Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006723

Physical Location & Seq

Genomic Coordinates Forward (+)

23143808 .. 23144954

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0170300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAAGGGTGGTGGTATGCTTCTTCCAGGGCAACGGTTTTGCCCCATGGAAGATGAGCTACTCATGTTCTACCTTAAGCCTAAGGTGAACGGGATGCAAGTGCCCGGCAACGAAGACGTCATCTGCGAGATGGATCTTTACAGTGACCAAGATCCTTGGAAAATATGGGAAAGATTCGAAGCAAGAAGAGCCAACGACTTGAGGAGGAACAAAGATCTCTACTTTTTCACCCAAAAGAAGAAGAAGACTGCAAGAACCTCACGTGCAAGCCGAACAGTTGGGAGTGGCGGTACTTGGAGAGGCCTAAACGCAGAAAAGGAGATATATCTTCTTGATCAGAATCAGCAGCCAACATCTACTCTTCTTGGTTTCAAGAAAACCTACACCTACAAGAACAAGGGCTCTGTGCATCATGGTTGCTGGATCATGTATGAGTTTGAACTTGATAAGTCACAACTCCTGCACAAGAAACAAGTAGACAAGAATGAATACGTTCTTTGTTTACTTAGGAAGAATGATGCACTACCGGAAAAAAAGAGAAAAAGGCAAGAAAAAGAGGAGATGCTTGAAGATTATGTCGTGGACGATGATGGAGATAACATCGATCCTGAATGGGTTATTGAGGAGTCGAGAGAGAGACGACAACGTCTTCTACCATACACTGATCAAGAAGAGAATATGGGGCTCCAACAATTCGAGGCTGATCAAGGAGAATCGCCCTTGGAGTTGGCTGAATTAGAAAAGTGGTTTGATGCAGAATTTTGTGCTGAAAATGTTGCCTCGCTAGTTGATGACAATTCAGGACTGCAACAATTGGAATCTGAATCTCAACTAGGAGAAGAAAATCTGGAGCAGCAAATGGGAGCTGAAGCCAATGTGGATGGAGAGAACTTGAGTGACGCTATGCTTGGTGAAAACTGGCCTATGTCTTTTTTGGAAGATCTAATGATTGATGAGCAGCCAAATACCATGGAAGTAGGAGAGTGGAATGCCTGCTTATTCAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

336

Amino Acids

39.22

Weight (kDa)

