Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002904

Physical Location & Seq

Genomic Coordinates Reverse (-)

32731286 .. 32734879

Gene Structure 3594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG171000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCCGGCTTAGATACTTTCAAAGACCAGCAGGGCTATGAAGAAGAAAAAAACCAAACGATGACAGAAACTTGTACAATGGATGGAGCCGTTGATTGGAATGGCCGCCCTGCAATCCGAGGGAGAACTGGTTCTTGGGTTGCTGCAATTCTCATATTAGTGAATCAAGGATTGGCAACATTGGCATTCTTTGGAGTAGGAGTGAACTTGGTATTGTTCTTGACAAGGGTACTGGAACAAGACAACGCTGAGGCTGCAAACAATGTCAGCAAATGGACCGGAACAGTTTACATGTTCTCTCTTCTTGGGGCTTTTCTTAGTGATTCTTACTGGGGGAGATACAAAACTTGTGCTATCTTTCAAGTTATTTTTGTCATTGGCTTGACATTATTGTCACTAACAACGTACCTATTCCTGCTCAAGCCTAAAGGTTGCGGTGATGAGCAATATCCATGTGGAGACCATTCGAATTTTGAATTCGCAATGTTTTACTTCTCCATATATCTCATTGCACTAGGGAATGGCGGCTACCAACCTAACATAGCTACATTTGGAGCGGACCAGTTTGATGGGGACGACCTCAAAGAAGGTCACTCGAAAATTGCCTTCTTCAGCTATTTCTACTTGGCTTTGAATCTTGGCTCCCTCTTCTCTAACACAATATTAGGGTATTTTGAGGATAAAGGACTATGGACTGTAGGGTTTTGGGCATCTACAGGCTCTGCTGGCATGGCATTGATTTTGTTTCTTTGCGGAACTCCAAGGTATAGGCATTTTAAGCCTCAGGGCAATCCGCTTTCTAGGTTATGTCACGTACTGGTTGCTGCAACAAGAAAATGGAAGGTTAAGATCACGTCAGATGGAGATGACCATTTGTATGAGGAACATGGGAAACAATGCTCTGAAAATCAGAGTAGGAAAATACTTCACACCCGAGGAATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010038 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046686 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

315

Amino Acids

35.13

Weight (kDa)

6.38

Isoelectric Point (pI)

