Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0015684

Physical Location & Seq

Genomic Coordinates Reverse (-)

6986531 .. 6987773

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCAGTAAGTTTCATTGTCCTTTTTGGGGTGCTAGGTAACATTATGTCGGGATTAGTCTACATCTCTCCTGCGAACGTGTTTGTGCGAATTGTAAAGCGTAGATCAACTGAGGAATTTGAGAGTATTCCTTATGTTAGCAAATTATTGAATGCTTATTTCTGGTCTTACTATGGACTTGTTGAACCTAACAGTGTGCTCGTGGCCAGCGTCAATATTTTCGGTGCTGGTGTTGAGATCGTTTTTCTTACCATATTTCTACTTTTCGCAACACCAAGAATGAAGGCTAGGACTGCCATGCTTGTTGCTGCTCTTGATGTGGCATTTCCAGCAGCAGCAATTTTGCTTACTCAGTTTCTGCTACATGGCAACAAGCGAATCGATGTAGCAGGATTGTTCTGTGTAGTCTTCAGCATGATTGCATATGCTTCCCCTCTTTCAGCAATGAAAACTGTGGTGATATTGAAGAGTGTGGAGTACATGCCTTTCCTTCTCTCATTCATCCTTTTCCTAAACGGAGGAGTTTGGACAACCTATTCCATTCTTGCAAAAGACTTGTTTGTTGGAATTCCAAATGGGATTGGATTTTTGCTTGGAACTGCTCAGCTGATTCTCTATGCAATATACTGGAAACCAACTAAGCCATTCAATCAAGTATCGGATGACTTAGAAGATCAACAGATTAGTGAAGCACTCGTCCCAGCTTCAAAATCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005355 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008515 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015154 GO:0015157 GO:0015749 GO:0015755 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034285 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1902334 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

240

Amino Acids

26.28

Weight (kDa)

8.59

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08940 FvH4_7g08940 FvH4_7g08940
prunus_persica	Prupe.2G118600_v2.0.a1 Prupe.2G118600_v2.0.a1
pyrus_communis	pycom07g07660
rosa_chinensis	RchiOBHm_Chr1g0344401
rosa_laevigata	RLG00000028900
rosa_multiflora	Rmu_sc0008332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309760
rosa_rugosa	Rorug01G0173700 Rorug01G0173800
rosa_samantha	Rh1AG190000 Rh1BG156900 Rh1CG175500
rosa_wichuraiana	Rw1G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	116, 567
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	28
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	5 cut(s)	151, 185, 466, 649, 708
AluBI	AGCT	2 cut(s)	607, 704
AluI	AGCT	2 cut(s)	607, 704
Alw21I	GWGCWC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	358
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	308, 332, 335
ApoI	RAATTY	2 cut(s)	116, 567
AsuHPI	GGTGA	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	206
BauI	CACGAG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	295, 344, 347
BfaI	CTAG	2 cut(s)	35, 288
BisI	GCNGC	3 cut(s)	309, 333, 336
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	3 cut(s)	310, 334, 337
BpiI	GAAGAC	1 cut(s)	400
Bpu1102I	GCTNAGC	1 cut(s)	603
Bsa29I	ATCGAT	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	632
Bse3DI	GCAATG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	381
BseGI	GGATG	2 cut(s)	501, 667
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	3 cut(s)	102, 365, 617
BseNI	ACTGG	1 cut(s)	632
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	3 cut(s)	295, 344, 347
BseYI	CCCAGC	1 cut(s)	700
BshFI	GGCC	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	683
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	104, 237, 673
Bsp1720I	GCTNAGC	1 cut(s)	603
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	3 cut(s)	103, 364, 616
BspDI	ATCGAT	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	632
BssMI	GATC	3 cut(s)	104, 237, 673
BssSI	CACGAG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	194, 454
Bst6I	CTCTTC	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	5 cut(s)	111, 351, 603, 639, 667
BstF5I	GGATG	2 cut(s)	501, 667
BstKTI	GATC	3 cut(s)	107, 240, 676
BstMBI	GATC	3 cut(s)	104, 237, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 329
BstNSI	RCATGY	1 cut(s)	484
BstV1I	GCAGC	3 cut(s)	295, 344, 347
BstV2I	GAAGAC	1 cut(s)	400
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	501, 667
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	4 cut(s)	298, 365, 415, 481
CviJI	RGCY	5 cut(s)	206, 287, 607, 643, 704
CviKI_1	RGCY	5 cut(s)	206, 287, 607, 643, 704
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	5 cut(s)	111, 351, 603, 639, 667
DpnI	GATC	3 cut(s)	106, 239, 675
DpnII	GATC	3 cut(s)	104, 237, 673
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	567
FaeI	CATG	4 cut(s)	301, 368, 418, 484
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	4 cut(s)	297, 364, 414, 480
FauNDI	CATATG	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	309, 333, 336
FokI	GGATG	2 cut(s)	488, 674
Fsp4HI	GCNGC	3 cut(s)	309, 333, 336
FspBI	CTAG	2 cut(s)	35, 288
GluI	GCNGC	3 cut(s)	309, 333, 336
GsaI	CCCAGC	1 cut(s)	704
HaeIII	GGCC	1 cut(s)	206
HgaI	GACGC	1 cut(s)	199
Hin1II	CATG	4 cut(s)	301, 368, 418, 484
HinfI	GANTC	2 cut(s)	378, 610
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	661
Hpy188III	TCNNGA	2 cut(s)	51, 314
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	277, 500
HpyCH4III	ACNGT	2 cut(s)	194, 454
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	422, 548, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 329
HpyF3I	CTNAG	5 cut(s)	111, 351, 603, 639, 667
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	301, 368, 418, 484
Kzo9I	GATC	3 cut(s)	104, 237, 673
LpnPI	CCDG	8 cut(s)	84, 148, 213, 220, 342, 375, 613, 714
Lsp1109I	GCAGC	3 cut(s)	295, 344, 347
MaeI	CTAG	2 cut(s)	35, 288
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	106, 239, 675
MboI	GATC	3 cut(s)	104, 237, 673
MboII	GAAGA	3 cut(s)	400, 478, 683
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	5 cut(s)	90, 116, 143, 339, 567
MluNI	TGGCCA	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	3 cut(s)	106, 444, 512
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	607
Mva1269I	GAATGC	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	293, 329
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	3 cut(s)	104, 237, 673
NlaIII	CATG	4 cut(s)	301, 368, 418, 484
NspI	RCATGY	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	378, 610
PkrI	GCNGC	3 cut(s)	310, 334, 337
PspFI	CCCAGC	1 cut(s)	700
PstNI	CAGNNNCTG	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SatI	GCNGC	3 cut(s)	309, 333, 336
Sau3AI	GATC	3 cut(s)	104, 237, 673
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	6 cut(s)	40, 81, 190, 536, 609, 706
Sse9I	AATT	5 cut(s)	90, 116, 143, 339, 567
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	35, 288
TaaI	ACNGT	2 cut(s)	194, 454
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	381
TasI	AATT	5 cut(s)	90, 116, 143, 339, 567
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	2 cut(s)	378, 610
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	3 cut(s)	308, 332, 335
TspDTI	ATGAA	4 cut(s)	4, 296, 461, 490
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	2 cut(s)	116, 567
XceI	RCATGY	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	2 cut(s)	35, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.