4.62

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 148	9.1e-25	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44750 AT1G44750 AT1G44750
fragaria_vesca	FvH4_7g08740 FvH4_7g08740 FvH4_7g08740 FvH4_7g08740
malus_domestica	MD07G1088200.v1.1
prunus_persica	Prupe.2G115100_v2.0.a1 Prupe.2G115100_v2.0.a1
pyrus_communis	pycom02g19390 pycom02g19400 pycom07g07080 pycom11g02920
rosa_chinensis	RchiOBHm_Chr1g0343971
rosa_laevigata	RLG00000028938
rosa_multiflora	Rmu_ssc0000434.1_g000033
rosa_roxburghii	Rroxscaffold_4G00310190
rosa_rugosa	Rorug01G0170200 Rorug01G0170300 Rorug01G0170400
rosa_samantha	Rh1AG186800 Rh1BG153200 Rh1CG172300 Rh1DG185500
rosa_wichuraiana	Rw1G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	645
AatII	GACGTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	4 cut(s)	141, 146, 431, 599
AcsI	RAATTY	1 cut(s)	758
AcuI	CTGAAG	1 cut(s)	888
AcvI	CACGTG	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	292
AflII	CTTAAG	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	373, 440, 569
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	2 cut(s)	58, 866
AluI	AGCT	2 cut(s)	58, 866
Alw26I	GTCTC	1 cut(s)	631
AlwI	GGATC	4 cut(s)	141, 146, 431, 599
AoxI	GGCC	2 cut(s)	301, 920
ApeKI	GCWGC	3 cut(s)	346, 853, 958
ApoI	RAATTY	1 cut(s)	758
Asp700I	GAANNNNTTC	1 cut(s)	492
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	97, 220, 923
AsuII	TTCGAA	1 cut(s)	177
AxyI	CCTNAGG	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	105
BanII	GRGCYC	2 cut(s)	404, 687
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbrPI	CACGTG	1 cut(s)	263
BbsI	GAAGAC	3 cut(s)	120, 251, 641
BbvI	GCAGC	3 cut(s)	358, 865, 970
BccI	CCATC	3 cut(s)	124, 584, 875
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	3 cut(s)	334, 664, 703
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	2 cut(s)	785, 833
BfrI	CTTAAG	1 cut(s)	74
BglII	AGATCT	2 cut(s)	214, 940
BisI	GCNGC	3 cut(s)	347, 854, 959
BlsI	GCNGC	3 cut(s)	348, 855, 960
Bme1390I	CCNGG	2 cut(s)	27, 105
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	2 cut(s)	27, 105
BmsI	GCATC	5 cut(s)	84, 418, 508, 552, 742
BpiI	GAAGAC	3 cut(s)	120, 251, 641
BpmI	CTGGAG	1 cut(s)	869
Bpu14I	TTCGAA	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	220, 913
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	603
BsaAI	YACGTR	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	5 cut(s)	26, 45, 155, 720, 969
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bse1I	ACTGG	1 cut(s)	923
Bse21I	CCTNAGG	1 cut(s)	81
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	603
BseDI	CCNNGG	5 cut(s)	26, 45, 155, 720, 969
BseGI	GGATG	2 cut(s)	99, 886
BseJI	GATNNNNATC	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	923
BseRI	GAGGAG	3 cut(s)	217, 572, 638
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	3 cut(s)	358, 865, 970
BsgI	GTGCAG	1 cut(s)	446
BshFI	GGCC	2 cut(s)	303, 922
BshVI	ATCGAT	1 cut(s)	603
BsiSI	CCGG	2 cut(s)	105, 527
BsmAI	GTCTC	1 cut(s)	631
BsmBI	CGTCTC	1 cut(s)	631
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	2 cut(s)	303, 922
Bsp119I	TTCGAA	1 cut(s)	177
Bsp1286I	GDGCHC	3 cut(s)	105, 404, 687
Bsp143I	GATC	9 cut(s)	133, 151, 214, 334, 423, 604, 664, 703, 940
Bsp19I	CCATGG	2 cut(s)	45, 969
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	2 cut(s)	303, 922
BspDI	ATCGAT	1 cut(s)	603
BspLI	GGNNCC	1 cut(s)	686
BspPI	GGATC	4 cut(s)	141, 146, 431, 599
BspQI	GCTCTTC	1 cut(s)	181
BspT104I	TTCGAA	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	923
BssECI	CCNNGG	5 cut(s)	26, 45, 155, 720, 969
BssMI	GATC	9 cut(s)	133, 151, 214, 334, 423, 604, 664, 703, 940
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	4 cut(s)	45, 155, 720, 969
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	3 cut(s)	36, 143, 277
Bst6I	CTCTTC	3 cut(s)	181, 366, 666
BstACI	GRCGYC	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	268, 994
BstDEI	CTNAG	2 cut(s)	81, 506
BstDSI	CCRYGG	2 cut(s)	45, 969
BstF5I	GGATG	2 cut(s)	99, 886
BstKTI	GATC	9 cut(s)	136, 154, 217, 337, 426, 607, 667, 706, 943
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	9 cut(s)	133, 151, 214, 334, 423, 604, 664, 703, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	25, 103
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	358, 865, 970
BstV2I	GAAGAC	3 cut(s)	120, 251, 641
BstX2I	RGATCY	4 cut(s)	133, 151, 214, 940
BstYI	RGATCY	4 cut(s)	133, 151, 214, 940
Bsu15I	ATCGAT	1 cut(s)	603
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	303, 922
BsuTUI	ATCGAT	1 cut(s)	603
BtgI	CCRYGG	2 cut(s)	45, 969
BtsCI	GGATG	2 cut(s)	99, 886
BtsIMutI	CAGTG	2 cut(s)	148, 660
Cac8I	GCNNGC	2 cut(s)	268, 994
ClaI	ATCGAT	1 cut(s)	603
CseI	GACGC	1 cut(s)	908
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	5 cut(s)	46, 64, 413, 427, 970
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	2 cut(s)	81, 506
