557, 753, 794, 1173
AclWI GGATC 2 cut(s) 1417, 1430
AcoI YGGCCR 2 cut(s) 3, 103
AcsI RAATTY 3 cut(s) 469, 476, 1277
AcuI CTGAAG 1 cut(s) 595
AfaI GTAC 7 cut(s) 76, 231, 407, 816, 1050, 1262, 1526
AfiI CCNNNNNNNGG 3 cut(s) 96, 994, 1050
AflIII ACRYGT 1 cut(s) 291
AjiI CACGTC 1 cut(s) 855
AjnI CCWGG 3 cut(s) 1043, 1426, 1497
AjuI GAANNNNNNNTTGG 4 cut(s) 118, 150, 155, 187
AloI GAACNNNNNNTCC 2 cut(s) 115, 147
AluBI AGCT 8 cut(s) 545, 615, 1072, 1244, 1273, 1314, 1478, 1586
AluI AGCT 8 cut(s) 545, 615, 1072, 1244, 1273, 1314, 1478, 1586
Alw21I GWGCWC 2 cut(s) 1236, 1327
Alw44I GTGCAC 1 cut(s) 1323
AlwI GGATC 2 cut(s) 1417, 1430
AlwNI CAGNNNCTG 1 cut(s) 722
AoxI GGCC 2 cut(s) 3, 103
ApaLI GTGCAC 1 cut(s) 1323
ApeKI GCWGC 4 cut(s) 143, 254, 824, 1475
ApoI RAATTY 3 cut(s) 469, 476, 1277
Asp700I GAANNNNTTC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 1172
AspS9I GGNCC 2 cut(s) 276, 559
AsuHPI GGTGA 2 cut(s) 449, 1057
AsuII TTCGAA 1 cut(s) 467
AvaII GGWCC 2 cut(s) 276, 559
AxyI CCTNAGG 1 cut(s) 783
BaeGI GKGCMC 1 cut(s) 1327
BamHI GGATCC 1 cut(s) 1422
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 1236, 1327
BbvCI CCTCAGC 2 cut(s) 249, 989
BbvI GCAGC 4 cut(s) 130, 241, 811, 1487
BccI CCATC 6 cut(s) 77, 854, 947, 1112, 1295, 1413
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 3 cut(s) 1045, 1428, 1499
BfaI CTAG 2 cut(s) 515, 801
BfmI CTRYAG 2 cut(s) 696, 714
BglI GCCNNNNNGGC 1 cut(s) 1109
BisI GCNGC 7 cut(s) 106, 144, 255, 526, 825, 1173, 1476
BlsI GCNGC 7 cut(s) 107, 145, 256, 527, 826, 1174, 1477
Bme1390I CCNGG 3 cut(s) 1045, 1428, 1499
Bme18I GGWCC 2 cut(s) 276, 559
BmgBI CACGTC 1 cut(s) 855
BmgT120I GGNCC 2 cut(s) 276, 559
BmiI GGNNCC 3 cut(s) 88, 643, 1424
BmrFI CCNGG 3 cut(s) 1045, 1428, 1499
BmrI ACTGGG 2 cut(s) 242, 340
BmsI GCATC 1 cut(s) 719
BmuI ACTGGG 2 cut(s) 242, 340
BpiI GAAGAC 1 cut(s) 465
Bpu10I CCTNAGC 2 cut(s) 249, 989
Bpu14I TTCGAA 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 404
BsaAI YACGTR 2 cut(s) 814, 1264
BsaJI CCNNGG 4 cut(s) 118, 761, 1044, 1426
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 4 cut(s) 115, 145, 186, 216
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 994, 1050
Bse118I RCCGGY 2 cut(s) 5, 1017
Bse1I ACTGG 6 cut(s) 133, 237, 335, 562, 822, 1377
Bse21I CCTNAGG 1 cut(s) 783
Bse3DI GCAATG 3 cut(s) 489, 507, 1098
BseBI CCWGG 3 cut(s) 1045, 1428, 1499
BseDI CCNNGG 4 cut(s) 118, 761, 1044, 1426
BseGI GGATG 4 cut(s) 88, 984, 1411, 1424
BseLI CCNNNNNNNGG 3 cut(s) 96, 994, 1050
BseMI GCAATG 3 cut(s) 489, 507, 1098
BseMII CTCAG 4 cut(s) 240, 797, 1003, 1134
BseNI ACTGG 6 cut(s) 133, 237, 335, 562, 822, 1377
BseRI GAGGAG 1 cut(s) 1569
