Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006723

Physical Location & Seq

Genomic Coordinates Forward (+)

32099885 .. 32102789

Gene Structure 2905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTCGATTCTTGGGTCCTCTGCCTCCTCACTTTTCTCCGGAGTTTCTAGTTTTGTGTTCCCCCGAACATTTCTGATGGACCTCCACGCGGACGGATCCTACTCGCTGATAGATAGCCAAGAAGCCATCCCATTCAAAAATGAAACAGTGATGGACCCAACACTATTGATCAAACTTGGCCGCTGGCAATGGTGGTTTTTGGTGGCAATCAACATATTCTTCCTCATTGTGGGGCAGGCTGGTGCTGTGTTACTTGGAAGATTTTATTATGACCAGGGTGGTAATAGTACATGGATGGCTACCCTTGTGCAAACCGCAGCTTTTCCAGTTCTTGTTATCCCACTTTATTTTCTTCCTTCGCAGAAAGAAGATCAATCAACTTCTTCAACTTCACCTTCCCTTCTAGTTCTTGCCTTGATTTACTTCGTTCTTGGACTGATCATTGCTGGTGACAACATGTTGTATTCTACTGGACTCCTGTACCTATCTGCCTCTACATACTCCATCATTTCTTCAACTCAATTAGCTTTCAATGCAGTCTTCTCGTACTTCATCAATTCTCAGAAGTTCAGTGCATTGATTTTCAATTCGGTGATTATCCTGACATTGTCCGTGGCTCTTATTGGTGTGAATGATGACTCGGATGGACCTGCAGGGGTATCAACACAGAAACATATCATTGGCTTTATCTGTACCCTTGCTGCTTCTGCAATCTACTCCCTTCTACTTTCCCTCATGCAGCTTACTTTCCAGAAGGTTCTGAAAAAGGAAACTTTCTCTGTGGTTTTGCAAATGCAAATTTTTACAGCACTTGTTGCGACTTGTGCTTCAGTTGTGGGTCTTTTTGCAAGTGGGGATTGGAAGACTTTACATGGAGAAATGGAAAGTTTTGGTAAGGGAAGAGTTTCGTATGTGATGACTTTGGTGTGGACAGCTGTTTCTTGGCAAGTTTGTTCTGTTGGTGTGGTGGGTTTAATTTTCGTGGTGTCTTCCCTATTCTCGAACGTAATTAGTACTCTCTCTTTGGCTGTTACTCCTATAGCTGCTGTGATAGTTTTCCATGACAAGATGAATGGTGTGAAGGTAATTGCGATGCTAATGGCTATATGGGGTTCTGCTTCTTATATTTATCAAAACTACCTTGATGATGCCAAGGCAAGAAGAGCAGTGGCTGATGTTAGTGAATCGCACATTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

399

Amino Acids

43.28

Weight (kDa)

