Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000434.1

Orthogroup ID

OG0006723

Physical Location & Seq

Genomic Coordinates Forward (+)

144796 .. 147271

Gene Structure 2476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000434.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atgccaagtacatcaaatctcttgggtcctcgctcctcacttttctccggagtttctagctttctgttcccccgaacatttctgatggtcctccacgcggacatatcctacacgctcatagatagccaagaagccatcccattcaaaaatgaaactgtgatggacccaacactattgatcaaacttggccgctggcaatggtggtttttggtggcaatcaacatattcttcctcattgtggggcaggctggtgctgtgttactcggaagattttattatgaccagggtggtaatagtacgtggatggctactcttgtgcaaaccgcagcttttccagttcttgttatcccactttattttcttccttcgcagaaagaagatcaatcaacttcttcaacttcaccttcccttctagttcttgccttgatttacttcgttcttggactggtcattgccggtgacaacatgttgtattctactggactcttgtacctatctgcctctacatactccatcatttcttcaactcaattagctttcaatgcagtcttctcatacttcatcaattctcagaagttcagtgcattgattttcaattcggtgattatcctgacattgtccgtggctcttattggtgtgaatgatgactcggatggacctgcaggggtatcaacgcagaaacatatcattggctttatctgtacccttgctgcttctgcaatctactcccttctactctccctcatgcagcttactttccagaaggttctgaaaaaggaaactttctctgtggttttgcaaatgcaaatttttacagcacttgttgcgacttgtgcttcagttgtgggtctttttgcaagtggggattggaagactttacatggagaaatggaaagttttggtaagggaagagtttcgtatgtgatgactttggtgtggacagctgtttcttggcaagtttgttctgttggtgtggtgggtttaattttcgtggtgtcttccctattctcgaacgtaatcagtactctctctttggctgttactcctatagctgctgtgatagttttccatgacaagatgaatggtgtgaagataattgctatgctaatggctatatggggttctggttcttatatctatcaaaactaccttgatgatgccaaggcaagaagagcagtggctgatgttagtgaatcgcacattgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

402

Amino Acids

43.74

Weight (kDa)