DpnI	GATC	9 cut(s)	135, 153, 216, 336, 425, 606, 666, 705, 942
DpnII	GATC	9 cut(s)	133, 151, 214, 334, 423, 604, 664, 703, 940
DrdI	GACNNNNNNGTC	1 cut(s)	645
DseDI	GACNNNNNNGTC	1 cut(s)	645
Eam1104I	CTCTTC	3 cut(s)	181, 366, 666
EarI	CTCTTC	3 cut(s)	181, 366, 666
Eco130I	CCWWGG	4 cut(s)	45, 155, 720, 969
Eco147I	AGGCCT	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	404, 687
Eco57I	CTGAAG	1 cut(s)	888
Eco72I	CACGTG	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	4 cut(s)	45, 155, 720, 969
EcoT38I	GRGCYC	2 cut(s)	404, 687
ErhI	CCWWGG	4 cut(s)	45, 155, 720, 969
Esp3I	CGTCTC	1 cut(s)	631
FaeI	CATG	5 cut(s)	49, 67, 416, 430, 973
FatI	CATG	5 cut(s)	45, 63, 412, 426, 969
FbaI	TGATCA	3 cut(s)	334, 664, 703
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	3 cut(s)	347, 854, 959
FokI	GGATG	2 cut(s)	106, 893
FriOI	GRGCYC	2 cut(s)	404, 687
Fsp4HI	GCNGC	3 cut(s)	347, 854, 959
FspBI	CTAG	2 cut(s)	785, 833
GluI	GCNGC	3 cut(s)	347, 854, 959
GsuI	CTGGAG	1 cut(s)	869
HaeIII	GGCC	2 cut(s)	303, 922
HapII	CCGG	2 cut(s)	105, 527
HgaI	GACGC	1 cut(s)	908
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	5 cut(s)	49, 67, 416, 430, 973
HinfI	GANTC	6 cut(s)	174, 340, 626, 713, 818, 824
HpaII	CCGG	2 cut(s)	105, 527
HphI	GGTGA	3 cut(s)	97, 220, 923
Hpy166II	GTNNAC	4 cut(s)	88, 478, 503, 583
Hpy188I	TCNGA	3 cut(s)	339, 823, 1004
Hpy188III	TCNNGA	7 cut(s)	332, 373, 608, 630, 668, 801, 848
Hpy8I	GTNNAC	4 cut(s)	88, 478, 503, 583
HpyCH4III	ACNGT	3 cut(s)	36, 143, 277
HpyCH4IV	ACGT	4 cut(s)	117, 262, 492, 646
HpyCH4V	TGCA	8 cut(s)	97, 251, 266, 409, 463, 521, 755, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	81, 506
HpySE526I	ACGT	4 cut(s)	117, 262, 492, 646
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	5 cut(s)	49, 67, 416, 430, 973
Ksp22I	TGATCA	3 cut(s)	334, 664, 703
Kzo9I	GATC	9 cut(s)	133, 151, 214, 334, 423, 604, 664, 703, 940
LguI	GCTCTTC	1 cut(s)	181
LmnI	GCTCC	3 cut(s)	690, 850, 863
Lsp1109I	GCAGC	3 cut(s)	358, 865, 970
LweI	GCATC	5 cut(s)	84, 418, 508, 552, 742
MaeI	CTAG	2 cut(s)	785, 833
MaeII	ACGT	4 cut(s)	117, 262, 492, 646
MaeIII	GTNAC	3 cut(s)	143, 450, 896
MalI	GATC	9 cut(s)	135, 153, 216, 336, 425, 606, 666, 705, 942
MboI	GATC	9 cut(s)	133, 151, 214, 334, 423, 604, 664, 703, 940
MfeI	CAATTG	1 cut(s)	812
MflI	RGATCY	4 cut(s)	133, 151, 214, 940
MhlI	GDGCHC	3 cut(s)	105, 404, 687
MluCI	AATT	5 cut(s)	692, 734, 758, 796, 812
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	8 cut(s)	195, 198, 268, 293, 550, 616, 691, 790
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	2 cut(s)	105, 527
MspR9I	CCNGG	2 cut(s)	27, 105
MunI	CAATTG	1 cut(s)	812
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	188
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	2 cut(s)	45, 969
NdeII	GATC	9 cut(s)	133, 151, 214, 334, 423, 604, 664, 703, 940
NlaIII	CATG	5 cut(s)	49, 67, 416, 430, 973
NlaIV	GGNNCC	1 cut(s)	686
NmuCI	GTSAC	3 cut(s)	143, 450, 896
NspV	TTCGAA	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	303
PciSI	GCTCTTC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 268
PctI	GAATGC	1 cut(s)	994
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	5 cut(s)	174, 340, 713, 818, 824
PflFI	GACNNNGTC	1 cut(s)	645
PkrI	GCNGC	3 cut(s)	348, 855, 960
PleI	GAGTC	1 cut(s)	634
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	634
Ppu21I	YACGTR	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	25
PspCI	CACGTG	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	686
PsuI	RGATCY	4 cut(s)	133, 151, 214, 940
PsyI	GACNNNGTC	1 cut(s)	645
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	3 cut(s)	347, 854, 959
Sau3AI	GATC	9 cut(s)	133, 151, 214, 334, 423, 604, 664, 703, 940
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	2 cut(s)	27, 105
SduI	GDGCHC	3 cut(s)	105, 404, 687
SfaNI	GCATC	5 cut(s)	84, 418, 508, 552, 742
SfuI	TTCGAA	1 cut(s)	177
SmlI	CTYRAG	3 cut(s)	74, 199, 892
SmoI	CTYRAG	3 cut(s)	74, 199, 892
Sse9I	AATT	5 cut(s)	692, 734, 758, 796, 812
SseBI	AGGCCT	1 cut(s)	303
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	2 cut(s)	785, 833
StuI	AGGCCT	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	25, 103
StyI	CCWWGG	4 cut(s)	45, 155, 720, 969
TaaI	ACNGT	3 cut(s)	36, 143, 277
TaiI	ACGT	4 cut(s)	120, 265, 495, 649
TaqI	TCGA	4 cut(s)	177, 603, 629, 696
TasI	AATT	5 cut(s)	692, 734, 758, 796, 812
TfiI	GAWTC	5 cut(s)	174, 340, 713, 818, 824
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	2 cut(s)	148, 667
TseFI	GTSAC	3 cut(s)	143, 450, 896
TseI	GCWGC	3 cut(s)	346, 853, 958
Tsp45I	GTSAC	3 cut(s)	143, 450, 896
TspDTI	ATGAA	2 cut(s)	17, 501
TspRI	CASTG	2 cut(s)	148, 667
Tth111I	GACNNNGTC	1 cut(s)	645
Vha464I	CTTAAG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	758
XmiI	GTMKAC	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	2 cut(s)	785, 833
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.