Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000295.1

Orthogroup ID

OG0002904

Physical Location & Seq

Genomic Coordinates Reverse (-)

256152 .. 257838

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000295.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

atgttttacatctccatatatctcattgcactagggaatggcggataccaacctaacatagctacatttggagcggaccagtttgatgaggacgaccttaaagaaggtcactcgaaaattgccttcttcagctatttctacttggctttgaatcttggctccctcttctctaacacaatattagggtattttgaggataaaggactatggactgtagggttttgggcatctacaggctctgctggcatggcattgattttgtttctttgcggaactccaaggtataggcattttaagcctcagggcaatccgctttctaggttatgtcacgtactggttgctgcaacaagaaaatggaaggttaagatcacgtcagatggagatgaccatttgtatgaggaacatgggaaacaatgctctgaaaatcagagtaggaaaatacttcacacccgaggaatcaagttcttggatagggcagcaatcgtcacatcagaggagttgaaccaaatagacagatgttctccaaatccatggcggctttgcacagtgacacaagtagaagaagttaaatgcgtactgagattacttccaatttggctatgtacaatactatactcagttgttttcacacaaatggcctccctctttgtagaacaaggtgctgtaatgaaaaccaccatctccaagttccacattcccccagcgagcatgtcaagtttcgacatcctcagcgtggcaacttttatcttcatttaccggcgagttctcgacccactcattgccagggtacggaaaaaaggactcactgagcttcaaagaatggggattggtcttgtcattgccatcatgtctatgatctcagcaggagttgtggagtgttttaggttaaaatatgcaagaacaaattgttccgctaccggttgtgagagttcaagttcgttgagcatattttggcaagttcctcaatatgtgctcgtcggagcttccgaagtgttcatgtacgtgggtcagcttgaattcttcaacagtcaagcacctgatgggttaaagagctttggtagtgcactttgcatgacttcaatatcacttggaaactatgtgagtagtttactggttacgatagtgatgaagttttctagtagggatgatatgagtggatggatccctggaaaccttaacaacggtcatctggaaaggttttactttctcttagcagctttgactactgctgatctcatggtctatatagtttgtgccaagtggtacaagtatatcaagtttgaagcaaagggaggagatgaccgcaatgaaaatattaggcaagctgaacttagagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010038 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046686 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

446

Amino Acids

50.12

Weight (kDa)

