Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0015684

Physical Location & Seq

Genomic Coordinates Reverse (-)

23731853 .. 23733674

Gene Structure 1822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0173700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGCTCTGCAAGCAATAATAACCAATATCCATGGCCACCATATGAGACTTTCAAAGACTGTTCTCAAGGAATTTGCAGCATCTACTGCCCACAATGGTGTTACATGATCTTTGCTCCTCCGCCACCTTTCGAGTTCGGCGACAGCTCCGAGGAGAGCACCGGTATAAACTTCTCTCCTCTTATTATAGCCCTAATAGGCATTGTTGCAAGTGCTTGTATCCTTGTCACGTACTACTCCATCATATCCAAGTATTGCCGGCGACGAGCCGGTGCTTCTGCTAGGGATATTGACAGGGAGGCGAATCCGGCTAGTGAATCGTGGCAGGGCTCTGACACTGGTATGGAAGAGTCACTGATCAAGTCCATCAAGGTTCACAAGTATAAGAAGAATGATGGGGTGGTAGAAGGCACAGACTGTTCTGTTTGTTTGAGTGAGTTCCAAGAAAATGAAAACTTAAGGCTATTGCCAAAGTGCAGCCATGCTTTTCATGTTCCTTGTATTGATGCTTGGCTCAAGTCTCACTCTAGTTGTCCGCTTTGTCGGTCCAATATTGCTGCTTCTGCTATTGCTTTGGTGCCTCAACACCATAATCATCAGCAAGTATTGCCTTCTGTTGAAGAAAATCCACAGCAGGAGCTGATCAATCAATACCAGCATACAAGTGGTGGAAGTGTCTTGGTGGTTCAAGATAGGGAAGAAGAGGATTTTCGTGTTCAAAATAATGAGATCCATAGATTAAGGAGATCAGTTTCTTTGATTGAGGTGGTGAATTTACATGATGGTGAAGATGATGAGGACTTGGAAAACCAGATGGAGCATTTCCAGTTTTCTATGGATCAAAGCGAGCAATTTTCTATGCAGAATTTCGAGTTTTCTATGGAAACAGGGTCCTCAAAAGAAGCTGTGTTTGGGGAACAGAATTCAAAATTCAATAATATTAGAAGTGGAGTTTTCAGCATGGTAAAGGGTCCTCTTGGGCTGAAGAGATCTATTTCAACAGGGAGATTTGGGTTCACAAGGTATGCAAAGGAAAAGAGCTCTGTTATTCCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005355 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008515 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015154 GO:0015157 GO:0015749 GO:0015755 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034285 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1902334 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

352

Amino Acids

39.59

Weight (kDa)

