Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006723

Physical Location & Seq

Genomic Coordinates Reverse (-)

8559116 .. 8561891

Gene Structure 2776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08740.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCCAGATAGCCAAGAAGCAATCCCATCCAAAAATGAAATTGTGATGGACCCAACACTATTGATTAAACTTGGCCGCTGGCAATGGTGGTTTTTGGTGGCAATCAACATATTCTTCCTCCTTGTGGGGCAGGCTGCTGCTGTGTTACTCGGAAGATTTTATTATGACCAGGGTGGTAACAGTAAGTGGATGGCTACTCTTGTGCAAACCGCAGCTTTTCCGGTTCTAGTTATCCCACTTTATTTTCTTCCATCACAAAAAGATCAATCAACTTCTTCAACTTCATCTTCCCCTAAAGTTCTTGCATTGATTTACTTCTTTCTTGGACTGGTCATTGCTGGTGACAACTGGTTGTATTCAACTGGACTCTTGTACCTATCTGCCTCTACATACTCCATCATTTCTTCAACTCAATTAGCTTTCAATGCAGTCTTCTCGTACTTCATCAATTCTCAGAAGTTCAGTGCATTGATTTTCAATTCAGTGATTGTCCTGTCATTGTCCGTGGCTCTTATTGGTGTGAACGACGACTCTGATGGACCTGCAGGGGTATCAACGCAGAAACATATAATTGGCTTTATATGTACCCTTGCTGCTTCTGCAATTTACTCCCTTCTACTTTCCCTCATGCAACTTACTTTCCAGAAGGTTCTGAAAAAGGAAACTTTCTCTGTGGTTTTGCAAATGCAAATTTTCACAGCACTTGTTGCAAGTTGTGCTTCACTTGTGGGTCTTTTTGCCAGTGGGGAATGGAAGACTTTACATGGAGAAATGGAAAGTTTTGGCAAGGGAAGAGTTTCATATGTGATGACTTTGGTGGGGACAGCTGTTTCTTGGCAAGTTTGTTCTGTTGGTGTGGTGGGTTTAATTTTTGTGGTGTCTTCCCTATTCTCAAACGTAATTAGTACTCTTTCATTGGCTGTTACTCCTATAGCTGCTGTGATAGCTTTCCATGACAAGATGAATGGTGTGAAGGTAATCGCTATGCTAATGGCTATCTGGGGTTCTGCTTCTTACATTTATCAAAACTACCTTGATGATGCAAAGGCAAGAAGAGCAGTGGCTGATGTTAGTGAATCACACACTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

364

Amino Acids

39.36

Weight (kDa)