18.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	54 - 265	4.1e-08	Major Facilitator Superfamily
PTR2	PF00854	114 - 288	7.9e-38	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21680
fragaria_vesca	FvH4_7g07900
malus_domestica	MD02G1228800.v1.1 MD07G1082700.v1.1
prunus_persica	Prupe.2G110400_v2.0.a1
pyrus_communis	pycom02g19760 pycom07g06610
rosa_chinensis	RchiOBHm_Chr1g0324671 RchiOBHm_Chr1g0341461 RchiOBHm_Chr1g0341491 RchiOBHm_Chr1g0341501
rosa_laevigata	RLG00000029091 RLG00000029095 RLG00000029096 RLG00000029100
rosa_multiflora	Rmu_sc0003672.1_g000005 Rmu_sc0004903.1_g000009 Rmu_sc0006027.1_g000013 Rmu_sc0014111.1_g000001 Rmu_ssc0000295.1_g000062
rosa_roxburghii	Rroxscaffold_4G00312080 Rroxscaffold_4G00312110 Rroxscaffold_4G00312170
rosa_rugosa	Rorug01G0156400.1 Rorug01G0156500.1
rosa_samantha	Rh1AG171000 Rh1BG139000 Rh1BG139200 Rh1BG139300 Rh1BG139400 Rh1CG159300 Rh1CG159500 Rh1DG171500 Rh1DG171600 Rh1DG171800
rosa_wichuraiana	Rw1G014260 Rw1G014280 Rw1G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	391
AccBSI	CCGCTC	1 cut(s)	557
AciI	CCGC	6 cut(s)	106, 435, 525, 557, 753, 794
AcoI	YGGCCR	2 cut(s)	3, 103
AcsI	RAATTY	2 cut(s)	469, 476
AcuI	CTGAAG	1 cut(s)	595
AfaI	GTAC	4 cut(s)	76, 231, 407, 816
AfiI	CCNNNNNNNGG	1 cut(s)	96
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	4 cut(s)	22, 362, 476, 634
AjiI	CACGTC	1 cut(s)	855
AjuI	GAANNNNNNNTTGG	4 cut(s)	118, 150, 155, 187
AloI	GAACNNNNNNTCC	2 cut(s)	115, 147
AluBI	AGCT	2 cut(s)	545, 615
AluI	AGCT	2 cut(s)	545, 615
Alw26I	GTCTC	1 cut(s)	453
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	933
AoxI	GGCC	2 cut(s)	3, 103
ApeKI	GCWGC	3 cut(s)	143, 254, 824
ApoI	RAATTY	2 cut(s)	469, 476
Asp700I	GAANNNNTTC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	276, 559
AsuHPI	GGTGA	1 cut(s)	449
AsuII	TTCGAA	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	933
AvaII	GGWCC	2 cut(s)	276, 559
AxyI	CCTNAGG	1 cut(s)	783
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	130, 241, 811
BccI	CCATC	3 cut(s)	77, 563, 854
BceAI	ACGGC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	2 cut(s)	515, 801
BfmI	CTRYAG	2 cut(s)	696, 714
BisI	GCNGC	5 cut(s)	106, 144, 255, 526, 825
BlsI	GCNGC	5 cut(s)	107, 145, 256, 527, 826
Bme18I	GGWCC	2 cut(s)	276, 559
BmeT110I	CYCGRG	1 cut(s)	933
BmgBI	CACGTC	1 cut(s)	855
BmgT120I	GGNCC	2 cut(s)	276, 559
BmiI	GGNNCC	2 cut(s)	88, 643
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	1 cut(s)	719
BmuI	ACTGGG	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	814
BsaI	GGTCTC	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	118, 761, 934
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 186, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	5 cut(s)	133, 237, 335, 562, 822
Bse21I	CCTNAGG	1 cut(s)	783
Bse3DI	GCAATG	2 cut(s)	489, 507
BseDI	CCNNGG	3 cut(s)	118, 761, 934
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	2 cut(s)	489, 507
BseMII	CTCAG	2 cut(s)	240, 797
BseNI	ACTGG	5 cut(s)	133, 237, 335, 562, 822
BseXI	GCAGC	3 cut(s)	130, 241, 811
BshFI	GGCC	2 cut(s)	5, 105
BsiHKCI	CYCGRG	1 cut(s)	933
BsiSI	CCGG	2 cut(s)	6, 279
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	587
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	5, 105
Bso31I	GGTCTC	1 cut(s)	453
BsoBI	CYCGRG	1 cut(s)	933
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	849
BspACI	CCGC	6 cut(s)	106, 435, 525, 557, 753, 794
BspANI	GGCC	2 cut(s)	5, 105
BspCNI	CTCAG	2 cut(s)	241, 796
BspLI	GGNNCC	2 cut(s)	88, 643
BspT104I	TTCGAA	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	453
BsrBI	CCGCTC	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	489, 507
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	74
BsrI	ACTGG	5 cut(s)	133, 237, 335, 562, 822
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	118, 761, 934
BssMI	GATC	1 cut(s)	849
BssT1I	CCWWGG	1 cut(s)	761
Bst4CI	ACNGT	2 cut(s)	286, 697
Bst6I	CTCTTC	2 cut(s)	306, 653
BstAUI	TGTACA	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	814
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	7, 727
BstDEI	CTNAG	4 cut(s)	10, 249, 317, 783
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	852
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	1 cut(s)	849
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 254, 726, 731, 778
BstNSI	RCATGY	1 cut(s)	295
BstSFI	CTRYAG	2 cut(s)	696, 714
BstV1I	GCAGC	3 cut(s)	130, 241, 811