5.27

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	139 - 182	2.5e-14	Ring finger domain
zf-RING_11	PF17123	139 - 168	1.5e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	140 - 181	4.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	140 - 181	9.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	145 - 182	1.7e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08940 FvH4_7g08940 FvH4_7g08940
prunus_persica	Prupe.2G118600_v2.0.a1 Prupe.2G118600_v2.0.a1
pyrus_communis	pycom07g07660
rosa_chinensis	RchiOBHm_Chr1g0344401
rosa_laevigata	RLG00000028900
rosa_multiflora	Rmu_sc0008332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309760
rosa_rugosa	Rorug01G0173700 Rorug01G0173800
rosa_samantha	Rh1AG190000 Rh1BG156900 Rh1CG175500
rosa_wichuraiana	Rw1G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	577
AciI	CCGC	2 cut(s)	122, 536
AclWI	GGATC	2 cut(s)	724, 846
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	5 cut(s)	72, 772, 865, 922, 929
AcuI	CTGAAG	1 cut(s)	1004
AfaI	GTAC	1 cut(s)	233
AflII	CTTAAG	1 cut(s)	457
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	7 cut(s)	55, 620, 689, 719, 927, 934, 999
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AleI	CACNNNNGTG	1 cut(s)	97
AluBI	AGCT	4 cut(s)	147, 640, 905, 1041
AluI	AGCT	4 cut(s)	147, 640, 905, 1041
Alw21I	GWGCWC	2 cut(s)	161, 1043
Alw26I	GTCTC	2 cut(s)	41, 525
AlwI	GGATC	2 cut(s)	724, 846
AlwNI	CAGNNNCTG	1 cut(s)	640
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	3 cut(s)	78, 477, 557
ApoI	RAATTY	5 cut(s)	72, 772, 865, 922, 929
AsiGI	ACCGGT	1 cut(s)	161
AspS9I	GGNCC	3 cut(s)	546, 891, 971
AsuHPI	GGTGA	2 cut(s)	781, 797
AvaII	GGWCC	3 cut(s)	546, 891, 971
BalI	TGGCCA	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	577
BanII	GRGCYC	3 cut(s)	8, 332, 1043
Bbv12I	GWGCWC	2 cut(s)	161, 1043
BbvI	GCAGC	3 cut(s)	90, 489, 544
BccI	CCATC	5 cut(s)	248, 374, 389, 776, 808
BciVI	GTATCC	1 cut(s)	230
BclI	TGATCA	2 cut(s)	357, 642
BcoDI	GTCTC	2 cut(s)	41, 525
BfaI	CTAG	3 cut(s)	282, 312, 528
BfrI	CTTAAG	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	989
BisI	GCNGC	3 cut(s)	79, 478, 558
BlsI	GCNGC	3 cut(s)	80, 479, 559
Bme18I	GGWCC	3 cut(s)	546, 891, 971
BmgT120I	GGNCC	3 cut(s)	546, 891, 971
BmiI	GGNNCC	3 cut(s)	579, 892, 972
BmsI	GCATC	2 cut(s)	90, 496
BpuEI	CTTGAG	2 cut(s)	51, 500
BsaAI	YACGTR	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	32, 150
BsaWI	WCCGGW	1 cut(s)	161
Bse118I	RCCGGY	3 cut(s)	161, 258, 269
Bse1I	ACTGG	2 cut(s)	343, 826
BseDI	CCNNGG	2 cut(s)	32, 150
BseNI	ACTGG	2 cut(s)	343, 826
BseRI	GAGGAG	3 cut(s)	108, 167, 168
BseXI	GCAGC	3 cut(s)	90, 489, 544
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	577
BshTI	ACCGGT	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	161, 1043
BsiSI	CCGG	4 cut(s)	162, 259, 270, 308
BsmAI	GTCTC	2 cut(s)	41, 525
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	4 cut(s)	8, 161, 332, 1043
Bsp143I	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	2 cut(s)	122, 536
BspANI	GGCC	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	579, 892, 972
BspPI	GGATC	2 cut(s)	724, 846
BspT107I	GGYRCC	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	457
BsrFI	RCCGGY	3 cut(s)	161, 258, 269
BsrI	ACTGG	2 cut(s)	343, 826
BssAI	RCCGGY	3 cut(s)	161, 258, 269
BssECI	CCNNGG	2 cut(s)	32, 150
BssMI	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	62, 419
Bst6I	CTCTTC	3 cut(s)	342, 696, 980
BstAFI	CTTAAG	1 cut(s)	457
BstAPI	GCANNNNNTGC	2 cut(s)	87, 607
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	13, 260, 848
BstDSI	CCRYGG	1 cut(s)	32
BstKTI	GATC	7 cut(s)	111, 360, 645, 732, 749, 841, 992
BstMAI	GTCTC	2 cut(s)	41, 525
BstMBI	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 87, 308, 563, 607
BstV1I	GCAGC	3 cut(s)	90, 489, 544
BstX2I	RGATCY	2 cut(s)	729, 989
BstYI	RGATCY	2 cut(s)	729, 989
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	336, 353
Cac8I	GCNNGC	3 cut(s)	13, 260, 848
CaiI	CAGNNNCTG	1 cut(s)	640
Cfr10I	RCCGGY	3 cut(s)	161, 258, 269
Cfr13I	GGNCC	3 cut(s)	546, 891, 971
Csp6I	GTAC	1 cut(s)	232
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	6 cut(s)	33, 106, 482, 491, 779, 961
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	7 cut(s)	110, 359, 644, 731, 748, 840, 991
DpnII	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	3 cut(s)	342, 696, 980
EarI	CTCTTC	3 cut(s)	342, 696, 980
EciI	GGCGGA	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	1041
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	3 cut(s)	8, 332, 1043
Eco47I	GGWCC	3 cut(s)	546, 891, 971
Eco53kI	GAGCTC	1 cut(s)	1041