7.67

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	32 - 348	1.5e-129	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44750 AT1G44750 AT1G44750
fragaria_vesca	FvH4_7g08740 FvH4_7g08740 FvH4_7g08740 FvH4_7g08740
malus_domestica	MD07G1088200.v1.1
prunus_persica	Prupe.2G115100_v2.0.a1 Prupe.2G115100_v2.0.a1
pyrus_communis	pycom02g19390 pycom02g19400 pycom07g07080 pycom11g02920
rosa_chinensis	RchiOBHm_Chr1g0343971
rosa_laevigata	RLG00000028938
rosa_multiflora	Rmu_ssc0000434.1_g000033
rosa_roxburghii	Rroxscaffold_4G00310190
rosa_rugosa	Rorug01G0170200 Rorug01G0170300 Rorug01G0170400
rosa_samantha	Rh1AG186800 Rh1BG153200 Rh1CG172300 Rh1DG185500
rosa_wichuraiana	Rw1G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AciI	CCGC	2 cut(s)	76, 210
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	690
AdeI	CACNNNGTG	1 cut(s)	1089
AfaI	GTAC	4 cut(s)	374, 440, 586, 907
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	5 cut(s)	279, 360, 408, 424, 478
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	5 cut(s)	215, 419, 827, 935, 947
AluI	AGCT	5 cut(s)	215, 419, 827, 935, 947
AlwNI	CAGNNNCTG	1 cut(s)	1064
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	5 cut(s)	134, 137, 212, 593, 935
ApoI	RAATTY	1 cut(s)	690
Asp700I	GAANNNNTTC	1 cut(s)	796
AspS9I	GGNCC	2 cut(s)	49, 539
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	2 cut(s)	49, 539
BaeI	ACNNNNGTAYC	2 cut(s)	356, 389
BbsI	GAAGAC	3 cut(s)	424, 761, 873
BbvI	GCAGC	5 cut(s)	121, 124, 224, 580, 922
BccI	CCATC	6 cut(s)	34, 40, 184, 259, 404, 530
BcgI	CGANNNNNNTGC	2 cut(s)	417, 451
BciT130I	CCWGG	1 cut(s)	170
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	543, 930
BfuAI	ACCTGC	1 cut(s)	550
BisI	GCNGC	6 cut(s)	76, 135, 138, 213, 594, 936
BlsI	GCNGC	6 cut(s)	77, 136, 139, 214, 595, 937
BmcAI	AGTACT	1 cut(s)	907
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	2 cut(s)	49, 539
BmgT120I	GGNCC	2 cut(s)	49, 539
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	1030
BpiI	GAAGAC	3 cut(s)	424, 761, 873
BsaJI	CCNNGG	2 cut(s)	169, 504
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	4 cut(s)	333, 353, 367, 741
Bse3DI	GCAATG	2 cut(s)	89, 333
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	169, 504
BseGI	GGATG	2 cut(s)	26, 195
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	2 cut(s)	89, 333
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	4 cut(s)	333, 353, 367, 741
BseXI	GCAGC	5 cut(s)	121, 124, 224, 580, 922
BshFI	GGCC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	835
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	2 cut(s)	76, 210
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	550
BspQI	GCTCTTC	1 cut(s)	1048
BsrDI	GCAATG	2 cut(s)	89, 333
BsrI	ACTGG	4 cut(s)	333, 353, 367, 741
BssECI	CCNNGG	2 cut(s)	169, 504
BssMI	GATC	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	2 cut(s)	787, 1048
BstAPI	GCANNNNNTGC	2 cut(s)	707, 716
BstC8I	GCNNGC	2 cut(s)	80, 132
BstDEI	CTNAG	1 cut(s)	453
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	26, 195
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	6 cut(s)	425, 599, 707, 716, 944, 1055
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	2 cut(s)	543, 930
BstV1I	GCAGC	5 cut(s)	121, 124, 224, 580, 922
BstV2I	GAAGAC	3 cut(s)	424, 761, 873
BsuRI	GGCC	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	26, 195
BtsI	GCAGTG	2 cut(s)	1065, 1083
BtsIMutI	CAGTG	5 cut(s)	469, 489, 748, 1065, 1083
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	2 cut(s)	80, 132
CaiI	CAGNNNCTG	1 cut(s)	1064
Cfr13I	GGNCC	2 cut(s)	49, 539
Csp6I	GTAC	4 cut(s)	373, 439, 585, 906
CviAII	CATG	3 cut(s)	628, 764, 953
CviQI	GTAC	4 cut(s)	373, 439, 585, 906
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DraIII	CACNNNGTG	1 cut(s)	1089
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	787, 1048
EarI	CTCTTC	2 cut(s)	787, 1048
Eco47I	GGWCC	2 cut(s)	49, 539
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	631, 767, 956
FalI	AAGNNNNNCTT	2 cut(s)	703, 735
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	3 cut(s)	627, 763, 952
FauNDI	CATATG	1 cut(s)	802
Fnu4HI	GCNGC	6 cut(s)	76, 135, 138, 213, 594, 936
FokI	GGATG	2 cut(s)	13, 202
Fsp4HI	GCNGC	6 cut(s)	76, 135, 138, 213, 594, 936
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	6 cut(s)	76, 135, 138, 213, 594, 936
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	3 cut(s)	631, 767, 956
HinfI	GANTC	3 cut(s)	366, 530, 1076
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	4 cut(s)	152, 456, 535, 654
Hpy188III	TCNNGA	1 cut(s)	643
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	3 cut(s)	623, 640, 967
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	897
HpyF10VI	GCNNNNNNNGC	6 cut(s)	425, 599, 707, 716, 944, 1055
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	897
Hsp92II	CATG	3 cut(s)	631, 767, 956
Kzo9I	GATC	1 cut(s)	262
LguI	GCTCTTC	1 cut(s)	1048
Lsp1109I	GCAGC	5 cut(s)	121, 124, 224, 580, 922
LweI	GCATC	1 cut(s)	1030
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	897
MaeIII	GTNAC	4 cut(s)	144, 176, 341, 922
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MluCI	AATT	9 cut(s)	39, 413, 448, 478, 570, 603, 690, 867, 900
MlyI	GAGTC	2 cut(s)	360, 524
MnlI	CCTC	3 cut(s)	128, 394, 635
MroXI	GAANNNNTTC	1 cut(s)	796
MseI	TTAA	2 cut(s)	66, 866
MspA1I	CMGCKG	2 cut(s)	78, 827
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	6 cut(s)	425, 599, 707, 716, 944, 1055
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	3 cut(s)	631, 767, 956
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	1048
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	1 cut(s)	1076
PkrI	GCNGC	6 cut(s)	77, 136, 139, 214, 595, 937
PleI	GAGTC	2 cut(s)	360, 524
PpsI	GAGTC	2 cut(s)	360, 524
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	49, 539
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	1064
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	4 cut(s)	374, 440, 586, 907
RsaNI	GTAC	4 cut(s)	373, 439, 585, 906
SapI	GCTCTTC	1 cut(s)	1048
SaqAI	TTAA	2 cut(s)	66, 866
SatI	GCNGC	6 cut(s)	76, 135, 138, 213, 594, 936
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	2 cut(s)	49, 539
SbfI	CCTGCAGG	1 cut(s)	547
ScaI	AGTACT	1 cut(s)	907
SchI	GAGTC	2 cut(s)	360, 524
ScrFI	CCNGG	1 cut(s)	170
SdaI	CCTGCAGG	1 cut(s)	547
SfaNI	GCATC	1 cut(s)	1030
SfcI	CTRYAG	2 cut(s)	543, 930
SinI	GGWCC	2 cut(s)	49, 539
Sse8387I	CCTGCAGG	1 cut(s)	547
Sse9I	AATT	9 cut(s)	39, 413, 448, 478, 570, 603, 690, 867, 900
SsiI	CCGC	2 cut(s)	76, 210
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	900
TasI	AATT	9 cut(s)	39, 413, 448, 478, 570, 603, 690, 867, 900
TatI	WGTACW	1 cut(s)	905
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	1076
Tru1I	TTAA	2 cut(s)	66, 866
Tru9I	TTAA	2 cut(s)	66, 866
TscAI	CASTG	5 cut(s)	469, 489, 748, 1065, 1090
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	5 cut(s)	134, 137, 212, 593, 935
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	6 cut(s)	51, 273, 433, 789, 903, 977
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	5 cut(s)	469, 489, 748, 1065, 1090
VpaK11BI	GGWCC	2 cut(s)	49, 539
XapI	RAATTY	1 cut(s)	690
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	1 cut(s)	227
ZrmI	AGTACT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.