BseSI GKGCMC 1 cut(s) 1327
BseXI GCAGC 4 cut(s) 130, 241, 811, 1487
BseYI CCCAGC 1 cut(s) 961
BshFI GGCC 2 cut(s) 5, 105
BsiHKAI GWGCWC 2 cut(s) 1236, 1327
BsiSI CCGG 3 cut(s) 6, 279, 1018
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 3 cut(s) 96, 994, 1050
BsmFI GGGAC 1 cut(s) 249
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 2 cut(s) 5, 105
Bsp119I TTCGAA 1 cut(s) 467
Bsp1286I GDGCHC 2 cut(s) 1236, 1327
Bsp1407I TGTACA 1 cut(s) 74
Bsp143I GATC 4 cut(s) 849, 1116, 1422, 1492
BspACI CCGC 8 cut(s) 29, 106, 435, 525, 557, 753, 794, 1173
BspANI GGCC 2 cut(s) 5, 105
BspCNI CTCAG 4 cut(s) 241, 796, 1002, 1133
BspLI GGNNCC 3 cut(s) 88, 643, 1424
BspPI GGATC 2 cut(s) 1417, 1430
BspT104I TTCGAA 1 cut(s) 467
BsrBI CCGCTC 1 cut(s) 557
BsrDI GCAATG 3 cut(s) 489, 507, 1098
BsrFI RCCGGY 2 cut(s) 5, 1017
BsrGI TGTACA 1 cut(s) 74
BsrI ACTGG 6 cut(s) 133, 237, 335, 562, 822, 1377
BssAI RCCGGY 2 cut(s) 5, 1017
BssECI CCNNGG 4 cut(s) 118, 761, 1044, 1426
BssMI GATC 4 cut(s) 849, 1116, 1422, 1492
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 3 cut(s) 1045, 1428, 1499
Bst4CI ACNGT 3 cut(s) 286, 697, 1289
Bst6I CTCTTC 2 cut(s) 306, 653
BstAUI TGTACA 1 cut(s) 74
BstBAI YACGTR 2 cut(s) 814, 1264
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 4 cut(s) 7, 727, 967, 1584
BstDEI CTNAG 7 cut(s) 10, 249, 317, 783, 989, 1120, 1471
BstF5I GGATG 4 cut(s) 88, 984, 1411, 1424
BstHHI GCGC 1 cut(s) 1172
BstKTI GATC 4 cut(s) 852, 1119, 1425, 1495
BstMBI GATC 4 cut(s) 849, 1116, 1422, 1492
BstMWI GCNNNNNNNGC 6 cut(s) 182, 254, 726, 731, 778, 1109
BstNI CCWGG 3 cut(s) 1045, 1428, 1499
BstNSI RCATGY 2 cut(s) 295, 973
BstSCI CCNGG 3 cut(s) 1043, 1426, 1497
BstSFI CTRYAG 2 cut(s) 696, 714
BstSLI GKGCMC 1 cut(s) 1327
BstV1I GCAGC 4 cut(s) 130, 241, 811, 1487
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 1422
BstYI RGATCY 1 cut(s) 1422
Bsu36I CCTNAGG 1 cut(s) 783
BsuRI GGCC 2 cut(s) 5, 105
BtrI CACGTC 1 cut(s) 855
BtsCI GGATG 4 cut(s) 88, 984, 1411, 1424
Cac8I GCNNGC 4 cut(s) 7, 727, 967, 1584
CaiI CAGNNNCTG 1 cut(s) 722
CfoI GCGC 1 cut(s) 1172
Cfr10I RCCGGY 2 cut(s) 5, 1017
Cfr13I GGNCC 2 cut(s) 276, 559
Csp6I GTAC 7 cut(s) 75, 230, 406, 815, 1049, 1261, 1525
CviAII CATG 8 cut(s) 292, 453, 730, 887, 970, 1108, 1258, 1333
CviQI GTAC 7 cut(s) 75, 230, 406, 815, 1049, 1261, 1525
DdeI CTNAG 7 cut(s) 10, 249, 317, 783, 989, 1120, 1471
DpnI GATC 4 cut(s) 851, 1118, 1424, 1494
DpnII GATC 4 cut(s) 849, 1116, 1422, 1492
DraI TTTAAA 1 cut(s) 21
DrdI GACNNNNNNGTC 1 cut(s) 391
DseDI GACNNNNNNGTC 1 cut(s) 391
EaeI YGGCCR 2 cut(s) 3, 103
Eam1104I CTCTTC 2 cut(s) 306, 653
EarI CTCTTC 2 cut(s) 306, 653