5.93

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	67 - 384	2.8e-131	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44750 AT1G44750 AT1G44750
fragaria_vesca	FvH4_7g08740 FvH4_7g08740 FvH4_7g08740 FvH4_7g08740
malus_domestica	MD07G1088200.v1.1
prunus_persica	Prupe.2G115100_v2.0.a1 Prupe.2G115100_v2.0.a1
pyrus_communis	pycom02g19390 pycom02g19400 pycom07g07080 pycom11g02920
rosa_chinensis	RchiOBHm_Chr1g0343971
rosa_laevigata	RLG00000028938
rosa_multiflora	Rmu_ssc0000434.1_g000033
rosa_roxburghii	Rroxscaffold_4G00310190
rosa_rugosa	Rorug01G0170200 Rorug01G0170300 Rorug01G0170400
rosa_samantha	Rh1AG186800 Rh1BG153200 Rh1CG172300 Rh1DG185500
rosa_wichuraiana	Rw1G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	658
AccII	CGCG	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	3 cut(s)	89, 181, 315
AclWI	GGATC	2 cut(s)	90, 103
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	798
AcuI	CTGAAG	1 cut(s)	813
AfaI	GTAC	5 cut(s)	289, 482, 548, 694, 1015
AfiI	CCNNNNNNNGG	2 cut(s)	88, 229
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	5 cut(s)	136, 387, 516, 532, 586
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	5 cut(s)	320, 527, 742, 935, 1043
AluI	AGCT	5 cut(s)	320, 527, 742, 935, 1043
AlwI	GGATC	2 cut(s)	90, 103
AlwNI	CAGNNNCTG	1 cut(s)	1172
Aor13HI	TCCGGA	1 cut(s)	38
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	4 cut(s)	317, 701, 739, 1043
ApoI	RAATTY	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	904
AspS9I	GGNCC	4 cut(s)	15, 79, 154, 647
AsuHPI	GGTGA	3 cut(s)	384, 461, 604
AvaII	GGWCC	4 cut(s)	15, 79, 154, 647
BaeI	ACNNNNGTAYC	2 cut(s)	464, 497
BamHI	GGATCC	1 cut(s)	95
BbsI	GAAGAC	3 cut(s)	532, 869, 981
BbvI	GCAGC	4 cut(s)	329, 688, 751, 1030
BccI	CCATC	6 cut(s)	70, 134, 145, 289, 512, 638
BcgI	CGANNNNNNTGC	2 cut(s)	525, 559
BciT130I	CCWGG	1 cut(s)	275
BclI	TGATCA	2 cut(s)	168, 438
BfaI	CTAG	2 cut(s)	48, 404
BfmI	CTRYAG	2 cut(s)	651, 1038
BfuAI	ACCTGC	1 cut(s)	658
BisI	GCNGC	5 cut(s)	181, 318, 702, 740, 1044
BlsI	GCNGC	5 cut(s)	182, 319, 703, 741, 1045
BmcAI	AGTACT	1 cut(s)	1015
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	4 cut(s)	15, 79, 154, 647
BmgT120I	GGNCC	4 cut(s)	15, 79, 154, 647
BmiI	GGNNCC	3 cut(s)	16, 97, 156
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	1083, 1138
BpiI	GAAGAC	3 cut(s)	532, 869, 981
BsaJI	CCNNGG	3 cut(s)	274, 612, 1152
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 229
Bse1I	ACTGG	2 cut(s)	326, 475
Bse3DI	GCAATG	3 cut(s)	194, 441, 1191
BseAI	TCCGGA	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	3 cut(s)	274, 612, 1152
BseGI	GGATG	3 cut(s)	126, 300, 649
BseLI	CCNNNNNNNGG	2 cut(s)	88, 229
BseMI	GCAATG	3 cut(s)	194, 441, 1191
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	2 cut(s)	326, 475
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	4 cut(s)	329, 688, 751, 1030
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	88, 229
BsnI	GGCC	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	38
Bsp143I	GATC	4 cut(s)	95, 168, 370, 438
BspACI	CCGC	3 cut(s)	89, 181, 315
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	574
BspEI	TCCGGA	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	3 cut(s)	16, 97, 156
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	2 cut(s)	90, 103
BspQI	GCTCTTC	1 cut(s)	1156
BsrDI	GCAATG	3 cut(s)	194, 441, 1191
BsrI	ACTGG	2 cut(s)	326, 475
BssECI	CCNNGG	3 cut(s)	274, 612, 1152
BssMI	GATC	4 cut(s)	95, 168, 370, 438
BssT1I	CCWWGG	1 cut(s)	1152
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	2 cut(s)	895, 1156
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstC8I	GCNNGC	2 cut(s)	185, 237
BstDEI	CTNAG	1 cut(s)	561
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	3 cut(s)	126, 300, 649
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	4 cut(s)	98, 171, 373, 441
BstMBI	GATC	4 cut(s)	95, 168, 370, 438
BstMWI	GCNNNNNNNGC	5 cut(s)	533, 707, 815, 824, 1163
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	2 cut(s)	651, 1038
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	4 cut(s)	329, 688, 751, 1030
BstV2I	GAAGAC	3 cut(s)	532, 869, 981
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	1106
BtsCI	GGATG	3 cut(s)	126, 300, 649
BtsI	GCAGTG	1 cut(s)	1173
BtsIMutI	CAGTG	3 cut(s)	153, 577, 1173
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	2 cut(s)	185, 237
CaiI	CAGNNNCTG	1 cut(s)	1172
Cfr13I	GGNCC	4 cut(s)	15, 79, 154, 647
Csp6I	GTAC	5 cut(s)	288, 481, 547, 693, 1014
CviAII	CATG	5 cut(s)	291, 457, 736, 872, 1061
