Rw1G015660

Bidirectional sugar transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
34832549 .. 34834817
2269 bp
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UTR
Exon/CDS
Intron
Rw1G015660.1

Sequence Viewer

Length: 714 bp
ATGCTCTATGTAATTCGAAGCAACATTATGTCAGGATTACTCTACCTTTCTCCTACAAACGTGTTTGTGAGAATCGCAAAGCGTAGATCAACAGAGGAATTTGAGAGTATTCCTTATATTAGCAAACTGTTGAATGCTTACTTCTGGGTTTACTATGGATTTATTAAGCCTAACAGCGTGGTCGTCGCCACTGTCAATGTTTTCGGTGCTGCTGTCGAGATTGTTTTCCTTACCATATTTCTACTTTTTGCACCACCAAGAATGAAGGTTAGGACTGCGATACTAGTTATAGTTCTGGATGTGGCATTTCCCGGAGCAACAATTTTACTTACTCACTTTCTGCTAGACGGAGATAGAAGGATCGATGTTGCTGGACTCTGGTGTGTAATCTTCAGCATGATTGCATATGCTTCCCCTCTTTCAGCTATGAAAACTGTGGTGGCGTTAAAGAGTGTGGAGTACATGCCTTTCCTTCTCTCTTTCATCTTTTTTCTTAATGGAGGAGTTTGGACAGTGTATGCCATTCTTGCGAAAGACTTGTTTGTTGGAATTCCAAATGGAAGTGGATTTTTACTTGGAACTGCTCAGCTGATTCTCTATTTCATATACTGGAAACCGAAGTCATCAAGGCAAATATCTGACGGTTTAGAAGATCAACAGATCATAAGCGAAGCACTCATTTCTAATCCTTCGCAGGGTAAAAGTGAGCACTAG

Protein Analysis

237

Amino Acids

26.51

Weight (kDa)

9.12

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 8 - 85 1.3e-17 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 125 - 207 1.1e-21 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015684)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 2 cut(s) 98, 549
AcuI CTGAAG 1 cut(s) 376
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 695
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 1 cut(s) 133
AhlI ACTAGT 1 cut(s) 283
AluBI AGCT 2 cut(s) 425, 589
AluI AGCT 2 cut(s) 425, 589
Alw21I GWGCWC 1 cut(s) 711
AlwI GGATC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 2 cut(s) 98, 549
AsuC2I CCSGG 1 cut(s) 312
AsuII TTCGAA 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 1 cut(s) 196
BcnI CCSGG 1 cut(s) 312
BcuI ACTAGT 1 cut(s) 283
BfaI CTAG 3 cut(s) 284, 344, 712
BisI GCNGC 1 cut(s) 210
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 585
Bpu14I TTCGAA 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 312
Bsa29I ATCGAT 1 cut(s) 363
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse1I ACTGG 1 cut(s) 614
BseCI ATCGAT 1 cut(s) 363
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 1 cut(s) 614
BseRI GAGGAG 1 cut(s) 516
BseXI GCAGC 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 711
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 695
BsmI GAATGC 1 cut(s) 139
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 711
Bsp143I GATC 4 cut(s) 86, 360, 652, 660
Bsp1720I GCTNAGC 1 cut(s) 585
BspCNI CTCAG 1 cut(s) 598
BspDI ATCGAT 1 cut(s) 363
BspPI GGATC 1 cut(s) 368
BspT104I TTCGAA 1 cut(s) 16
BsrI ACTGG 1 cut(s) 614
BssMI GATC 4 cut(s) 86, 360, 652, 660
Bst4CI ACNGT 5 cut(s) 129, 193, 436, 514, 644
BstBI TTCGAA 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 4 cut(s) 89, 363, 655, 663
BstMBI GATC 4 cut(s) 86, 360, 652, 660
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 363
BsuTUI ATCGAT 1 cut(s) 363
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 189, 519
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 1 cut(s) 460
CviAII CATG 2 cut(s) 397, 463
CviJI RGCY 3 cut(s) 169, 425, 589
CviKI_1 RGCY 3 cut(s) 169, 425, 589
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 1 cut(s) 585
DpnI GATC 4 cut(s) 88, 362, 654, 662
DpnII GATC 4 cut(s) 86, 360, 652, 660
Eco57I CTGAAG 1 cut(s) 376
EcoRI GAATTC 1 cut(s) 549
FaeI CATG 2 cut(s) 400, 466
FatI CATG 2 cut(s) 396, 462
FauNDI CATATG 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 3 cut(s) 284, 344, 712
GluI GCNGC 1 cut(s) 210
HapII CCGG 1 cut(s) 312
Hin1II CATG 2 cut(s) 400, 466
HinfI GANTC 3 cut(s) 72, 375, 592
HpaII CCGG 1 cut(s) 312
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 640
Hpy188III TCNNGA 3 cut(s) 33, 217, 296
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 4 cut(s) 259, 351, 482, 699
HpyCH4III ACNGT 5 cut(s) 129, 193, 436, 514, 644
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 251, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 2 cut(s) 400, 466
Kzo9I GATC 4 cut(s) 86, 360, 652, 660
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 8 cut(s) 18, 130, 281, 325, 357, 364, 595, 680
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 3 cut(s) 284, 344, 712
MaeII ACGT 1 cut(s) 60
MalI GATC 4 cut(s) 88, 362, 654, 662
MboI GATC 4 cut(s) 86, 360, 652, 660
MboII GAAGA 2 cut(s) 382, 662
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 4 cut(s) 12, 98, 321, 549
MlyI GAGTC 1 cut(s) 369
MmeI TCCRAC 1 cut(s) 526
MnlI CCTC 3 cut(s) 88, 426, 494
MseI TTAA 3 cut(s) 165, 446, 495
MspA1I CMGCKG 1 cut(s) 589
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 527
NciI CCSGG 1 cut(s) 312
NdeI CATATG 1 cut(s) 406
NdeII GATC 4 cut(s) 86, 360, 652, 660
NlaIII CATG 2 cut(s) 400, 466
NspI RCATGY 1 cut(s) 466
NspV TTCGAA 1 cut(s) 16
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 72, 592
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 589
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SaqAI TTAA 3 cut(s) 165, 446, 495
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 4 cut(s) 86, 360, 652, 660
SchI GAGTC 1 cut(s) 369
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 711
SetI ASST 5 cut(s) 48, 63, 270, 427, 591
SfuI TTCGAA 1 cut(s) 16
SpeI ACTAGT 1 cut(s) 283
Sse9I AATT 4 cut(s) 12, 98, 321, 549
SspMI CTAG 3 cut(s) 284, 344, 712
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 5 cut(s) 129, 193, 436, 514, 644
TaiI ACGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 16, 216, 363
TasI AATT 4 cut(s) 12, 98, 321, 549
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 2 cut(s) 72, 592
Tru1I TTAA 3 cut(s) 165, 446, 495
Tru9I TTAA 3 cut(s) 165, 446, 495
TscAI CASTG 2 cut(s) 196, 519
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 4 cut(s) 278, 443, 472, 592
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 2 cut(s) 196, 519
XapI RAATTY 2 cut(s) 98, 549
XceI RCATGY 1 cut(s) 466
XspI CTAG 3 cut(s) 284, 344, 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.