8.61

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21680
fragaria_vesca	FvH4_7g07900
malus_domestica	MD02G1228800.v1.1 MD07G1082700.v1.1
prunus_persica	Prupe.2G110400_v2.0.a1
pyrus_communis	pycom02g19760 pycom07g06610
rosa_chinensis	RchiOBHm_Chr1g0324671 RchiOBHm_Chr1g0341461 RchiOBHm_Chr1g0341491 RchiOBHm_Chr1g0341501
rosa_laevigata	RLG00000029091 RLG00000029095 RLG00000029096 RLG00000029100
rosa_multiflora	Rmu_sc0003672.1_g000005 Rmu_sc0004903.1_g000009 Rmu_sc0006027.1_g000013 Rmu_sc0014111.1_g000001 Rmu_ssc0000295.1_g000062
rosa_roxburghii	Rroxscaffold_4G00312080 Rroxscaffold_4G00312110 Rroxscaffold_4G00312170
rosa_rugosa	Rorug01G0156400.1 Rorug01G0156500.1
rosa_samantha	Rh1AG171000 Rh1BG139000 Rh1BG139200 Rh1BG139300 Rh1BG139400 Rh1CG159300 Rh1CG159500 Rh1DG171500 Rh1DG171600 Rh1DG171800
rosa_wichuraiana	Rw1G014260 Rw1G014280 Rw1G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	74
AciI	CCGC	7 cut(s)	42, 74, 270, 311, 535, 912, 1303
AclWI	GGATC	2 cut(s)	1156, 1169
AcsI	RAATTY	1 cut(s)	1016
AcuI	CTGAAG	1 cut(s)	112
AfaI	GTAC	6 cut(s)	333, 576, 604, 789, 1001, 1265
AfiI	CCNNNNNNNGG	2 cut(s)	733, 789
AgeI	ACCGGT	1 cut(s)	917
AgsI	TTSAA	8 cut(s)	151, 502, 815, 933, 1016, 1024, 1080, 1283
AjiI	CACGTC	1 cut(s)	372
AjnI	CCWGG	2 cut(s)	782, 1165
AluBI	AGCT	8 cut(s)	62, 132, 811, 983, 1012, 1053, 1217, 1325
AluI	AGCT	8 cut(s)	62, 132, 811, 983, 1012, 1053, 1217, 1325
Alw21I	GWGCWC	2 cut(s)	975, 1066
Alw44I	GTGCAC	1 cut(s)	1062
AlwI	GGATC	2 cut(s)	1156, 1169
AlwNI	CAGNNNCTG	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	1 cut(s)	636
ApaLI	GTGCAC	1 cut(s)	1062
ApeKI	GCWGC	3 cut(s)	341, 476, 1214
ApoI	RAATTY	1 cut(s)	1016
AsiGI	ACCGGT	1 cut(s)	917
AspS9I	GGNCC	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	1066
BamHI	GGATCC	1 cut(s)	1161
Bbv12I	GWGCWC	2 cut(s)	975, 1066
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	3 cut(s)	328, 488, 1226
BccI	CCATC	5 cut(s)	371, 686, 851, 1034, 1152
BciT130I	CCWGG	2 cut(s)	784, 1167
BciVI	GTATCC	1 cut(s)	38
BfaI	CTAG	3 cut(s)	32, 318, 1137
BfmI	CTRYAG	2 cut(s)	213, 231
BfuI	GTATCC	1 cut(s)	38
BisI	GCNGC	4 cut(s)	342, 477, 536, 1215
BlsI	GCNGC	4 cut(s)	343, 478, 537, 1216
Bme1390I	CCNGG	2 cut(s)	784, 1167
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	450
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	160, 1163
BmrFI	CCNGG	2 cut(s)	784, 1167
BmsI	GCATC	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	728
BsaAI	YACGTR	2 cut(s)	331, 1003
BsaJI	CCNNGG	5 cut(s)	278, 451, 530, 783, 1165
BsaWI	WCCGGW	1 cut(s)	917
Bsc4I	CCNNNNNNNGG	2 cut(s)	733, 789
Bse118I	RCCGGY	2 cut(s)	756, 917
Bse1I	ACTGG	3 cut(s)	79, 339, 1116
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	4 cut(s)	24, 777, 837, 1312
BseBI	CCWGG	2 cut(s)	784, 1167
BseDI	CCNNGG	5 cut(s)	278, 451, 530, 783, 1165
BseGI	GGATG	3 cut(s)	723, 1150, 1163
BseLI	CCNNNNNNNGG	2 cut(s)	733, 789
BseMI	GCAATG	4 cut(s)	24, 777, 837, 1312
BseMII	CTCAG	6 cut(s)	314, 569, 630, 742, 798, 873
BseNI	ACTGG	3 cut(s)	79, 339, 1116
BseRI	GAGGAG	2 cut(s)	509, 1308
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	3 cut(s)	328, 488, 1226
BseYI	CCCAGC	1 cut(s)	700
BshFI	GGCC	1 cut(s)	638
BshTI	ACCGGT	1 cut(s)	917
BsiHKAI	GWGCWC	2 cut(s)	975, 1066
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	757, 918
BslI	CCNNNNNNNGG	2 cut(s)	733, 789
BsnI	GGCC	1 cut(s)	638
