Rroxscaffold_4G00312080

POT family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
34783281 .. 34788133
4853 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00312080.1

Sequence Viewer

Length: 1503 bp
ATGACAAAAACTTGTACTATGGATGGAGCCGTTGATTGGAATGGCCGCCCTGCAATCCGAGGGAGAACTGGTTCTTGGGTTGCTGCAATTCTCATATTAGGAGTGAACTTGGTATTGTTCTTGACAAGGGTACTGGGACAGGACAACGCTGAGGCTGCAAACAATGTCAGCAAATGGACCGGAACAGTTTACATTTTCTCTCTTCTTGGGGCTTTTCTTAGTGATTCGTACTGGGGGAGATACAAAACTTGTGCTATCTTTCAACTTATTTTTGTCATTGGCTTGACATTATTATCAGTAACAACCTACCTATTCCTGCTCAAGCCTAAAGGTTGCGGTGATGAGCAATCTCCATGTAGAGACCATTCGAATTTTGAATTCGCATTGTTTTACATCTCCATATATCTCATTGCATTAGGGAATGGAGGCTACCAACCTACCATAGCTACATTTGGAGCGGATCAGTTTGATGAGGACGACCCCAAAGAAAGTCACTCGAAAATTGCCTTCTTCAGCTATTTCTACTTGGCTTTGAATCTTGGCTCCCTCTTTTCTAACACAATATTAGGGTATTTTGAGGATAAAGGAATATGGACAGTTGGGTTTTGGGCATCTACAGGCTCTGCTGGCATGGCATTGATTTTGTTTCTTTGCGGAACTCCAAGGTATAGGCATTTTAAGCCTCAGGGCAATCCTCTTTCTAGGTTATGTCACGTACTGGTTGCTGCAACAAGGAAATGGAAGGTCAAGATCACGTCAGATGGAGATGATCATTTGTATGAGGAACGTGGGAAACAATGCTCTGAAAATCAGAAACAAGGTGCTGTAATGAAAACCACCATCTCCAAGTTCCACATTCCCCCAGCGAGCATGTCAAGTTTCGACATCCTTAGCGTGGCAACTTTTATCTTCATTTACCGGCGAGTTCTCGACCCACTGGTTGCCAGGGTACGGAAAAAAGGACTCACCGAGCTTCAAAGAATGGGGATTGGTCTTGTCATTGCCATCATGGCTATGATCTCAGCAGGAGTTGTGGAATGTTTTAGGTTAAAATACGCAAGAACAAATTGCGCCACTACCGATTGTGAGAGTCCAAGTTCATTGAGCATATTTTGGCAAGTTCCTCAATACGTGCTCGTCGGAGCTTCCGAAGTGTTCATGTACGTTGGTCAGCTAGAATTCTTCAACAGTCAAGCACCTGATGGGTTAAAGAGCTTTGGTAGTGCACTTTGCATGACTTCAATATCACTTGGAAACTATGTGAGTAGTTTGCTGGTTACGATAGTGATGAAGTTTTCTAGTAGGGATGATATGAGTGGATGGATCCCTGGAAACCTTAACAAAGGTCATCTGGATAGGTTTTACTTTCTCTTAGCAGCTTTGACTACTGCTGATCTCATGGTCTATATAGTTTGTGCCAAGTGGTACAAGTATATCAAGTTTGAATCAAAGGGAGGAGATGGTCACAATGAAAATATTTGGCAAGCTGAACTTGGAGTCTGA

Protein Analysis

500

Amino Acids

55.6

Weight (kDa)