Eco130I CCWWGG 1 cut(s) 761
Eco47I GGWCC 2 cut(s) 276, 559
Eco57I CTGAAG 1 cut(s) 595
Eco81I CCTNAGG 1 cut(s) 783
EcoRI GAATTC 2 cut(s) 476, 1277
EcoRII CCWGG 3 cut(s) 1043, 1426, 1497
EcoT14I CCWWGG 1 cut(s) 761
ErhI CCWWGG 1 cut(s) 761
FaeI CATG 8 cut(s) 295, 456, 733, 890, 973, 1111, 1261, 1336
FalI AAGNNNNNCTT 1 cut(s) 1575
FaqI GGGAC 1 cut(s) 249
FatI CATG 8 cut(s) 291, 452, 729, 886, 969, 1107, 1257, 1332
FauI CCCGC 1 cut(s) 36
Fnu4HI GCNGC 7 cut(s) 106, 144, 255, 526, 825, 1173, 1476
FokI GGATG 4 cut(s) 95, 971, 1418, 1431
Fsp4HI GCNGC 7 cut(s) 106, 144, 255, 526, 825, 1173, 1476
FspBI CTAG 2 cut(s) 515, 801
GlaI GCGC 1 cut(s) 1171
GluI GCNGC 7 cut(s) 106, 144, 255, 526, 825, 1173, 1476
GsaI CCCAGC 1 cut(s) 965
HaeIII GGCC 2 cut(s) 5, 105
HapII CCGG 3 cut(s) 6, 279, 1018
HhaI GCGC 1 cut(s) 1172
Hin1II CATG 8 cut(s) 295, 456, 733, 890, 973, 1111, 1261, 1336
Hin6I GCGC 1 cut(s) 1170
HinP1I GCGC 1 cut(s) 1170
HinfI GANTC 5 cut(s) 163, 323, 634, 1062, 1596
HpaII CCGG 3 cut(s) 6, 279, 1018
HphI GGTGA 2 cut(s) 449, 1057
Hpy166II GTNNAC 4 cut(s) 205, 289, 1325, 1370
Hpy188I TCNGA 7 cut(s) 119, 859, 904, 912, 1241, 1249, 1601
Hpy188III TCNNGA 3 cut(s) 220, 1028, 1451
Hpy8I GTNNAC 4 cut(s) 205, 289, 1325, 1370
Hpy99I CGWCG 1 cut(s) 1241
HpyAV CCTTC 4 cut(s) 581, 616, 835, 1543
HpyCH4III ACNGT 3 cut(s) 286, 697, 1289
HpyCH4IV ACGT 4 cut(s) 404, 813, 854, 1263
HpyCH4V TGCA 8 cut(s) 113, 146, 257, 512, 827, 1157, 1325, 1332
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 254, 726, 731, 778, 1109
HpyF3I CTNAG 7 cut(s) 10, 249, 317, 783, 989, 1120, 1471
HpySE526I ACGT 4 cut(s) 404, 813, 854, 1263
Hsp92II CATG 8 cut(s) 295, 456, 733, 890, 973, 1111, 1261, 1336
HspAI GCGC 1 cut(s) 1170
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 4 cut(s) 849, 1116, 1422, 1492
LmnI GCTCC 4 cut(s) 86, 554, 647, 1241
Lsp1109I GCAGC 4 cut(s) 130, 241, 811, 1487
LweI GCATC 1 cut(s) 719
MaeI CTAG 2 cut(s) 515, 801
MaeII ACGT 4 cut(s) 404, 813, 854, 1263
MaeIII GTNAC 4 cut(s) 393, 590, 809, 1375
MalI GATC 4 cut(s) 851, 1118, 1424, 1494
MbiI CCGCTC 1 cut(s) 557
MboI GATC 4 cut(s) 849, 1116, 1422, 1492
MboII GAAGA 8 cut(s) 53, 56, 293, 470, 601, 640, 1000, 1273
MflI RGATCY 1 cut(s) 1422
MhlI GDGCHC 2 cut(s) 1236, 1327
MluCI AATT 7 cut(s) 147, 469, 476, 600, 999, 1165, 1277
MlyI GAGTC 1 cut(s) 1056
MmeI TCCRAC 1 cut(s) 1219
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 6 cut(s) 20, 777, 846, 1148, 1307, 1437
MslI CAYNNNNRTG 4 cut(s) 158, 876, 1112, 1262
MspI CCGG 3 cut(s) 6, 279, 1018
MspR9I CCNGG 3 cut(s) 1045, 1428, 1499
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 3 cut(s) 1045, 1428, 1499
