Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002904

Physical Location & Seq

Genomic Coordinates Reverse (-)

23215464 .. 23216171

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG139300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCCTCCCTCTTTGTTGAACAAGGTGCTGTAATGAAAACCACCATCTCCAAGTTCCACATTCCCCCAGCGAGCATGTCAAGTTTCGACATCCTTAGCGTGGCAATTTTTATCTTCATTTACCGGCGAGTTCTCGACCCAGTCGTTGCCAGGGTACGGAAAAAAGGAATCACCGAGCTTCAAAGAATGGGGATTGGTCTTGTCATTGCCATCATGGCTATGATCTCAGCAGGAGTTGTGGAATGTTTTAGGTTAAAATATGCAAGAACAAATTGCGCCGCTACCGATTGTGAGAGTCCAAGTTCATTGAGCATATTTTGGCAAGTTCCTCAATACATGCTTGTCGGAGCTTCCGAAGTGTTCATGTACGTGGGTCAGCTAGAATTCTTCAACAGTCAAGCACCTGATGGGTTAAAGAGCTTTGGTAGTGCACTTTGCATGACTTCAATATCACTTGGAAACTATGTGAGTAGTTTGCTGGTTACGATAGTGATGAAGTTTTCTAGTAGGGATGATATGAGTGGATGGATCCCTGGAAACCTTAACAAAGGTCATCTGGATAGGTTTTACTTTCTCTTAGCAGCTTTGACTACTGCTGATCTCATGGTCTATATAGTTTGTGCCAAGTGGTACAAGTATATCAAGTTTGAATCAAAGGGAGGAGATGGCCACAATGAAAATATTTGGCAAGCTGAACTTGGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010038 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046686 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

235

Amino Acids

26.09

Weight (kDa)