CviQI	GTAC	5 cut(s)	288, 481, 547, 693, 1014
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	4 cut(s)	97, 170, 372, 440
DpnII	GATC	4 cut(s)	95, 168, 370, 438
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	895, 1156
EarI	CTCTTC	2 cut(s)	895, 1156
Eco130I	CCWWGG	1 cut(s)	1152
Eco47I	GGWCC	4 cut(s)	15, 79, 154, 647
Eco57I	CTGAAG	1 cut(s)	813
EcoO109I	RGGNCCY	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	1152
ErhI	CCWWGG	1 cut(s)	1152
FaeI	CATG	5 cut(s)	294, 460, 739, 875, 1064
FatI	CATG	5 cut(s)	290, 456, 735, 871, 1060
FbaI	TGATCA	2 cut(s)	168, 438
Fnu4HI	GCNGC	5 cut(s)	181, 318, 702, 740, 1044
FokI	GGATG	3 cut(s)	113, 307, 656
Fsp4HI	GCNGC	5 cut(s)	181, 318, 702, 740, 1044
FspBI	CTAG	2 cut(s)	48, 404
GluI	GCNGC	5 cut(s)	181, 318, 702, 740, 1044
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	5 cut(s)	294, 460, 739, 875, 1064
HinfI	GANTC	4 cut(s)	7, 474, 638, 1184
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	3 cut(s)	384, 461, 604
Hpy166II	GTNNAC	1 cut(s)	930
Hpy188I	TCNGA	4 cut(s)	75, 564, 643, 762
Hpy188III	TCNNGA	4 cut(s)	39, 601, 751, 1000
Hpy8I	GTNNAC	1 cut(s)	930
HpyAV	CCTTC	6 cut(s)	366, 405, 410, 731, 748, 1075
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	1005
HpyCH4V	TGCA	9 cut(s)	310, 536, 575, 653, 710, 739, 790, 796, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	533, 707, 815, 824, 1163
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	1 cut(s)	1005
Hsp92II	CATG	5 cut(s)	294, 460, 739, 875, 1064
Kpn2I	TCCGGA	1 cut(s)	38
Ksp22I	TGATCA	2 cut(s)	168, 438
Kzo9I	GATC	4 cut(s)	95, 168, 370, 438
LguI	GCTCTTC	1 cut(s)	1156
Lsp1109I	GCAGC	4 cut(s)	329, 688, 751, 1030
LweI	GCATC	2 cut(s)	1083, 1138
MaeI	CTAG	2 cut(s)	48, 404
MaeII	ACGT	1 cut(s)	1005
MaeIII	GTNAC	3 cut(s)	249, 449, 1030
MalI	GATC	4 cut(s)	97, 170, 372, 440
MboI	GATC	4 cut(s)	95, 168, 370, 438
MflI	RGATCY	1 cut(s)	95
MluCI	AATT	7 cut(s)	521, 556, 586, 798, 975, 1008, 1086
MlyI	GAGTC	2 cut(s)	468, 632
MnlI	CCTC	7 cut(s)	28, 34, 37, 92, 233, 502, 743
MroI	TCCGGA	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	904
MseI	TTAA	1 cut(s)	974
MspA1I	CMGCKG	2 cut(s)	183, 935
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	533, 707, 815, 824, 1163
NdeII	GATC	4 cut(s)	95, 168, 370, 438
NlaIII	CATG	5 cut(s)	294, 460, 739, 875, 1064
NlaIV	GGNNCC	3 cut(s)	16, 97, 156
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	460
PciI	ACATGT	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	1156
PcsI	WCGNNNNNNNCGW	1 cut(s)	1193
PdmI	GAANNNNTTC	1 cut(s)	904
PfeI	GAWTC	2 cut(s)	7, 1184
PflFI	GACNNNGTC	1 cut(s)	607
PkrI	GCNGC	5 cut(s)	182, 319, 703, 741, 1045
PleI	GAGTC	2 cut(s)	468, 632
PpsI	GAGTC	2 cut(s)	468, 632
PpuMI	RGGWCCY	1 cut(s)	15
PscI	ACATGT	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	3 cut(s)	16, 97, 156
PspPI	GGNCC	4 cut(s)	15, 79, 154, 647
PspPPI	RGGWCCY	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	1172
PsuI	RGATCY	1 cut(s)	95
PsyI	GACNNNGTC	1 cut(s)	607
PvuII	CAGCTG	1 cut(s)	935
RsaI	GTAC	5 cut(s)	289, 482, 548, 694, 1015
RsaNI	GTAC	5 cut(s)	288, 481, 547, 693, 1014
SapI	GCTCTTC	1 cut(s)	1156
SaqAI	TTAA	1 cut(s)	974
SatI	GCNGC	5 cut(s)	181, 318, 702, 740, 1044
Sau3AI	GATC	4 cut(s)	95, 168, 370, 438
Sau96I	GGNCC	4 cut(s)	15, 79, 154, 647
SbfI	CCTGCAGG	1 cut(s)	655
ScaI	AGTACT	1 cut(s)	1015
SchI	GAGTC	2 cut(s)	468, 632
ScrFI	CCNGG	1 cut(s)	275
SdaI	CCTGCAGG	1 cut(s)	655
SfaNI	GCATC	2 cut(s)	1083, 1138
SfcI	CTRYAG	2 cut(s)	651, 1038
SinI	GGWCC	4 cut(s)	15, 79, 154, 647
Sse8387I	CCTGCAGG	1 cut(s)	655
Sse9I	AATT	7 cut(s)	521, 556, 586, 798, 975, 1008, 1086
SsiI	CCGC	3 cut(s)	89, 181, 315
SspMI	CTAG	2 cut(s)	48, 404
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	1152
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	1008
TaqI	TCGA	2 cut(s)	5, 1001
TasI	AATT	7 cut(s)	521, 556, 586, 798, 975, 1008, 1086
TatI	WGTACW	2 cut(s)	287, 1013
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	7, 1184
Tru1I	TTAA	1 cut(s)	974
Tru9I	TTAA	1 cut(s)	974
TscAI	CASTG	3 cut(s)	153, 577, 1173
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	4 cut(s)	317, 701, 739, 1043
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	156, 541, 1085
TspGWI	ACGGA	2 cut(s)	108, 601
TspRI	CASTG	3 cut(s)	153, 577, 1173
Tth111I	GACNNNGTC	1 cut(s)	607
VpaK11BI	GGWCC	4 cut(s)	15, 79, 154, 647
XapI	RAATTY	1 cut(s)	798
XceI	RCATGY	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	904
XspI	CTAG	2 cut(s)	48, 404
ZrmI	AGTACT	1 cut(s)	1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.