8.58

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 32 - 418 1.2e-08 Major Facilitator Superfamily
PTR2 PF00854 81 - 252 1.2e-38 POT family
PTR2 PF00854 271 - 441 4.5e-35 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 458
AciI CCGC 4 cut(s) 46, 336, 458, 654
AclWI GGATC 3 cut(s) 468, 1318, 1331
AcoI YGGCCR 1 cut(s) 43
AcsI RAATTY 3 cut(s) 370, 377, 1178
AcuI CTGAAG 1 cut(s) 496
AfaI GTAC 7 cut(s) 16, 132, 230, 717, 951, 1163, 1427
AfiI CCNNNNNNNGG 3 cut(s) 36, 895, 951
AgsI TTSAA 7 cut(s) 263, 377, 535, 977, 1186, 1242, 1445
AjiI CACGTC 1 cut(s) 756
AjnI CCWGG 2 cut(s) 944, 1327
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 8 cut(s) 446, 516, 973, 1145, 1174, 1215, 1379, 1487
AluI AGCT 8 cut(s) 446, 516, 973, 1145, 1174, 1215, 1379, 1487
Alw21I GWGCWC 2 cut(s) 1137, 1228
Alw26I GTCTC 1 cut(s) 354
Alw44I GTGCAC 1 cut(s) 1224
AlwI GGATC 3 cut(s) 468, 1318, 1331
AlwNI CAGNNNCTG 1 cut(s) 623
AoxI GGCC 1 cut(s) 43
ApaLI GTGCAC 1 cut(s) 1224
ApeKI GCWGC 4 cut(s) 83, 155, 725, 1376
ApoI RAATTY 3 cut(s) 370, 377, 1178
Asp700I GAANNNNTTC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 1073
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 350, 958
AsuII TTCGAA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 177
AxyI CCTNAGG 1 cut(s) 684
BaeGI GKGCMC 1 cut(s) 1228
BamHI GGATCC 1 cut(s) 1323
Bbv12I GWGCWC 2 cut(s) 1137, 1228
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 4 cut(s) 70, 142, 712, 1388
BccI CCATC 7 cut(s) 17, 755, 848, 1013, 1196, 1314, 1454
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 2 cut(s) 946, 1329
BclI TGATCA 1 cut(s) 769
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 3 cut(s) 702, 1175, 1299
BfmI CTRYAG 1 cut(s) 615
BglI GCCNNNNNGGC 1 cut(s) 1010
BisI GCNGC 5 cut(s) 46, 84, 156, 726, 1377
BlsI GCNGC 5 cut(s) 47, 85, 157, 727, 1378
Bme1390I CCNGG 2 cut(s) 946, 1329
Bme18I GGWCC 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 756
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 3 cut(s) 28, 544, 1325
BmrFI CCNGG 2 cut(s) 946, 1329
BmrI ACTGGG 2 cut(s) 143, 241
BmsI GCATC 1 cut(s) 620
BmuI ACTGGG 2 cut(s) 143, 241
Bpu10I CCTNAGC 2 cut(s) 150, 890
Bpu14I TTCGAA 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 305
BsaAI YACGTR 2 cut(s) 715, 1132
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 58, 662, 945, 1327
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 895, 951
Bse118I RCCGGY 1 cut(s) 918
Bse1I ACTGG 5 cut(s) 73, 138, 236, 723, 942
Bse21I CCTNAGG 1 cut(s) 684
Bse3DI GCAATG 2 cut(s) 408, 999
BseBI CCWGG 2 cut(s) 946, 1329
BseDI CCNNGG 4 cut(s) 58, 662, 945, 1327
BseGI GGATG 4 cut(s) 28, 885, 1312, 1325
BseLI CCNNNNNNNGG 3 cut(s) 36, 895, 951
BseMI GCAATG 2 cut(s) 408, 999
BseMII CTCAG 3 cut(s) 141, 698, 1035
BseNI ACTGG 5 cut(s) 73, 138, 236, 723, 942
BseRI GAGGAG 1 cut(s) 1470
BseSI GKGCMC 1 cut(s) 1228
BseXI GCAGC 4 cut(s) 70, 142, 712, 1388
BseYI CCCAGC 1 cut(s) 862
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 1137, 1228
BsiSI CCGG 2 cut(s) 180, 919
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 3 cut(s) 36, 895, 951
BsmAI GTCTC 1 cut(s) 354
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 354
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 1137, 1228
Bsp143I GATC 6 cut(s) 460, 750, 769, 1017, 1323, 1393
BspACI CCGC 4 cut(s) 46, 336, 458, 654
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 3 cut(s) 142, 697, 1034