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	975, 1066
Bsp1407I	TGTACA	1 cut(s)	602
Bsp143I	GATC	4 cut(s)	366, 855, 1161, 1231
Bsp19I	CCATGG	1 cut(s)	530
BspACI	CCGC	7 cut(s)	42, 74, 270, 311, 535, 912, 1303
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	6 cut(s)	313, 570, 629, 741, 799, 872
BspLI	GGNNCC	2 cut(s)	160, 1163
BspPI	GGATC	2 cut(s)	1156, 1169
BsrBI	CCGCTC	1 cut(s)	74
BsrDI	GCAATG	4 cut(s)	24, 777, 837, 1312
BsrFI	RCCGGY	2 cut(s)	756, 917
BsrGI	TGTACA	1 cut(s)	602
BsrI	ACTGG	3 cut(s)	79, 339, 1116
BssAI	RCCGGY	2 cut(s)	756, 917
BssECI	CCNNGG	5 cut(s)	278, 451, 530, 783, 1165
BssMI	GATC	4 cut(s)	366, 855, 1161, 1231
BssT1I	CCWWGG	2 cut(s)	278, 530
Bst2UI	CCWGG	2 cut(s)	784, 1167
Bst4CI	ACNGT	4 cut(s)	214, 547, 1028, 1184
Bst6I	CTCTTC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	602
BstBAI	YACGTR	2 cut(s)	331, 1003
BstC8I	GCNNGC	3 cut(s)	244, 706, 1323
BstDEI	CTNAG	8 cut(s)	300, 578, 616, 728, 807, 859, 1210, 1331
BstDSI	CCRYGG	1 cut(s)	530
BstF5I	GGATG	3 cut(s)	723, 1150, 1163
BstKTI	GATC	4 cut(s)	369, 858, 1164, 1234
BstMBI	GATC	4 cut(s)	366, 855, 1161, 1231
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 248, 295
BstNI	CCWGG	2 cut(s)	784, 1167
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	2 cut(s)	782, 1165
BstSFI	CTRYAG	2 cut(s)	213, 231
BstSLI	GKGCMC	1 cut(s)	1066
BstV1I	GCAGC	3 cut(s)	328, 488, 1226
BstX2I	RGATCY	1 cut(s)	1161
BstXI	CCANNNNNNTGG	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	1161
Bsu36I	CCTNAGG	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	638
BtgI	CCRYGG	1 cut(s)	530
BtrI	CACGTC	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	723, 1150, 1163
BtsIMutI	CAGTG	2 cut(s)	552, 804
Cac8I	GCNNGC	3 cut(s)	244, 706, 1323
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr10I	RCCGGY	2 cut(s)	756, 917
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	6 cut(s)	332, 575, 603, 788, 1000, 1264
CspAI	ACCGGT	1 cut(s)	917
CviAII	CATG	8 cut(s)	247, 404, 531, 709, 847, 997, 1072, 1237
CviQI	GTAC	6 cut(s)	332, 575, 603, 788, 1000, 1264
DdeI	CTNAG	8 cut(s)	300, 578, 616, 728, 807, 859, 1210, 1331
DpnI	GATC	4 cut(s)	368, 857, 1163, 1233
DpnII	GATC	4 cut(s)	366, 855, 1161, 1231
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	278, 530
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	112
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	1016
EcoRII	CCWGG	2 cut(s)	782, 1165
EcoT14I	CCWWGG	2 cut(s)	278, 530
ErhI	CCWWGG	2 cut(s)	278, 530
FaeI	CATG	8 cut(s)	250, 407, 534, 712, 850, 1000, 1075, 1240
FalI	AAGNNNNNCTT	1 cut(s)	1314
FatI	CATG	8 cut(s)	246, 403, 530, 708, 846, 996, 1071, 1236
Fnu4HI	GCNGC	4 cut(s)	342, 477, 536, 1215
FokI	GGATG	3 cut(s)	710, 1157, 1170
Fsp4HI	GCNGC	4 cut(s)	342, 477, 536, 1215
FspBI	CTAG	3 cut(s)	32, 318, 1137
GluI	GCNGC	4 cut(s)	342, 477, 536, 1215
GsaI	CCCAGC	1 cut(s)	704
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	2 cut(s)	757, 918
Hin1II	CATG	8 cut(s)	250, 407, 534, 712, 850, 1000, 1075, 1240
HinfI	GANTC	4 cut(s)	151, 456, 801, 1335
HpaII	CCGG	2 cut(s)	757, 918
Hpy166II	GTNNAC	2 cut(s)	1064, 1109
Hpy188I	TCNGA	7 cut(s)	376, 421, 429, 493, 980, 988, 1340
Hpy188III	TCNNGA	2 cut(s)	767, 1190
Hpy8I	GTNNAC	2 cut(s)	1064, 1109
Hpy99I	CGWCG	1 cut(s)	980
HpyAV	CCTTC	3 cut(s)	98, 133, 352
HpyCH4III	ACNGT	4 cut(s)	214, 547, 1028, 1184
HpyCH4IV	ACGT	3 cut(s)	330, 371, 1002
