RLG00000028900

Bidirectional sugar transporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
30067320 .. 30068810
1491 bp
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UTR
Exon/CDS
Intron
RLM00000028900

Sequence Viewer

Length: 567 bp
ATGGCAATAAGTTCGATTACCATTTTTGGGGTGCTAGGCAACATTATGTCAGGATTACTCTACCTTTCTCCTACAAACGTGTTTGTGAGAATCGCAAAGCGTAGATCAACTGAGGAATTTGAGAGTATTCCTTATATTAGCAAACTGTTGAATGCTTACTTCTGGGTTTACTATGGATTTATTAAGCCTAACAGCGTGGTCGTCGCCACTGTCAATGTTTTCGGTGCTGCTGTCGAGATTGTTTTCCTTACCATATTTCTACTTTTTGCACCACCAAGAATGAAGAAAACTGTGGTGGCGTTAAAGAGTGTGGAGTACATGCCTTTCCTTCTCTCTTTCATCTTTTTTCTTAATGGAGGAGTTTGGACAGTGTATGCCATTCTTGCGAAAGACTTGTTTGTTGGAATTCCAAATGGAAGTGGATTTTTACTTGGAACTGCTCAGCTGATTCTCTATTTCATATACTGGAAACCGAAGTCATCAATGCAAGCATCTGACGGTTTAGAGGATCAACAGATATGCGAAGCACTCATTTCTAATCCTTCACAGGGTAAAAGTGAGCACTAG

Protein Analysis

189

Amino Acids

20.95

Weight (kDa)

8.95

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 8 - 91 1.2e-19 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 84 - 159 2.6e-15 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

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Publication-ready

Orthologous Genes (Group: OG0015684)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 516
AcsI RAATTY 2 cut(s) 116, 405
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 2 cut(s) 27, 548
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 1 cut(s) 445
AluI AGCT 1 cut(s) 445
Alw21I GWGCWC 1 cut(s) 564
AlwI GGATC 1 cut(s) 516
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 2 cut(s) 116, 405
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 1 cut(s) 214
BcgI CGANNNNNNTGC 1 cut(s) 28
BfaI CTAG 2 cut(s) 35, 565
BisI GCNGC 1 cut(s) 228
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 229
BmsI GCATC 1 cut(s) 500
Bpu1102I GCTNAGC 1 cut(s) 441
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 548
Bse1I ACTGG 1 cut(s) 470
BseLI CCNNNNNNNGG 2 cut(s) 27, 548
BseMII CTCAG 2 cut(s) 102, 455
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 564
BslI CCNNNNNNNGG 2 cut(s) 27, 548
BsmI GAATGC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 564
Bsp143I GATC 2 cut(s) 104, 508
Bsp1720I GCTNAGC 1 cut(s) 441
BspCNI CTCAG 2 cut(s) 103, 454
BspPI GGATC 1 cut(s) 516
BsrI ACTGG 1 cut(s) 470
BssMI GATC 2 cut(s) 104, 508
Bst4CI ACNGT 5 cut(s) 147, 211, 292, 370, 500
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 2 cut(s) 111, 441
BstKTI GATC 2 cut(s) 107, 511
BstMBI GATC 2 cut(s) 104, 508
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNSI RCATGY 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 207, 375
Cac8I GCNNGC 1 cut(s) 489
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 319
CviJI RGCY 2 cut(s) 187, 445
CviKI_1 RGCY 2 cut(s) 187, 445
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 111, 441
DpnI GATC 2 cut(s) 106, 510
DpnII GATC 2 cut(s) 104, 508
EcoRI GAATTC 1 cut(s) 405
FaeI CATG 1 cut(s) 322
FaiI YATR 9 cut(s) 47, 135, 174, 254, 320, 375, 461, 463, 520
FatI CATG 1 cut(s) 318
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 2 cut(s) 35, 565
GluI GCNGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 322
HinfI GANTC 2 cut(s) 90, 448
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 2 cut(s) 51, 235
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 338, 552
HpyCH4III ACNGT 5 cut(s) 147, 211, 292, 370, 500
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 269, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 111, 441
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 322
Kzo9I GATC 2 cut(s) 104, 508
LpnPI CCDG 4 cut(s) 36, 148, 451, 533
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 500
MaeI CTAG 2 cut(s) 35, 565
MaeII ACGT 1 cut(s) 78
MalI GATC 2 cut(s) 106, 510
MboI GATC 2 cut(s) 104, 508
MboII GAAGA 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 2 cut(s) 116, 405
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 3 cut(s) 106, 350, 499
MseI TTAA 3 cut(s) 183, 302, 351
MspA1I CMGCKG 1 cut(s) 445
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 383
NdeII GATC 2 cut(s) 104, 508
NlaIII CATG 1 cut(s) 322
NspI RCATGY 1 cut(s) 322
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 90, 448
PkrI GCNGC 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 3 cut(s) 183, 302, 351
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 104, 508
SduI GDGCHC 1 cut(s) 564
SetI ASST 3 cut(s) 66, 81, 447
SfaNI GCATC 1 cut(s) 500
Sse9I AATT 2 cut(s) 116, 405
SspMI CTAG 2 cut(s) 35, 565
TaaI ACNGT 5 cut(s) 147, 211, 292, 370, 500
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 14, 234
TasI AATT 2 cut(s) 116, 405
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 2 cut(s) 90, 448
Tru1I TTAA 3 cut(s) 183, 302, 351
Tru9I TTAA 3 cut(s) 183, 302, 351
TscAI CASTG 2 cut(s) 214, 375
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 296, 328, 448
TspRI CASTG 2 cut(s) 214, 375
XapI RAATTY 2 cut(s) 116, 405
XceI RCATGY 1 cut(s) 322
XspI CTAG 2 cut(s) 35, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.