6.51

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44750 AT1G44750 AT1G44750
fragaria_vesca	FvH4_7g08740 FvH4_7g08740 FvH4_7g08740 FvH4_7g08740
malus_domestica	MD07G1088200.v1.1
prunus_persica	Prupe.2G115100_v2.0.a1 Prupe.2G115100_v2.0.a1
pyrus_communis	pycom02g19390 pycom02g19400 pycom07g07080 pycom11g02920
rosa_chinensis	RchiOBHm_Chr1g0343971
rosa_laevigata	RLG00000028938
rosa_multiflora	Rmu_ssc0000434.1_g000033
rosa_roxburghii	Rroxscaffold_4G00310190
rosa_rugosa	Rorug01G0170200 Rorug01G0170300 Rorug01G0170400
rosa_samantha	Rh1AG186800 Rh1BG153200 Rh1CG172300 Rh1DG185500
rosa_wichuraiana	Rw1G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	667
AccII	CGCG	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	3 cut(s)	98, 190, 324
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	807
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	5 cut(s)	10, 298, 491, 703, 1024
AfiI	CCNNNNNNNGG	2 cut(s)	97, 238
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	5 cut(s)	145, 396, 525, 541, 595
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	6 cut(s)	60, 329, 536, 751, 944, 1052
AluI	AGCT	6 cut(s)	60, 329, 536, 751, 944, 1052
AlwNI	CAGNNNCTG	1 cut(s)	1181
Aor13HI	TCCGGA	1 cut(s)	47
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	4 cut(s)	326, 710, 748, 1052
ApoI	RAATTY	1 cut(s)	807
Asp700I	GAANNNNTTC	1 cut(s)	913
AspS9I	GGNCC	4 cut(s)	26, 88, 163, 656
AsuHPI	GGTGA	3 cut(s)	393, 470, 613
AvaII	GGWCC	4 cut(s)	26, 88, 163, 656
BaeI	ACNNNNGTAYC	2 cut(s)	473, 506
BbsI	GAAGAC	3 cut(s)	541, 878, 990
BbvI	GCAGC	4 cut(s)	338, 697, 760, 1039
BccI	CCATC	6 cut(s)	79, 143, 154, 298, 521, 647
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	1 cut(s)	177
BfaI	CTAG	2 cut(s)	57, 413
BfmI	CTRYAG	2 cut(s)	660, 1047
BfuAI	ACCTGC	1 cut(s)	667
BisI	GCNGC	5 cut(s)	190, 327, 711, 749, 1053
BlsI	GCNGC	5 cut(s)	191, 328, 712, 750, 1054
BmcAI	AGTACT	1 cut(s)	1024
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	4 cut(s)	26, 88, 163, 656
BmgT120I	GGNCC	4 cut(s)	26, 88, 163, 656
BmiI	GGNNCC	2 cut(s)	27, 165
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	1147
BpiI	GAAGAC	3 cut(s)	541, 878, 990
BsaAI	YACGTR	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	283, 621, 1161
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 238
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	3 cut(s)	335, 450, 484
Bse3DI	GCAATG	3 cut(s)	203, 450, 1200
BseAI	TCCGGA	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	3 cut(s)	283, 621, 1161
BseGI	GGATG	3 cut(s)	135, 309, 658
BseLI	CCNNNNNNNGG	2 cut(s)	97, 238
BseMI	GCAATG	3 cut(s)	203, 450, 1200
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	3 cut(s)	335, 450, 484
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	338, 697, 760, 1039
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	48, 456
BslI	CCNNNNNNNGG	2 cut(s)	97, 238
BsnI	GGCC	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	177, 379
BspACI	CCGC	3 cut(s)	98, 190, 324
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	583
BspEI	TCCGGA	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	27, 165
BspMAI	CTGCAG	1 cut(s)	664
BspMI	ACCTGC	1 cut(s)	667
BspQI	GCTCTTC	1 cut(s)	1165
BsrDI	GCAATG	3 cut(s)	203, 450, 1200
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	3 cut(s)	335, 450, 484
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	283, 621, 1161
BssMI	GATC	2 cut(s)	177, 379
BssT1I	CCWWGG	1 cut(s)	1161
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	2 cut(s)	904, 1165
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstBAI	YACGTR	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	194, 246
BstDEI	CTNAG	1 cut(s)	570
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	135, 309, 658
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	2 cut(s)	180, 382
BstMBI	GATC	2 cut(s)	177, 379
BstMWI	GCNNNNNNNGC	5 cut(s)	542, 716, 824, 833, 1172
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	2 cut(s)	660, 1047
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	4 cut(s)	338, 697, 760, 1039
BstV2I	GAAGAC	3 cut(s)	541, 878, 990
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	3 cut(s)	135, 309, 658
BtsI	GCAGTG	1 cut(s)	1182
BtsIMutI	CAGTG	2 cut(s)	586, 1182
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	2 cut(s)	194, 246
CaiI	CAGNNNCTG	1 cut(s)	1181
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	4 cut(s)	26, 88, 163, 656
Csp6I	GTAC	5 cut(s)	9, 297, 490, 702, 1023