BstXI	CCANNNNNNTGG	1 cut(s)	569
Bsu36I	CCTNAGG	1 cut(s)	783
BsuRI	GGCC	2 cut(s)	5, 105
BtrI	CACGTC	1 cut(s)	855
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	7, 727
CaiI	CAGNNNCTG	1 cut(s)	722
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	276, 559
Csp6I	GTAC	4 cut(s)	75, 230, 406, 815
CviAII	CATG	4 cut(s)	292, 453, 730, 887
CviQI	GTAC	4 cut(s)	75, 230, 406, 815
DdeI	CTNAG	4 cut(s)	10, 249, 317, 783
DpnI	GATC	1 cut(s)	851
DpnII	GATC	1 cut(s)	849
DrdI	GACNNNNNNGTC	1 cut(s)	391
DseDI	GACNNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	2 cut(s)	3, 103
Eam1104I	CTCTTC	2 cut(s)	306, 653
EarI	CTCTTC	2 cut(s)	306, 653
Eco130I	CCWWGG	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	276, 559
Eco57I	CTGAAG	1 cut(s)	595
Eco81I	CCTNAGG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	933
EcoRI	GAATTC	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	761
FaeI	CATG	4 cut(s)	295, 456, 733, 890
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	4 cut(s)	291, 452, 729, 886
Fnu4HI	GCNGC	5 cut(s)	106, 144, 255, 526, 825
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	5 cut(s)	106, 144, 255, 526, 825
FspBI	CTAG	2 cut(s)	515, 801
GluI	GCNGC	5 cut(s)	106, 144, 255, 526, 825
HaeIII	GGCC	2 cut(s)	5, 105
HapII	CCGG	2 cut(s)	6, 279
Hin1II	CATG	4 cut(s)	295, 456, 733, 890
HinfI	GANTC	4 cut(s)	163, 323, 634, 939
HpaII	CCGG	2 cut(s)	6, 279
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	205, 289
Hpy188I	TCNGA	4 cut(s)	119, 859, 904, 912
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	2 cut(s)	205, 289
HpyAV	CCTTC	3 cut(s)	581, 616, 835
HpyCH4III	ACNGT	2 cut(s)	286, 697
HpyCH4IV	ACGT	3 cut(s)	404, 813, 854
HpyCH4V	TGCA	5 cut(s)	113, 146, 257, 512, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 254, 726, 731, 778
HpyF3I	CTNAG	4 cut(s)	10, 249, 317, 783
HpySE526I	ACGT	3 cut(s)	404, 813, 854
Hsp92II	CATG	4 cut(s)	295, 456, 733, 890
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	849
LmnI	GCTCC	3 cut(s)	86, 554, 647
Lsp1109I	GCAGC	3 cut(s)	130, 241, 811
LweI	GCATC	1 cut(s)	719
MaeI	CTAG	2 cut(s)	515, 801
MaeII	ACGT	3 cut(s)	404, 813, 854
MaeIII	GTNAC	3 cut(s)	393, 590, 809
MalI	GATC	1 cut(s)	851
MbiI	CCGCTC	1 cut(s)	557
MboI	GATC	1 cut(s)	849
MboII	GAAGA	5 cut(s)	53, 56, 293, 601, 640
MluCI	AATT	4 cut(s)	147, 469, 476, 600
MnlI	CCTC	8 cut(s)	113, 244, 590, 656, 670, 792, 874, 929
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	2 cut(s)	777, 846
MslI	CAYNNNNRTG	2 cut(s)	158, 876
MspI	CCGG	2 cut(s)	6, 279
Mva1269I	GAATGC	1 cut(s)	185
MwoI	GCNNNNNNNGC	5 cut(s)	182, 254, 726, 731, 778
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	1 cut(s)	849
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	295, 456, 733, 890
NlaIV	GGNNCC	2 cut(s)	88, 643
NmuCI	GTSAC	3 cut(s)	393, 590, 809
NspI	RCATGY	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	467
PciI	ACATGT	1 cut(s)	291
PctI	GAATGC	1 cut(s)	185
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	4 cut(s)	163, 323, 634, 939
PkrI	GCNGC	5 cut(s)	107, 145, 256, 527, 826
Ppu21I	YACGTR	1 cut(s)	814
PscI	ACATGT	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	88, 643
PspPI	GGNCC	2 cut(s)	276, 559
PstNI	CAGNNNCTG	1 cut(s)	722
RsaI	GTAC	4 cut(s)	76, 231, 407, 816
RsaNI	GTAC	4 cut(s)	75, 230, 406, 815
RseI	CAYNNNNRTG	2 cut(s)	158, 876
SaqAI	TTAA	2 cut(s)	777, 846
SatI	GCNGC	5 cut(s)	106, 144, 255, 526, 825
Sau3AI	GATC	1 cut(s)	849
Sau96I	GGNCC	2 cut(s)	276, 559
SfaNI	GCATC	1 cut(s)	719
SfcI	CTRYAG	2 cut(s)	696, 714
SfuI	TTCGAA	1 cut(s)	467
SinI	GGWCC	2 cut(s)	276, 559
SmiMI	CAYNNNNRTG	2 cut(s)	158, 876
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	147, 469, 476, 600
SsiI	CCGC	6 cut(s)	106, 435, 525, 557, 753, 794
SspI	AATATT	1 cut(s)	663
SspMI	CTAG	2 cut(s)	515, 801
StyI	CCWWGG	1 cut(s)	761
TaaI	ACNGT	2 cut(s)	286, 697
TaiI	ACGT	3 cut(s)	407, 816, 857
TaqI	TCGA	2 cut(s)	467, 596
TasI	AATT	4 cut(s)	147, 469, 476, 600
TatI	WGTACW	1 cut(s)	74
TauI	GCSGC	2 cut(s)	108, 528
TfiI	GAWTC	4 cut(s)	163, 323, 634, 939
Tru1I	TTAA	2 cut(s)	777, 846
Tru9I	TTAA	2 cut(s)	777, 846
TseFI	GTSAC	3 cut(s)	393, 590, 809
TseI	GCWGC	3 cut(s)	143, 254, 824
Tsp45I	GTSAC	3 cut(s)	393, 590, 809
TspDTI	ATGAA	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	276, 559
XapI	RAATTY	2 cut(s)	469, 476
XceI	RCATGY	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	2 cut(s)	515, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.