Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0015684

Physical Location & Seq

Genomic Coordinates Reverse (-)

36170254 .. 36171702

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCAATAAGTTCGATTACCATTTTTGGGGTGCTAGGCAACATTATGTCAGGATTACTCTACCTTTCTCCTACCGTGGTCGTCGCCACTGTCAATGTTTTCGGTGCTGCTGTCGAGATTGTTTTCCTTACCATATTTCTACTTTTTGCACCACCAAGAATGAAGGTTAGGACTGCGATACTAGTTATAGTTCTGGATGTGGCATTTCCCGGAGCAACAATTTTACTTACTCACTTTCTGCTAGACGGAGATAAAAGGATCGATGTTGCTGGACTCTGGTGTGTAATCTTCAGCATGATTGCATATGCTTCCCCTCTCTCAGCTATGAAAACTGTGGTGGCGTTAAAGAGTGTGGAGTACATGCCTTTCCTTCTCTCTTTCATCTTTTTTCTTAATGGAGGAGTTTGGACAGTGTATGCCATTCTTGCGAAAGACTTGTTTGTTGGAATTCCAAATGGAAGTGGATTTTTACTTGGAACTGTTCAGCTGATTCTCTATTTCATATACTGGAAACCGAAGTCATCAAGGCAAGCATCTGACGGTTTAGAGGATCAACAGATCATAAGCGAAGCACTCATTTCTAATCCTTCACAGGGTAAAAGTGAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005355 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008515 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015154 GO:0015157 GO:0015749 GO:0015755 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034285 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1902334 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

203

Amino Acids

22.07

Weight (kDa)

6.71

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	91 - 173	5.7e-22	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08940 FvH4_7g08940 FvH4_7g08940
prunus_persica	Prupe.2G118600_v2.0.a1 Prupe.2G118600_v2.0.a1
pyrus_communis	pycom07g07660
rosa_chinensis	RchiOBHm_Chr1g0344401
rosa_laevigata	RLG00000028900
rosa_multiflora	Rmu_sc0008332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309760
rosa_rugosa	Rorug01G0173700 Rorug01G0173800
rosa_samantha	Rh1AG190000 Rh1BG156900 Rh1CG175500
rosa_wichuraiana	Rw1G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	266, 558
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	27, 593
AhlI	ACTAGT	1 cut(s)	181
AluBI	AGCT	2 cut(s)	323, 487
AluI	AGCT	2 cut(s)	323, 487
Alw21I	GWGCWC	1 cut(s)	609
AlwI	GGATC	2 cut(s)	266, 558
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	210
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	4 cut(s)	35, 182, 242, 610
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 593
Bse1I	ACTGG	1 cut(s)	512
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	27, 593
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	512
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	27, 593
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	3 cut(s)	258, 550, 558
BspCNI	CTCAG	1 cut(s)	332
BspDI	ATCGAT	1 cut(s)	261
BspPI	GGATC	2 cut(s)	266, 558
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	258, 550, 558
Bst4CI	ACNGT	6 cut(s)	76, 91, 334, 412, 481, 542
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	1 cut(s)	319
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	261, 553, 561
BstMBI	GATC	3 cut(s)	258, 550, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	87, 417
Cac8I	GCNNGC	1 cut(s)	531
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	295, 361
CviJI	RGCY	2 cut(s)	323, 487
CviKI_1	RGCY	2 cut(s)	323, 487
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	3 cut(s)	260, 552, 560
DpnII	GATC	3 cut(s)	258, 550, 558
Eco57I	CTGAAG	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	447
FaeI	CATG	2 cut(s)	298, 364
FatI	CATG	2 cut(s)	294, 360
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	4 cut(s)	35, 182, 242, 610
GluI	GCNGC	1 cut(s)	108
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	2 cut(s)	298, 364
HinfI	GANTC	2 cut(s)	273, 490
HpaII	CCGG	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	3 cut(s)	51, 115, 194
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	157, 380, 597
HpyCH4III	ACNGT	6 cut(s)	76, 91, 334, 412, 481, 542
HpyCH4V	TGCA	2 cut(s)	149, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	1 cut(s)	319
Hsp92II	CATG	2 cut(s)	298, 364
Kzo9I	GATC	3 cut(s)	258, 550, 558
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	7 cut(s)	36, 179, 223, 255, 262, 493, 578
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	4 cut(s)	35, 182, 242, 610
MalI	GATC	3 cut(s)	260, 552, 560
MboI	GATC	3 cut(s)	258, 550, 558
MboII	GAAGA	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	609
MluCI	AATT	2 cut(s)	219, 447
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	3 cut(s)	324, 392, 541
MseI	TTAA	2 cut(s)	344, 393
MspA1I	CMGCKG	1 cut(s)	487
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	425
NciI	CCSGG	1 cut(s)	210
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	3 cut(s)	258, 550, 558
NlaIII	CATG	2 cut(s)	298, 364
NspI	RCATGY	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	490
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PvuII	CAGCTG	1 cut(s)	487
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	344, 393
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	258, 550, 558
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	609
SetI	ASST	4 cut(s)	66, 168, 325, 489
SfaNI	GCATC	1 cut(s)	542
SpeI	ACTAGT	1 cut(s)	181
Sse9I	AATT	2 cut(s)	219, 447
SspMI	CTAG	4 cut(s)	35, 182, 242, 610
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	6 cut(s)	76, 91, 334, 412, 481, 542
TaqI	TCGA	3 cut(s)	14, 114, 261
TasI	AATT	2 cut(s)	219, 447
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	2 cut(s)	344, 393
Tru9I	TTAA	2 cut(s)	344, 393
TscAI	CASTG	2 cut(s)	94, 417
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	176, 341, 370, 490
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	94, 417
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	4 cut(s)	35, 182, 242, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.