BspLI GGNNCC 3 cut(s) 28, 544, 1325
BspPI GGATC 3 cut(s) 468, 1318, 1331
BspT104I TTCGAA 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 354
BsrBI CCGCTC 1 cut(s) 458
BsrDI GCAATG 2 cut(s) 408, 999
BsrFI RCCGGY 1 cut(s) 918
BsrI ACTGG 5 cut(s) 73, 138, 236, 723, 942
BssAI RCCGGY 1 cut(s) 918
BssECI CCNNGG 4 cut(s) 58, 662, 945, 1327
BssMI GATC 6 cut(s) 460, 750, 769, 1017, 1323, 1393
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 2 cut(s) 946, 1329
Bst4CI ACNGT 3 cut(s) 187, 598, 1190
Bst6I CTCTTC 1 cut(s) 207
BstBAI YACGTR 2 cut(s) 715, 1132
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 3 cut(s) 628, 868, 1485
BstDEI CTNAG 6 cut(s) 150, 218, 684, 890, 1021, 1372
BstF5I GGATG 4 cut(s) 28, 885, 1312, 1325
BstHHI GCGC 1 cut(s) 1073
BstKTI GATC 6 cut(s) 463, 753, 772, 1020, 1326, 1396
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 6 cut(s) 460, 750, 769, 1017, 1323, 1393
BstMWI GCNNNNNNNGC 5 cut(s) 155, 627, 632, 679, 1010
BstNI CCWGG 2 cut(s) 946, 1329
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 2 cut(s) 944, 1327
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 1 cut(s) 1228
BstV1I GCAGC 4 cut(s) 70, 142, 712, 1388
BstX2I RGATCY 1 cut(s) 1323
BstYI RGATCY 1 cut(s) 1323
Bsu36I CCTNAGG 1 cut(s) 684
BsuRI GGCC 1 cut(s) 45
BtrI CACGTC 1 cut(s) 756
BtsCI GGATG 4 cut(s) 28, 885, 1312, 1325
BtsIMutI CAGTG 1 cut(s) 935
Cac8I GCNNGC 3 cut(s) 628, 868, 1485
CaiI CAGNNNCTG 1 cut(s) 623
CfoI GCGC 1 cut(s) 1073
Cfr10I RCCGGY 1 cut(s) 918
Cfr13I GGNCC 1 cut(s) 177
Csp6I GTAC 7 cut(s) 15, 131, 229, 716, 950, 1162, 1426
CviAII CATG 7 cut(s) 354, 631, 871, 1009, 1159, 1234, 1399
CviQI GTAC 7 cut(s) 15, 131, 229, 716, 950, 1162, 1426
DdeI CTNAG 6 cut(s) 150, 218, 684, 890, 1021, 1372
DpnI GATC 6 cut(s) 462, 752, 771, 1019, 1325, 1395
DpnII GATC 6 cut(s) 460, 750, 769, 1017, 1323, 1393
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 662
Eco31I GGTCTC 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 496
Eco81I CCTNAGG 1 cut(s) 684
EcoRI GAATTC 2 cut(s) 377, 1178
EcoRII CCWGG 2 cut(s) 944, 1327
EcoT14I CCWWGG 1 cut(s) 662
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 7 cut(s) 357, 634, 874, 1012, 1162, 1237, 1402
FalI AAGNNNNNCTT 1 cut(s) 1476
FaqI GGGAC 1 cut(s) 150
FatI CATG 7 cut(s) 353, 630, 870, 1008, 1158, 1233, 1398
FbaI TGATCA 1 cut(s) 769
Fnu4HI GCNGC 5 cut(s) 46, 84, 156, 726, 1377
FokI GGATG 4 cut(s) 35, 872, 1319, 1332
Fsp4HI GCNGC 5 cut(s) 46, 84, 156, 726, 1377
FspBI CTAG 3 cut(s) 702, 1175, 1299
GlaI GCGC 1 cut(s) 1072
GluI GCNGC 5 cut(s) 46, 84, 156, 726, 1377
GsaI CCCAGC 1 cut(s) 866
HaeIII GGCC 1 cut(s) 45
HapII CCGG 2 cut(s) 180, 919
HhaI GCGC 1 cut(s) 1073
Hin1II CATG 7 cut(s) 357, 634, 874, 1012, 1162, 1237, 1402
Hin6I GCGC 1 cut(s) 1071
HinP1I GCGC 1 cut(s) 1071
HinfI GANTC 6 cut(s) 224, 535, 963, 1090, 1445, 1497
HpaII CCGG 2 cut(s) 180, 919
HphI GGTGA 2 cut(s) 350, 958
Hpy166II GTNNAC 3 cut(s) 106, 190, 1226
Hpy188I TCNGA 7 cut(s) 59, 760, 805, 813, 1142, 1150, 1502
Hpy188III TCNNGA 4 cut(s) 121, 748, 929, 1352
Hpy8I GTNNAC 3 cut(s) 106, 190, 1226
Hpy99I CGWCG 1 cut(s) 1142
HpyAV CCTTC 2 cut(s) 517, 736
HpyCH4III ACNGT 3 cut(s) 187, 598, 1190
HpyCH4IV ACGT 5 cut(s) 714, 755, 787, 1131, 1164
HpyCH4V TGCA 7 cut(s) 53, 86, 158, 413, 728, 1226, 1233
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 627, 632, 679, 1010
HpyF3I CTNAG 6 cut(s) 150, 218, 684, 890, 1021, 1372
