Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002904

Physical Location & Seq

Genomic Coordinates Forward (+)

12479580 .. 12479948

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55450

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTATGCTCTCAGCAGGAGTTGTGGAGTGTTTTAGGTTAAAATATGCAAGAACAAATTGCGTCACTACTGATTGTGAGAGTCGAAGTTCATTGAGCATATTTTGGCAAGTTCCTCAATATGTGCTCATCGGAGCTTCTGAAGTGTTCATGTACGTGGGTCAGCTAGAATTCTTCAACAGTCAAGCACCTGATGGGTTAAAGAGCTTCAGTAGTGCACTTTGCATGACTTCAATATCACTTAGAAACTATGTGAGTAGTTTGCTGGTTACGATAGTGATAAAGTTTTCTAGTAGGGATAATATATTTGGATGGATCCTTGGAAACCTTAACAACAGTCGCTTGGATAGGTTTTACTTTCTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010038 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046686 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

122

Amino Acids

13.81

Weight (kDa)

8.42

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 106	8.4e-17	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21680
fragaria_vesca	FvH4_7g07900
malus_domestica	MD02G1228800.v1.1 MD07G1082700.v1.1
prunus_persica	Prupe.2G110400_v2.0.a1
pyrus_communis	pycom02g19760 pycom07g06610
rosa_chinensis	RchiOBHm_Chr1g0324671 RchiOBHm_Chr1g0341461 RchiOBHm_Chr1g0341491 RchiOBHm_Chr1g0341501
rosa_laevigata	RLG00000029091 RLG00000029095 RLG00000029096 RLG00000029100
rosa_multiflora	Rmu_sc0003672.1_g000005 Rmu_sc0004903.1_g000009 Rmu_sc0006027.1_g000013 Rmu_sc0014111.1_g000001 Rmu_ssc0000295.1_g000062
rosa_roxburghii	Rroxscaffold_4G00312080 Rroxscaffold_4G00312110 Rroxscaffold_4G00312170
rosa_rugosa	Rorug01G0156400.1 Rorug01G0156500.1
rosa_samantha	Rh1AG171000 Rh1BG139000 Rh1BG139200 Rh1BG139300 Rh1BG139400 Rh1CG159300 Rh1CG159500 Rh1DG171500 Rh1DG171600 Rh1DG171800
rosa_wichuraiana	Rw1G014260 Rw1G014280 Rw1G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	310, 323
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	2 cut(s)	162, 193
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	178, 234
AluBI	AGCT	3 cut(s)	137, 166, 207
AluI	AGCT	3 cut(s)	137, 166, 207
Alw21I	GWGCWC	2 cut(s)	129, 220
Alw44I	GTGCAC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	310, 323
ApaLI	GTGCAC	1 cut(s)	216
ApoI	RAATTY	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	315
Bbv12I	GWGCWC	2 cut(s)	129, 220
BccI	CCATC	2 cut(s)	188, 306
BfaI	CTAG	2 cut(s)	167, 291
BmiI	GGNNCC	1 cut(s)	317
BsaAI	YACGTR	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	129, 220
Bsp1286I	GDGCHC	2 cut(s)	129, 220
Bsp143I	GATC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	317
BspPI	GGATC	2 cut(s)	310, 323
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	319
Bst4CI	ACNGT	2 cut(s)	182, 338
BstBAI	YACGTR	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	13, 242
BstF5I	GGATG	1 cut(s)	317
BstKTI	GATC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	317
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	151, 226
CviJI	RGCY	4 cut(s)	5, 137, 166, 207
CviKI_1	RGCY	4 cut(s)	5, 137, 166, 207
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	13, 242
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	162, 193
EcoRI	GAATTC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	154, 229
FaiI	YATR	9 cut(s)	8, 48, 101, 123, 152, 227, 252, 305, 367
FatI	CATG	2 cut(s)	150, 225
FokI	GGATG	1 cut(s)	324
FspBI	CTAG	2 cut(s)	167, 291
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	154, 229
HinfI	GANTC	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	134, 142
Hpy8I	GTNNAC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	182, 338
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	50, 218, 225
HpyF3I	CTNAG	2 cut(s)	13, 242
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	154, 229
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	3 cut(s)	3, 204, 251
MaeI	CTAG	2 cut(s)	167, 291
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	64, 268
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	1 cut(s)	166
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	129, 220
MluCI	AATT	2 cut(s)	58, 170
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	1 cut(s)	126
MseI	TTAA	3 cut(s)	41, 200, 330
MslI	CAYNNNNRTG	1 cut(s)	155
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	2 cut(s)	154, 229
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	315
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	3 cut(s)	41, 200, 330
Sau3AI	GATC	1 cut(s)	315
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	2 cut(s)	129, 220
SetI	ASST	8 cut(s)	41, 139, 159, 168, 193, 209, 330, 353
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	58, 170
SspMI	CTAG	2 cut(s)	167, 291
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	182, 338
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	58, 170
Tru1I	TTAA	3 cut(s)	41, 200, 330
Tru9I	TTAA	3 cut(s)	41, 200, 330
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	81, 139
VneI	GTGCAC	1 cut(s)	216
XapI	RAATTY	1 cut(s)	170
XspI	CTAG	2 cut(s)	167, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.