Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015684

Physical Location & Seq

Genomic Coordinates Reverse (-)

8720565 .. 8722463

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08940.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCAATAAGTTCGATTACAATTTTTGGGGTGCTAGGCAACATTATGTCAGGTTTGGTCTACCTTTCTCCTGCAAACGTGTTTGTGCGAATCGCGAAGCGTAGATCGACTGAGGAATTTGAGAGTATTCCATATGTCAGCAAACTGTTGAATGCCTACTTCTGGGTCTACTATGGATTTATTAAGCCTAACAGTGTGCTCGTAGCAACTGTCAATGTTTTTGGTGCTGCCGTCGAGATCGTTTTTCTTACCATATTTCTACTCTTTGCACCACCTAGAATGAAGATCAGGACTGCGATACTAGTTGTAGTTTTGGATGTGGCGTTTCCGGGAGCAACAATCTTACTCACTCACTTTCTACTAGACGGAGAAACAAGGATTGATGTTGCCGGAATCTGGTGTGTAATTTTCAGCATGATTGCATATGCTTCCCCTCTTTCAGCGATGAAAACTGTTGTGGCGTTAAAGAGTGTGGAGTACATGCCTTTCCTTCTCTCTTTCATCCTTTTTCTTAATGGAGGAGTTTGGACACTGTATGCCATTCTTGCAAAAGACTTGTTTGTTGGAATTCCAAACGGGAGTGGATTTTTACTTGGAACTGCACAGCTGATTCTCTATTTTATATACTGGAAACCTAAGTCATCAAAACAAGCATCTGACGGTTTAGAGGATCCACAGATAAGCGAAGCACTCATATCTAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005355 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008515 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015154 GO:0015157 GO:0015749 GO:0015755 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034285 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1902334 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

25.87

Weight (kDa)