8.55

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 176	5.1e-38	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21680
fragaria_vesca	FvH4_7g07900
malus_domestica	MD02G1228800.v1.1 MD07G1082700.v1.1
prunus_persica	Prupe.2G110400_v2.0.a1
pyrus_communis	pycom02g19760 pycom07g06610
rosa_chinensis	RchiOBHm_Chr1g0324671 RchiOBHm_Chr1g0341461 RchiOBHm_Chr1g0341491 RchiOBHm_Chr1g0341501
rosa_laevigata	RLG00000029091 RLG00000029095 RLG00000029096 RLG00000029100
rosa_multiflora	Rmu_sc0003672.1_g000005 Rmu_sc0004903.1_g000009 Rmu_sc0006027.1_g000013 Rmu_sc0014111.1_g000001 Rmu_ssc0000295.1_g000062
rosa_roxburghii	Rroxscaffold_4G00312080 Rroxscaffold_4G00312110 Rroxscaffold_4G00312170
rosa_rugosa	Rorug01G0156400.1 Rorug01G0156500.1
rosa_samantha	Rh1AG171000 Rh1BG139000 Rh1BG139200 Rh1BG139300 Rh1BG139400 Rh1CG159300 Rh1CG159500 Rh1DG171500 Rh1DG171600 Rh1DG171800
rosa_wichuraiana	Rw1G014260 Rw1G014280 Rw1G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	2 cut(s)	523, 536
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	383
AfaI	GTAC	3 cut(s)	156, 368, 632
AfiI	CCNNNNNNNGG	2 cut(s)	100, 156
AgsI	TTSAA	5 cut(s)	20, 182, 391, 447, 650
AjnI	CCWGG	2 cut(s)	149, 532
AluBI	AGCT	6 cut(s)	178, 350, 379, 420, 584, 692
AluI	AGCT	6 cut(s)	178, 350, 379, 420, 584, 692
Alw21I	GWGCWC	1 cut(s)	433
Alw44I	GTGCAC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	523, 536
AoxI	GGCC	2 cut(s)	3, 667
ApaLI	GTGCAC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	433
BalI	TGGCCA	1 cut(s)	669
BamHI	GGATCC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	5 cut(s)	53, 218, 401, 519, 659
BciT130I	CCWGG	2 cut(s)	151, 534
BfaI	CTAG	2 cut(s)	380, 504
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	279, 582
BlsI	GCNGC	2 cut(s)	280, 583
Bme1390I	CCNGG	2 cut(s)	151, 534
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	2 cut(s)	151, 534
BmrI	ACTGGG	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	150, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 156
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	151, 534
BseDI	CCNNGG	2 cut(s)	150, 532
BseGI	GGATG	3 cut(s)	90, 517, 530
BseLI	CCNNNNNNNGG	2 cut(s)	100, 156
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	675
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	593
BseYI	CCCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	5, 669
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	100, 156
BsnI	GGCC	2 cut(s)	5, 669
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	222, 528, 598
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	2 cut(s)	5, 669
BspCNI	CTCAG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	530
BspPI	GGATC	2 cut(s)	523, 536
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	150, 532
BssMI	GATC	3 cut(s)	222, 528, 598
Bst2UI	CCWGG	2 cut(s)	151, 534
Bst4CI	ACNGT	1 cut(s)	395
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	73, 690
BstDEI	CTNAG	3 cut(s)	95, 226, 577
BstF5I	GGATG	3 cut(s)	90, 517, 530
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	3 cut(s)	225, 531, 601
BstMBI	GATC	3 cut(s)	222, 528, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	2 cut(s)	151, 534
BstNSI	RCATGY	2 cut(s)	79, 340
BstSCI	CCNGG	2 cut(s)	149, 532
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	5, 669
BtsCI	GGATG	3 cut(s)	90, 517, 530
Cac8I	GCNNGC	2 cut(s)	73, 690
CfoI	GCGC	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	155, 367, 631
CviAII	CATG	6 cut(s)	76, 214, 337, 364, 439, 604
CviJI	RGCY	9 cut(s)	5, 178, 218, 350, 379, 420, 584, 669, 692
CviKI_1	RGCY	9 cut(s)	5, 178, 218, 350, 379, 420, 584, 669, 692
CviQI	GTAC	3 cut(s)	155, 367, 631
DdeI	CTNAG	3 cut(s)	95, 226, 577
DpnI	GATC	3 cut(s)	224, 530, 600
DpnII	GATC	3 cut(s)	222, 528, 598
EaeI	YGGCCR	1 cut(s)	667
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	149, 532
FaeI	CATG	6 cut(s)	79, 217, 340, 367, 442, 607
FalI	AAGNNNNNCTT	1 cut(s)	681
FatI	CATG	6 cut(s)	75, 213, 336, 363, 438, 603
Fnu4HI	GCNGC	2 cut(s)	279, 582
FokI	GGATG	3 cut(s)	77, 524, 537
Fsp4HI	GCNGC	2 cut(s)	279, 582
FspBI	CTAG	2 cut(s)	380, 504
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	2 cut(s)	279, 582
GsaI	CCCAGC	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	5, 669
HapII	CCGG	1 cut(s)	124
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	6 cut(s)	79, 217, 340, 367, 442, 607
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	3 cut(s)	168, 295, 650
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	2 cut(s)	347, 355
Hpy188III	TCNNGA	2 cut(s)	134, 557
Hpy8I	GTNNAC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	263, 431, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	3 cut(s)	95, 226, 577
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	6 cut(s)	79, 217, 340, 367, 442, 607
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	222, 528, 598
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	1 cut(s)	593
MaeI	CTAG	2 cut(s)	380, 504
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	3 cut(s)	224, 530, 600
MboI	GATC	3 cut(s)	222, 528, 598
MboII	GAAGA	2 cut(s)	106, 379
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	433
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	3 cut(s)	105, 271, 383
MluNI	TGGCCA	1 cut(s)	669
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	16, 20, 339, 653
Mox20I	TGGCCA	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	3 cut(s)	254, 413, 543
MslI	CAYNNNNRTG	2 cut(s)	218, 368
Msp20I	TGGCCA	1 cut(s)	669
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	2 cut(s)	151, 534
MvaI	CCWGG	2 cut(s)	151, 534
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	3 cut(s)	222, 528, 598
NlaIII	CATG	6 cut(s)	79, 217, 340, 367, 442, 607
NlaIV	GGNNCC	1 cut(s)	530
NspI	RCATGY	2 cut(s)	79, 340
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 351
PfeI	GAWTC	2 cut(s)	168, 650
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	280, 583
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
Ppu21I	YACGTR	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	149, 532
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	2 cut(s)	149, 532
PspN4I	GGNNCC	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	528
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	3 cut(s)	156, 368, 632
RsaNI	GTAC	3 cut(s)	155, 367, 631
RseI	CAYNNNNRTG	2 cut(s)	218, 368
SaqAI	TTAA	3 cut(s)	254, 413, 543
SatI	GCNGC	2 cut(s)	279, 582
Sau3AI	GATC	3 cut(s)	222, 528, 598
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	151, 534
SduI	GDGCHC	1 cut(s)	433
SmiMI	CAYNNNNRTG	2 cut(s)	218, 368
Sse9I	AATT	3 cut(s)	105, 271, 383
SsiI	CCGC	1 cut(s)	279
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	2 cut(s)	380, 504
StyD4I	CCNGG	2 cut(s)	149, 532
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	87, 135
TasI	AATT	3 cut(s)	105, 271, 383
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	168, 650
Tru1I	TTAA	3 cut(s)	254, 413, 543
Tru9I	TTAA	3 cut(s)	254, 413, 543
TseI	GCWGC	1 cut(s)	581
TspDTI	ATGAA	6 cut(s)	50, 106, 294, 352, 509, 690
TspGWI	ACGGA	1 cut(s)	172
Tth111I	GACNNNGTC	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	429
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	2 cut(s)	79, 340
XspI	CTAG	2 cut(s)	380, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.