Eco57I	CTGAAG	1 cut(s)	1004
EcoICRI	GAGCTC	1 cut(s)	1041
EcoO109I	RGGNCCY	2 cut(s)	891, 971
EcoRI	GAATTC	1 cut(s)	922
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	3 cut(s)	8, 332, 1043
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	6 cut(s)	36, 109, 485, 494, 782, 964
FatI	CATG	6 cut(s)	32, 105, 481, 490, 778, 960
FauNDI	CATATG	1 cut(s)	43
FbaI	TGATCA	2 cut(s)	357, 642
Fnu4HI	GCNGC	3 cut(s)	79, 478, 558
FriOI	GRGCYC	3 cut(s)	8, 332, 1043
Fsp4HI	GCNGC	3 cut(s)	79, 478, 558
FspBI	CTAG	3 cut(s)	282, 312, 528
GluI	GCNGC	3 cut(s)	79, 478, 558
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	4 cut(s)	162, 259, 270, 308
Hin1II	CATG	6 cut(s)	36, 109, 485, 494, 782, 964
HinfI	GANTC	3 cut(s)	304, 317, 350
HpaII	CCGG	4 cut(s)	162, 259, 270, 308
HphI	GGTGA	2 cut(s)	781, 797
Hpy166II	GTNNAC	2 cut(s)	376, 1017
Hpy188I	TCNGA	2 cut(s)	151, 334
Hpy188III	TCNNGA	1 cut(s)	689
Hpy8I	GTNNAC	2 cut(s)	376, 1017
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	2 cut(s)	401, 621
HpyCH4III	ACNGT	2 cut(s)	62, 419
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	6 cut(s)	11, 78, 209, 477, 862, 1028
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 87, 308, 563, 607
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	6 cut(s)	36, 109, 485, 494, 782, 964
KroI	GCCGGC	1 cut(s)	258
KroNI	GCCGGC	1 cut(s)	260
Ksp22I	TGATCA	2 cut(s)	357, 642
Kzo9I	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
LmnI	GCTCC	4 cut(s)	121, 152, 637, 817
Lsp1109I	GCAGC	3 cut(s)	90, 489, 544
LweI	GCATC	2 cut(s)	90, 496
MaeI	CTAG	3 cut(s)	282, 312, 528
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	3 cut(s)	101, 226, 351
MalI	GATC	7 cut(s)	110, 359, 644, 731, 748, 840, 991
MboI	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
MboII	GAAGA	7 cut(s)	359, 400, 632, 710, 713, 800, 997
MflI	RGATCY	2 cut(s)	729, 989
MhlI	GDGCHC	4 cut(s)	8, 161, 332, 1043
MlsI	TGGCCA	1 cut(s)	37
MluCI	AATT	7 cut(s)	72, 772, 851, 865, 922, 929, 1054
MluNI	TGGCCA	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	359
Mox20I	TGGCCA	1 cut(s)	37
MroNI	GCCGGC	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	37
MseI	TTAA	3 cut(s)	458, 740, 1057
MslI	CAYNNNNRTG	4 cut(s)	97, 341, 663, 783
Msp20I	TGGCCA	1 cut(s)	37
MspCI	CTTAAG	1 cut(s)	457
MspI	CCGG	4 cut(s)	162, 259, 270, 308
MwoI	GCNNNNNNNGC	5 cut(s)	12, 87, 308, 563, 607
NaeI	GCCGGC	1 cut(s)	260
NcoI	CCATGG	1 cut(s)	32
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
NgoMIV	GCCGGC	1 cut(s)	258
NlaIII	CATG	6 cut(s)	36, 109, 485, 494, 782, 964
NlaIV	GGNNCC	3 cut(s)	579, 892, 972
NmuCI	GTSAC	2 cut(s)	226, 351
OliI	CACNNNNGTG	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	304, 317
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	80, 479, 559
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	231
PpuMI	RGGWCCY	2 cut(s)	891, 971
Psp124BI	GAGCTC	1 cut(s)	1043
Psp5II	RGGWCCY	2 cut(s)	891, 971
PspN4I	GGNNCC	3 cut(s)	579, 892, 972
PspPI	GGNCC	3 cut(s)	546, 891, 971
PspPPI	RGGWCCY	2 cut(s)	891, 971
PstNI	CAGNNNCTG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	729, 989
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	4 cut(s)	97, 341, 663, 783
SacI	GAGCTC	1 cut(s)	1043
SaqAI	TTAA	3 cut(s)	458, 740, 1057
SatI	GCNGC	3 cut(s)	79, 478, 558
Sau3AI	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
Sau96I	GGNCC	3 cut(s)	546, 891, 971
SchI	GAGTC	1 cut(s)	359
SduI	GDGCHC	4 cut(s)	8, 161, 332, 1043
SetI	ASST	9 cut(s)	130, 149, 233, 375, 642, 768, 907, 1025, 1043
SfaNI	GCATC	2 cut(s)	90, 496
SinI	GGWCC	3 cut(s)	546, 891, 971
SmiMI	CAYNNNNRTG	4 cut(s)	97, 341, 663, 783
SmlI	CTYRAG	3 cut(s)	66, 457, 515
SmoI	CTYRAG	3 cut(s)	66, 457, 515
Sse9I	AATT	7 cut(s)	72, 772, 851, 865, 922, 929, 1054
SsiI	CCGC	2 cut(s)	122, 536
SspI	AATATT	2 cut(s)	553, 940
SspMI	CTAG	3 cut(s)	282, 312, 528
SstI	GAGCTC	1 cut(s)	1043
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	62, 419
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	2 cut(s)	132, 870
TaqII	GACCGA	1 cut(s)	534
TasI	AATT	7 cut(s)	72, 772, 851, 865, 922, 929, 1054
TfiI	GAWTC	2 cut(s)	304, 317
Tru1I	TTAA	3 cut(s)	458, 740, 1057
Tru9I	TTAA	3 cut(s)	458, 740, 1057
TscAI	CASTG	2 cut(s)	343, 360
TseFI	GTSAC	2 cut(s)	226, 351
TseI	GCWGC	3 cut(s)	78, 477, 557
Tsp45I	GTSAC	2 cut(s)	226, 351
TspDTI	ATGAA	2 cut(s)	465, 479
TspRI	CASTG	2 cut(s)	343, 360
Vha464I	CTTAAG	1 cut(s)	457
VpaK11BI	GGWCC	3 cut(s)	546, 891, 971
XapI	RAATTY	5 cut(s)	72, 772, 865, 922, 929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XspI	CTAG	3 cut(s)	282, 312, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.