8.59

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	8 - 91	7.6e-20	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	130 - 189	4.1e-14	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08940 FvH4_7g08940 FvH4_7g08940
prunus_persica	Prupe.2G118600_v2.0.a1 Prupe.2G118600_v2.0.a1
pyrus_communis	pycom07g07660
rosa_chinensis	RchiOBHm_Chr1g0344401
rosa_laevigata	RLG00000028900
rosa_multiflora	Rmu_sc0008332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309760
rosa_rugosa	Rorug01G0173700 Rorug01G0173800
rosa_samantha	Rh1AG190000 Rh1BG156900 Rh1CG175500
rosa_wichuraiana	Rw1G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	60, 168
AccII	CGCG	1 cut(s)	95
AclWI	GGATC	2 cut(s)	665, 678
AcsI	RAATTY	2 cut(s)	116, 567
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	2 cut(s)	162, 396
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	151
AhlI	ACTAGT	1 cut(s)	301
AluBI	AGCT	1 cut(s)	607
AluI	AGCT	1 cut(s)	607
Alw21I	GWGCWC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	665, 678
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	116, 567
AsuC2I	CCSGG	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	215
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	330
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	4 cut(s)	35, 276, 302, 362
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 396
Bse1I	ACTGG	1 cut(s)	632
BseGI	GGATG	2 cut(s)	322, 501
BseLI	CCNNNNNNNGG	2 cut(s)	162, 396
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	632
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	329, 390
BslI	CCNNNNNNNGG	2 cut(s)	162, 396
BsmI	GAATGC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	104, 237, 285, 670
Bsp68I	TCGCGA	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	672
BspPI	GGATC	2 cut(s)	665, 678
BsrI	ACTGG	1 cut(s)	632
BssMI	GATC	4 cut(s)	104, 237, 285, 670
Bst4CI	ACNGT	6 cut(s)	147, 194, 211, 454, 534, 662
BstDEI	CTNAG	2 cut(s)	111, 636
BstF5I	GGATG	2 cut(s)	322, 501
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	4 cut(s)	107, 240, 288, 673
BstMBI	GATC	4 cut(s)	104, 237, 285, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BtgZI	GCGATG	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	322, 501
BtsIMutI	CAGTG	2 cut(s)	199, 530
BtuMI	TCGCGA	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	2 cut(s)	415, 481
CviJI	RGCY	2 cut(s)	187, 607
CviKI_1	RGCY	2 cut(s)	187, 607
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	2 cut(s)	111, 636
DpnI	GATC	4 cut(s)	106, 239, 287, 672
DpnII	GATC	4 cut(s)	104, 237, 285, 670
EcoRI	GAATTC	1 cut(s)	567
FaeI	CATG	2 cut(s)	418, 484
FatI	CATG	2 cut(s)	414, 480
FauNDI	CATATG	2 cut(s)	133, 424
FblI	GTMKAC	2 cut(s)	60, 168
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	329, 488
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	4 cut(s)	35, 276, 302, 362
GluI	GCNGC	1 cut(s)	228
HapII	CCGG	2 cut(s)	329, 390
Hin1II	CATG	2 cut(s)	418, 484
HinfI	GANTC	3 cut(s)	90, 393, 610
HpaII	CCGG	2 cut(s)	329, 390
Hpy166II	GTNNAC	2 cut(s)	61, 169
Hpy188I	TCNGA	1 cut(s)	658
Hpy188III	TCNNGA	3 cut(s)	94, 235, 289
Hpy8I	GTNNAC	2 cut(s)	61, 169
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	500
HpyCH4III	ACNGT	6 cut(s)	147, 194, 211, 454, 534, 662
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	5 cut(s)	74, 269, 422, 548, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	2 cut(s)	111, 636
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	418, 484
Kzo9I	GATC	4 cut(s)	104, 237, 285, 670
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	8 cut(s)	36, 84, 148, 274, 342, 382, 403, 613
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	4 cut(s)	35, 276, 302, 362
MaeII	ACGT	1 cut(s)	78
MalI	GATC	4 cut(s)	106, 239, 287, 672
MboI	GATC	4 cut(s)	104, 237, 285, 670
MboII	GAAGA	1 cut(s)	295
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	4 cut(s)	21, 116, 405, 567
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	4 cut(s)	106, 444, 512, 661
MseI	TTAA	4 cut(s)	183, 464, 513, 706
MspA1I	CMGCKG	1 cut(s)	607
MspI	CCGG	2 cut(s)	329, 390
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	157
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	545
NciI	CCSGG	1 cut(s)	330
NdeI	CATATG	2 cut(s)	133, 424
NdeII	GATC	4 cut(s)	104, 237, 285, 670
NlaIII	CATG	2 cut(s)	418, 484
NlaIV	GGNNCC	1 cut(s)	672
NruI	TCGCGA	1 cut(s)	95
NspI	RCATGY	1 cut(s)	484
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	3 cut(s)	90, 393, 610
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	672
PsuI	RGATCY	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	607
RruI	TCGCGA	1 cut(s)	95
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	183, 464, 513, 706
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	4 cut(s)	104, 237, 285, 670
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	6 cut(s)	55, 66, 81, 277, 609, 637
SfaNI	GCATC	1 cut(s)	662
SpeI	ACTAGT	1 cut(s)	301
Sse9I	AATT	4 cut(s)	21, 116, 405, 567
SspMI	CTAG	4 cut(s)	35, 276, 302, 362
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	6 cut(s)	147, 194, 211, 454, 534, 662
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	14, 107, 234
TasI	AATT	4 cut(s)	21, 116, 405, 567
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	3 cut(s)	90, 393, 610
Tru1I	TTAA	4 cut(s)	183, 464, 513, 706
Tru9I	TTAA	4 cut(s)	183, 464, 513, 706
TscAI	CASTG	2 cut(s)	199, 537
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	3 cut(s)	296, 461, 490
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	199, 537
XapI	RAATTY	2 cut(s)	116, 567
XceI	RCATGY	1 cut(s)	484
XmiI	GTMKAC	2 cut(s)	60, 168
XspI	CTAG	4 cut(s)	35, 276, 302, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.