CviAII	CATG	4 cut(s)	466, 745, 881, 1070
CviQI	GTAC	5 cut(s)	9, 297, 490, 702, 1023
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	2 cut(s)	179, 381
DpnII	GATC	2 cut(s)	177, 379
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	904, 1165
EarI	CTCTTC	2 cut(s)	904, 1165
Eco130I	CCWWGG	1 cut(s)	1161
Eco47I	GGWCC	4 cut(s)	26, 88, 163, 656
Eco57I	CTGAAG	1 cut(s)	822
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	1161
ErhI	CCWWGG	1 cut(s)	1161
FaeI	CATG	4 cut(s)	469, 748, 884, 1073
FatI	CATG	4 cut(s)	465, 744, 880, 1069
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	5 cut(s)	190, 327, 711, 749, 1053
FokI	GGATG	3 cut(s)	122, 316, 665
Fsp4HI	GCNGC	5 cut(s)	190, 327, 711, 749, 1053
FspBI	CTAG	2 cut(s)	57, 413
GluI	GCNGC	5 cut(s)	190, 327, 711, 749, 1053
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	48, 456
Hin1II	CATG	4 cut(s)	469, 748, 884, 1073
HinfI	GANTC	3 cut(s)	483, 647, 1193
HpaII	CCGG	2 cut(s)	48, 456
HphI	GGTGA	3 cut(s)	393, 470, 613
Hpy166II	GTNNAC	1 cut(s)	939
Hpy188I	TCNGA	5 cut(s)	84, 266, 573, 652, 771
Hpy188III	TCNNGA	4 cut(s)	48, 610, 760, 1009
Hpy8I	GTNNAC	1 cut(s)	939
HpyAV	CCTTC	5 cut(s)	375, 414, 419, 740, 757
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	2 cut(s)	299, 1014
HpyCH4V	TGCA	9 cut(s)	319, 545, 584, 662, 719, 748, 799, 805, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	542, 716, 824, 833, 1172
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	2 cut(s)	299, 1014
Hsp92II	CATG	4 cut(s)	469, 748, 884, 1073
Kpn2I	TCCGGA	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	177, 379
LguI	GCTCTTC	1 cut(s)	1165
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	4 cut(s)	338, 697, 760, 1039
LweI	GCATC	1 cut(s)	1147
MaeI	CTAG	2 cut(s)	57, 413
MaeII	ACGT	2 cut(s)	299, 1014
MaeIII	GTNAC	3 cut(s)	258, 458, 1039
MalI	GATC	2 cut(s)	179, 381
MboI	GATC	2 cut(s)	177, 379
MluCI	AATT	6 cut(s)	530, 565, 595, 807, 984, 1095
MlyI	GAGTC	2 cut(s)	477, 641
MnlI	CCTC	6 cut(s)	39, 46, 101, 242, 511, 752
MroI	TCCGGA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	913
MseI	TTAA	1 cut(s)	983
MspA1I	CMGCKG	2 cut(s)	192, 944
MspI	CCGG	2 cut(s)	48, 456
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	5 cut(s)	542, 716, 824, 833, 1172
NdeII	GATC	2 cut(s)	177, 379
NlaIII	CATG	4 cut(s)	469, 748, 884, 1073
NlaIV	GGNNCC	2 cut(s)	27, 165
NmuCI	GTSAC	1 cut(s)	458
NspI	RCATGY	1 cut(s)	469
PciI	ACATGT	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	1165
PcsI	WCGNNNNNNNCGW	1 cut(s)	1202
PdmI	GAANNNNTTC	1 cut(s)	913
PfeI	GAWTC	1 cut(s)	1193
PflFI	GACNNNGTC	1 cut(s)	616
PkrI	GCNGC	5 cut(s)	191, 328, 712, 750, 1054
PleI	GAGTC	2 cut(s)	477, 641
PpsI	GAGTC	2 cut(s)	477, 641
Ppu21I	YACGTR	1 cut(s)	300
PpuMI	RGGWCCY	1 cut(s)	26
PscI	ACATGT	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	27, 165
PspPI	GGNCC	4 cut(s)	26, 88, 163, 656
PspPPI	RGGWCCY	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	1181
PsyI	GACNNNGTC	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	5 cut(s)	10, 298, 491, 703, 1024
RsaNI	GTAC	5 cut(s)	9, 297, 490, 702, 1023
SapI	GCTCTTC	1 cut(s)	1165
SaqAI	TTAA	1 cut(s)	983
SatI	GCNGC	5 cut(s)	190, 327, 711, 749, 1053
Sau3AI	GATC	2 cut(s)	177, 379
Sau96I	GGNCC	4 cut(s)	26, 88, 163, 656
SbfI	CCTGCAGG	1 cut(s)	664
ScaI	AGTACT	1 cut(s)	1024
SchI	GAGTC	2 cut(s)	477, 641
ScrFI	CCNGG	1 cut(s)	284
SdaI	CCTGCAGG	1 cut(s)	664
SfaNI	GCATC	1 cut(s)	1147
SfcI	CTRYAG	2 cut(s)	660, 1047
SinI	GGWCC	4 cut(s)	26, 88, 163, 656
Sse8387I	CCTGCAGG	1 cut(s)	664
Sse9I	AATT	6 cut(s)	530, 565, 595, 807, 984, 1095
SsiI	CCGC	3 cut(s)	98, 190, 324
SspMI	CTAG	2 cut(s)	57, 413
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	1161
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	2 cut(s)	302, 1017
TaqI	TCGA	1 cut(s)	1010
TasI	AATT	6 cut(s)	530, 565, 595, 807, 984, 1095
TatI	WGTACW	2 cut(s)	8, 1022
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	1193
Tru1I	TTAA	1 cut(s)	983
Tru9I	TTAA	1 cut(s)	983
TscAI	CASTG	2 cut(s)	586, 1182
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	4 cut(s)	326, 710, 748, 1052
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	165, 550, 1094
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	2 cut(s)	586, 1182
Tth111I	GACNNNGTC	1 cut(s)	616
VpaK11BI	GGWCC	4 cut(s)	26, 88, 163, 656
XapI	RAATTY	1 cut(s)	807
XceI	RCATGY	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	913
XspI	CTAG	2 cut(s)	57, 413
ZrmI	AGTACT	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.