HpySE526I ACGT 5 cut(s) 714, 755, 787, 1131, 1164
Hsp92II CATG 7 cut(s) 357, 634, 874, 1012, 1162, 1237, 1402
HspAI GCGC 1 cut(s) 1071
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 6 cut(s) 460, 750, 769, 1017, 1323, 1393
LmnI GCTCC 4 cut(s) 26, 455, 548, 1142
Lsp1109I GCAGC 4 cut(s) 70, 142, 712, 1388
LweI GCATC 1 cut(s) 620
MaeI CTAG 3 cut(s) 702, 1175, 1299
MaeII ACGT 5 cut(s) 714, 755, 787, 1131, 1164
MaeIII GTNAC 5 cut(s) 298, 491, 710, 1276, 1463
MalI GATC 6 cut(s) 462, 752, 771, 1019, 1325, 1395
MbiI CCGCTC 1 cut(s) 458
MboI GATC 6 cut(s) 460, 750, 769, 1017, 1323, 1393
MboII GAAGA 4 cut(s) 194, 502, 901, 1174
MflI RGATCY 1 cut(s) 1323
MhlI GDGCHC 2 cut(s) 1137, 1228
MluCI AATT 6 cut(s) 87, 370, 377, 501, 1066, 1178
MlyI GAGTC 2 cut(s) 957, 1099
MmeI TCCRAC 1 cut(s) 1120
MroXI GAANNNNTTC 1 cut(s) 70
MseI TTAA 4 cut(s) 678, 1049, 1208, 1338
MslI CAYNNNNRTG 2 cut(s) 777, 1013
MspI CCGG 2 cut(s) 180, 919
MspR9I CCNGG 2 cut(s) 946, 1329
MvaI CCWGG 2 cut(s) 946, 1329
MwoI GCNNNNNNNGC 5 cut(s) 155, 627, 632, 679, 1010
NdeII GATC 6 cut(s) 460, 750, 769, 1017, 1323, 1393
NlaIII CATG 7 cut(s) 357, 634, 874, 1012, 1162, 1237, 1402
NlaIV GGNNCC 3 cut(s) 28, 544, 1325
NmuCI GTSAC 3 cut(s) 491, 710, 1463
NspI RCATGY 1 cut(s) 874
NspV TTCGAA 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 1146
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 3 cut(s) 224, 535, 1445
PkrI GCNGC 5 cut(s) 47, 85, 157, 727, 1378
PleI GAGTC 2 cut(s) 957, 1098
PpsI GAGTC 2 cut(s) 957, 1098
Ppu21I YACGTR 2 cut(s) 715, 1132
Psp6I CCWGG 2 cut(s) 944, 1327
PspFI CCCAGC 1 cut(s) 862
PspGI CCWGG 2 cut(s) 944, 1327
PspN4I GGNNCC 3 cut(s) 28, 544, 1325
PspPI GGNCC 1 cut(s) 177
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 1 cut(s) 1323
RsaI GTAC 7 cut(s) 16, 132, 230, 717, 951, 1163, 1427
RsaNI GTAC 7 cut(s) 15, 131, 229, 716, 950, 1162, 1426
RseI CAYNNNNRTG 2 cut(s) 777, 1013
SaqAI TTAA 4 cut(s) 678, 1049, 1208, 1338
SatI GCNGC 5 cut(s) 46, 84, 156, 726, 1377
Sau3AI GATC 6 cut(s) 460, 750, 769, 1017, 1323, 1393
Sau96I GGNCC 1 cut(s) 177
SchI GAGTC 2 cut(s) 957, 1099
ScrFI CCNGG 2 cut(s) 946, 1329
SduI GDGCHC 2 cut(s) 1137, 1228
SfaNI GCATC 1 cut(s) 620
SfcI CTRYAG 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 1 cut(s) 177
SmiMI CAYNNNNRTG 2 cut(s) 777, 1013
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 6 cut(s) 87, 370, 377, 501, 1066, 1178
SsiI CCGC 4 cut(s) 46, 336, 458, 654
SspI AATATT 2 cut(s) 564, 1477
SspMI CTAG 3 cut(s) 702, 1175, 1299
StyD4I CCNGG 2 cut(s) 944, 1327
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 3 cut(s) 187, 598, 1190
TaiI ACGT 5 cut(s) 717, 758, 790, 1134, 1167
TaqI TCGA 4 cut(s) 368, 497, 882, 930
TasI AATT 6 cut(s) 87, 370, 377, 501, 1066, 1178
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 224, 535, 1445
Tru1I TTAA 4 cut(s) 678, 1049, 1208, 1338
Tru9I TTAA 4 cut(s) 678, 1049, 1208, 1338
TscAI CASTG 1 cut(s) 942
TseFI GTSAC 3 cut(s) 491, 710, 1463
TseI GCWGC 4 cut(s) 83, 155, 725, 1376
Tsp45I GTSAC 3 cut(s) 491, 710, 1463
TspDTI ATGAA 6 cut(s) 845, 901, 1089, 1147, 1304, 1485
TspGWI ACGGA 1 cut(s) 967
TspRI CASTG 1 cut(s) 942
VneI GTGCAC 1 cut(s) 1224
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 3 cut(s) 370, 377, 1178
XceI RCATGY 1 cut(s) 874
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 3 cut(s) 702, 1175, 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.