Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006723

Physical Location & Seq

Genomic Coordinates Forward (+)

17227522 .. 17228361

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGACGATAATATTTTCCTCAAAAAAAAAAAAAAAAAAAATGAAGATTTGGTTATATAATGGACCATACCATTATTACGTGTCACATAGCATCTTCAATATCCATACTATAATAAGTTGTTATAGTCATTCAATACTAGAGTCTGGTGGCATTCATTTTTACTTGGAAGTGAGAGGTTTTAGGTTCGAATCTCGTGGTTGCGAATTTGATACCAAATTAGGTTGTCCATTATGTGACTTAGCCAAACTCTCACTCCTCTTCGTTAAAAATATCAATGTATTAGCCAAACTCTCACTCCTCTTCATCCACAAATACTATAATTGGGCCAACAGAAGGCTAGCAAGAAGCCAGGATCCAGAACGTGACCAAAATTTCCGCCTAATTCCAAATCATTACGGTCCCTCCGCCGTGCCAGTCATAGATTGGTCTGGTGGATTCACGAACACGCGATACACTTGTACTTCTTCTCTAACTCCTCAGTCCTCCAAATCTCTGTGTCTTCTGCTTTTCTCTTGGCCGCGCAGATATTTCATGGATTTACACGCGGCAGATTCTGATTGGTGGACGGGTATGTGGAAACGCACGATTCTATTTTTCGCCACCGTTTTCGAAACAAGTCTAAACTCAAATGATCAAATCCTTGAAGAAGGCCTAAACAGCAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.92

Weight (kDa)