MwoI GCNNNNNNNGC 6 cut(s) 182, 254, 726, 731, 778, 1109
NaeI GCCGGC 1 cut(s) 7
NdeII GATC 4 cut(s) 849, 1116, 1422, 1492
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 8 cut(s) 295, 456, 733, 890, 973, 1111, 1261, 1336
NlaIV GGNNCC 3 cut(s) 88, 643, 1424
NmuCI GTSAC 3 cut(s) 393, 590, 809
NspI RCATGY 2 cut(s) 295, 973
NspV TTCGAA 1 cut(s) 467
PciI ACATGT 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 1245
PctI GAATGC 1 cut(s) 185
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 3 cut(s) 163, 323, 634
PkrI GCNGC 7 cut(s) 107, 145, 256, 527, 826, 1174, 1477
PleI GAGTC 1 cut(s) 1056
PpsI GAGTC 1 cut(s) 1056
Ppu21I YACGTR 2 cut(s) 814, 1264
PscI ACATGT 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 1043, 1426, 1497
PspFI CCCAGC 1 cut(s) 961
PspGI CCWGG 3 cut(s) 1043, 1426, 1497
PspN4I GGNNCC 3 cut(s) 88, 643, 1424
PspPI GGNCC 2 cut(s) 276, 559
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 1 cut(s) 1422
RsaI GTAC 7 cut(s) 76, 231, 407, 816, 1050, 1262, 1526
RsaNI GTAC 7 cut(s) 75, 230, 406, 815, 1049, 1261, 1525
RseI CAYNNNNRTG 4 cut(s) 158, 876, 1112, 1262
SaqAI TTAA 6 cut(s) 20, 777, 846, 1148, 1307, 1437
SatI GCNGC 7 cut(s) 106, 144, 255, 526, 825, 1173, 1476
Sau3AI GATC 4 cut(s) 849, 1116, 1422, 1492
Sau96I GGNCC 2 cut(s) 276, 559
SchI GAGTC 1 cut(s) 1056
ScrFI CCNGG 3 cut(s) 1045, 1428, 1499
SduI GDGCHC 2 cut(s) 1236, 1327
SfaNI GCATC 1 cut(s) 719
SfcI CTRYAG 2 cut(s) 696, 714
SfuI TTCGAA 1 cut(s) 467
SinI GGWCC 2 cut(s) 276, 559
SmiMI CAYNNNNRTG 4 cut(s) 158, 876, 1112, 1262
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 7 cut(s) 147, 469, 476, 600, 999, 1165, 1277
SsiI CCGC 8 cut(s) 29, 106, 435, 525, 557, 753, 794, 1173
SspI AATATT 2 cut(s) 663, 1576
SspMI CTAG 2 cut(s) 515, 801
StyD4I CCNGG 3 cut(s) 1043, 1426, 1497
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 3 cut(s) 286, 697, 1289
TaiI ACGT 4 cut(s) 407, 816, 857, 1266
TaqI TCGA 4 cut(s) 467, 596, 981, 1029
TasI AATT 7 cut(s) 147, 469, 476, 600, 999, 1165, 1277
TatI WGTACW 1 cut(s) 74
TauI GCSGC 3 cut(s) 108, 528, 1175
TfiI GAWTC 3 cut(s) 163, 323, 634
Tru1I TTAA 6 cut(s) 20, 777, 846, 1148, 1307, 1437
Tru9I TTAA 6 cut(s) 20, 777, 846, 1148, 1307, 1437
TseFI GTSAC 3 cut(s) 393, 590, 809
TseI GCWGC 4 cut(s) 143, 254, 824, 1475
Tsp45I GTSAC 3 cut(s) 393, 590, 809
TspDTI ATGAA 6 cut(s) 54, 944, 1000, 1246, 1403, 1584
TspGWI ACGGA 1 cut(s) 1066
VneI GTGCAC 1 cut(s) 1323
VpaK11BI GGWCC 2 cut(s) 276, 559
XapI RAATTY 3 cut(s) 469, 476, 1277
XceI RCATGY 2 cut(s) 295, 973
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 2 cut(s) 515, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.