HpyCH4V	TGCA	6 cut(s)	29, 344, 543, 896, 1064, 1071
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 248, 295
HpyF3I	CTNAG	8 cut(s)	300, 578, 616, 728, 807, 859, 1210, 1331
HpySE526I	ACGT	3 cut(s)	330, 371, 1002
Hsp92II	CATG	8 cut(s)	250, 407, 534, 712, 850, 1000, 1075, 1240
Kzo9I	GATC	4 cut(s)	366, 855, 1161, 1231
LmnI	GCTCC	3 cut(s)	71, 164, 980
Lsp1109I	GCAGC	3 cut(s)	328, 488, 1226
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	3 cut(s)	32, 318, 1137
MaeII	ACGT	3 cut(s)	330, 371, 1002
MaeIII	GTNAC	5 cut(s)	107, 326, 484, 547, 1114
MalI	GATC	4 cut(s)	368, 857, 1163, 1233
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	4 cut(s)	366, 855, 1161, 1231
MboII	GAAGA	5 cut(s)	118, 157, 572, 739, 1012
MflI	RGATCY	1 cut(s)	1161
MhlI	GDGCHC	2 cut(s)	975, 1066
MluCI	AATT	4 cut(s)	117, 591, 904, 1016
MlyI	GAGTC	1 cut(s)	795
MmeI	TCCRAC	1 cut(s)	958
MseI	TTAA	7 cut(s)	99, 294, 363, 567, 887, 1046, 1176
MslI	CAYNNNNRTG	4 cut(s)	393, 632, 851, 1001
MspI	CCGG	2 cut(s)	757, 918
MspR9I	CCNGG	2 cut(s)	784, 1167
MvaI	CCWGG	2 cut(s)	784, 1167
MwoI	GCNNNNNNNGC	3 cut(s)	243, 248, 295
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	4 cut(s)	366, 855, 1161, 1231
NlaIII	CATG	8 cut(s)	250, 407, 534, 712, 850, 1000, 1075, 1240
NlaIV	GGNNCC	2 cut(s)	160, 1163
NmuCI	GTSAC	4 cut(s)	107, 326, 484, 547
NspI	RCATGY	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	984
PfeI	GAWTC	2 cut(s)	151, 456
PinAI	ACCGGT	1 cut(s)	917
PkrI	GCNGC	4 cut(s)	343, 478, 537, 1216
PleI	GAGTC	1 cut(s)	795
PpsI	GAGTC	1 cut(s)	795
Ppu21I	YACGTR	2 cut(s)	331, 1003
Psp6I	CCWGG	2 cut(s)	782, 1165
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	2 cut(s)	782, 1165
PspN4I	GGNNCC	2 cut(s)	160, 1163
PspPI	GGNCC	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	1161
RsaI	GTAC	6 cut(s)	333, 576, 604, 789, 1001, 1265
RsaNI	GTAC	6 cut(s)	332, 575, 603, 788, 1000, 1264
RseI	CAYNNNNRTG	4 cut(s)	393, 632, 851, 1001
SaqAI	TTAA	7 cut(s)	99, 294, 363, 567, 887, 1046, 1176
SatI	GCNGC	4 cut(s)	342, 477, 536, 1215
Sau3AI	GATC	4 cut(s)	366, 855, 1161, 1231
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	795
ScrFI	CCNGG	2 cut(s)	784, 1167
SduI	GDGCHC	2 cut(s)	975, 1066
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	2 cut(s)	213, 231
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	4 cut(s)	393, 632, 851, 1001
Sse9I	AATT	4 cut(s)	117, 591, 904, 1016
SsiI	CCGC	7 cut(s)	42, 74, 270, 311, 535, 912, 1303
SspI	AATATT	2 cut(s)	180, 1315
SspMI	CTAG	3 cut(s)	32, 318, 1137
StyD4I	CCNGG	2 cut(s)	782, 1165
StyI	CCWWGG	2 cut(s)	278, 530
TaaI	ACNGT	4 cut(s)	214, 547, 1028, 1184
TaiI	ACGT	3 cut(s)	333, 374, 1005
TaqI	TCGA	3 cut(s)	113, 720, 768
TasI	AATT	4 cut(s)	117, 591, 904, 1016
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	2 cut(s)	151, 456
Tru1I	TTAA	7 cut(s)	99, 294, 363, 567, 887, 1046, 1176
Tru9I	TTAA	7 cut(s)	99, 294, 363, 567, 887, 1046, 1176
TscAI	CASTG	2 cut(s)	552, 811
TseFI	GTSAC	4 cut(s)	107, 326, 484, 547
TseI	GCWGC	3 cut(s)	341, 476, 1214
Tsp45I	GTSAC	4 cut(s)	107, 326, 484, 547
TspDTI	ATGAA	5 cut(s)	683, 739, 985, 1142, 1323
TspGWI	ACGGA	1 cut(s)	805
TspRI	CASTG	2 cut(s)	552, 811
VneI	GTGCAC	1 cut(s)	1062
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	1016
XceI	RCATGY	1 cut(s)	712
XspI	CTAG	3 cut(s)	32, 318, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.