9.36

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44750 AT1G44750 AT1G44750
fragaria_vesca	FvH4_7g08740 FvH4_7g08740 FvH4_7g08740 FvH4_7g08740
malus_domestica	MD07G1088200.v1.1
prunus_persica	Prupe.2G115100_v2.0.a1 Prupe.2G115100_v2.0.a1
pyrus_communis	pycom02g19390 pycom02g19400 pycom07g07080 pycom11g02920
rosa_chinensis	RchiOBHm_Chr1g0343971
rosa_laevigata	RLG00000028938
rosa_multiflora	Rmu_ssc0000434.1_g000033
rosa_roxburghii	Rroxscaffold_4G00310190
rosa_rugosa	Rorug01G0170200 Rorug01G0170300 Rorug01G0170400
rosa_samantha	Rh1AG186800 Rh1BG153200 Rh1CG172300 Rh1DG185500
rosa_wichuraiana	Rw1G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	448, 520, 545
AciI	CCGC	4 cut(s)	376, 405, 518, 545
AclWI	GGATC	2 cut(s)	347, 360
AcoI	YGGCCR	1 cut(s)	515
AcsI	RAATTY	3 cut(s)	203, 370, 663
AfaI	GTAC	1 cut(s)	460
AfiI	CCNNNNNNNGG	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	97, 132, 644
AjnI	CCWGG	1 cut(s)	348
AlwI	GGATC	2 cut(s)	347, 360
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	3 cut(s)	324, 515, 649
ApoI	RAATTY	3 cut(s)	203, 370, 663
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	3 cut(s)	62, 324, 398
AsuII	TTCGAA	2 cut(s)	186, 609
AsuNHI	GCTAGC	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	62, 398
BaeI	ACNNNNGTAYC	2 cut(s)	442, 475
BamHI	GGATCC	1 cut(s)	352
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	631
BfaI	CTAG	2 cut(s)	137, 338
BisI	GCNGC	2 cut(s)	518, 546
BlsI	GCNGC	2 cut(s)	519, 547
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	62, 398
BmgT120I	GGNCC	3 cut(s)	62, 324, 398
BmiI	GGNNCC	2 cut(s)	354, 400
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	99
BmtI	GCTAGC	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	491
Bpu14I	TTCGAA	2 cut(s)	186, 609
BsaAI	YACGTR	1 cut(s)	79
BsaXI	ACNNNNNCTCC	6 cut(s)	237, 267, 279, 309, 386, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	3 cut(s)	245, 287, 465
Bsh1236I	CGCG	3 cut(s)	448, 520, 545
BshFI	GGCC	3 cut(s)	326, 517, 651
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	3 cut(s)	326, 517, 651
Bsp119I	TTCGAA	2 cut(s)	186, 609
Bsp143I	GATC	2 cut(s)	352, 631
BspACI	CCGC	4 cut(s)	376, 405, 518, 545
BspANI	GGCC	3 cut(s)	326, 517, 651
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	3 cut(s)	448, 520, 545
BspLI	GGNNCC	2 cut(s)	354, 400
BspOI	GCTAGC	1 cut(s)	341
BspPI	GGATC	2 cut(s)	347, 360
BspT104I	TTCGAA	2 cut(s)	186, 609
BsrI	ACTGG	1 cut(s)	413
BssMI	GATC	2 cut(s)	352, 631
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	398, 604
Bst6I	CTCTTC	2 cut(s)	263, 305
BstBAI	YACGTR	1 cut(s)	79
BstBI	TTCGAA	2 cut(s)	186, 609
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	238, 477
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	3 cut(s)	448, 520, 545
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	2 cut(s)	355, 634
BstMBI	GATC	2 cut(s)	352, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	657
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstUI	CGCG	3 cut(s)	448, 520, 545
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	326, 517, 651
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	339
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	1 cut(s)	522
Cfr13I	GGNCC	3 cut(s)	62, 324, 398
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	1 cut(s)	532
CviJI	RGCY	7 cut(s)	242, 284, 326, 337, 348, 517, 651
CviKI_1	RGCY	7 cut(s)	242, 284, 326, 337, 348, 517, 651
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	2 cut(s)	238, 477
DpnI	GATC	2 cut(s)	354, 633
DpnII	GATC	2 cut(s)	352, 631
EaeI	YGGCCR	1 cut(s)	515
Eam1104I	CTCTTC	2 cut(s)	263, 305
EarI	CTCTTC	2 cut(s)	263, 305
EciI	GGCGGA	2 cut(s)	365, 394
Eco147I	AGGCCT	1 cut(s)	651
Eco47I	GGWCC	2 cut(s)	62, 398
EcoRII	CCWGG	1 cut(s)	348
FaeI	CATG	1 cut(s)	535
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	518, 546
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	518, 546
FspBI	CTAG	2 cut(s)	137, 338
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	2 cut(s)	518, 546
HaeIII	GGCC	3 cut(s)	326, 517, 651
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	1 cut(s)	535
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HinfI	GANTC	5 cut(s)	140, 188, 435, 551, 586
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	2 cut(s)	356, 439
Hpy8I	GTNNAC	1 cut(s)	564
HpyAV	CCTTC	2 cut(s)	327, 641
HpyCH4III	ACNGT	2 cut(s)	398, 604
HpyCH4IV	ACGT	2 cut(s)	78, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	657
HpyF3I	CTNAG	2 cut(s)	238, 477
HpySE526I	ACGT	2 cut(s)	78, 361
Hsp92II	CATG	1 cut(s)	535
HspAI	GCGC	1 cut(s)	520
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	2 cut(s)	352, 631
LpnPI	CCDG	6 cut(s)	129, 335, 362, 369, 414, 426
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	2 cut(s)	137, 338
MaeII	ACGT	2 cut(s)	78, 361
MaeIII	GTNAC	3 cut(s)	81, 233, 362
MalI	GATC	2 cut(s)	354, 633
MboI	GATC	2 cut(s)	352, 631
MboII	GAAGA	7 cut(s)	55, 85, 250, 292, 456, 491, 656
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	6 cut(s)	203, 215, 319, 370, 381, 663
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	7 cut(s)	28, 167, 266, 308, 412, 486, 493
MseI	TTAA	2 cut(s)	264, 667
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	3 cut(s)	448, 520, 545
MwoI	GCNNNNNNNGC	1 cut(s)	657
NdeII	GATC	2 cut(s)	352, 631
NheI	GCTAGC	1 cut(s)	337
NlaIII	CATG	1 cut(s)	535
NlaIV	GGNNCC	2 cut(s)	354, 400
NmuCI	GTSAC	3 cut(s)	81, 233, 362
NspV	TTCGAA	2 cut(s)	186, 609
PceI	AGGCCT	1 cut(s)	651
PctI	GAATGC	1 cut(s)	150
PfeI	GAWTC	4 cut(s)	188, 435, 551, 586
PkrI	GCNGC	2 cut(s)	519, 547
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Ppu21I	YACGTR	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	354, 400
PspPI	GGNCC	3 cut(s)	62, 324, 398
PsrI	GAACNNNNNNTAC	2 cut(s)	434, 466
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	264, 667
SatI	GCNGC	2 cut(s)	518, 546
Sau3AI	GATC	2 cut(s)	352, 631
Sau96I	GGNCC	3 cut(s)	62, 324, 398
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	5 cut(s)	81, 178, 185, 223, 364
SfaNI	GCATC	1 cut(s)	99
SfuI	TTCGAA	2 cut(s)	186, 609
SinI	GGWCC	2 cut(s)	62, 398
Sse9I	AATT	6 cut(s)	203, 215, 319, 370, 381, 663
SseBI	AGGCCT	1 cut(s)	651
SsiI	CCGC	4 cut(s)	376, 405, 518, 545
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	2 cut(s)	137, 338
StuI	AGGCCT	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	398, 604
TaiI	ACGT	2 cut(s)	81, 364
TaqI	TCGA	2 cut(s)	186, 609
TasI	AATT	6 cut(s)	203, 215, 319, 370, 381, 663
TatI	WGTACW	1 cut(s)	458
TauI	GCSGC	2 cut(s)	520, 548
TfiI	GAWTC	4 cut(s)	188, 435, 551, 586
Tru1I	TTAA	2 cut(s)	264, 667
Tru9I	TTAA	2 cut(s)	264, 667
TseFI	GTSAC	3 cut(s)	81, 233, 362
Tsp45I	GTSAC	3 cut(s)	81, 233, 362
TspDTI	ATGAA	4 cut(s)	56, 143, 292, 520
VpaK11BI	GGWCC	2 cut(s)	62, 398
XapI	RAATTY	3 cut(s)	203, 370, 663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	420
XspI	CTAG	2 cut(s)	137, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.