Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015684

Physical Location & Seq

Genomic Coordinates Reverse (-)

38669325 .. 38670773

Gene Structure 1449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG175500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCAATAAGTTCGATTACCATTTTTGGGGTGCTAGGCAACATTATGTCAGGATTACTCTACCTTTCTCCTACAAACGTGTTTGTGAGAATCGCAAAGCGTAGATCAACAGAGGAATTTGAGAGTATTCCTTATATTAGCAAACTGTTGAATGCTTACTTCTGGGTTTACTATGGGTTTATTAAGCCTAACAGCGTGGTCGTCGCCACTGTCAATGTTTTCGGTGCTGCTGTCGAGATTGTTTTCCTTACCATATTTCTACTTTTTGCACCACCAAGAATGAAGATTCCAAATGGAAGTGGATTTTTACTTGGAACTGTTCAGCTGATTCTCTATTTCATATACTGGAAACCGAAGTCATCAAGGCAAGCATCTGACGGTTTAGAGGATCAACAGATCATAAGCGAAGCACTCATTTCTAATCCTTCACAGGGTAAAAGTGAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005355 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008515 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015154 GO:0015157 GO:0015749 GO:0015755 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034285 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1902334 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

149

Amino Acids

16.62

Weight (kDa)

9.22

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	8 - 91	9e-20	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08940 FvH4_7g08940 FvH4_7g08940
prunus_persica	Prupe.2G118600_v2.0.a1 Prupe.2G118600_v2.0.a1
pyrus_communis	pycom07g07660
rosa_chinensis	RchiOBHm_Chr1g0344401
rosa_laevigata	RLG00000028900
rosa_multiflora	Rmu_sc0008332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309760
rosa_rugosa	Rorug01G0173700 Rorug01G0173800
rosa_samantha	Rh1AG190000 Rh1BG156900 Rh1CG175500
rosa_wichuraiana	Rw1G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	27, 431
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	214
BcgI	CGANNNNNNTGC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	35, 448
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmsI	GCATC	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 431
Bse1I	ACTGG	1 cut(s)	350
BseLI	CCNNNNNNNGG	2 cut(s)	27, 431
BseNI	ACTGG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	27, 431
BsmI	GAATGC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	3 cut(s)	104, 388, 396
BspPI	GGATC	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	350
BssMI	GATC	3 cut(s)	104, 388, 396
Bst4CI	ACNGT	4 cut(s)	147, 211, 319, 380
BstC8I	GCNNGC	1 cut(s)	369
BstKTI	GATC	3 cut(s)	107, 391, 399
BstMBI	GATC	3 cut(s)	104, 388, 396
BstV1I	GCAGC	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	369
CviJI	RGCY	2 cut(s)	187, 325
CviKI_1	RGCY	2 cut(s)	187, 325
DpnI	GATC	3 cut(s)	106, 390, 398
DpnII	GATC	3 cut(s)	104, 388, 396
FaiI	YATR	7 cut(s)	47, 135, 174, 254, 341, 343, 401
Fnu4HI	GCNGC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	35, 448
GluI	GCNGC	1 cut(s)	228
HinfI	GANTC	3 cut(s)	90, 286, 328
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	2 cut(s)	51, 235
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	4 cut(s)	147, 211, 319, 380
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	104, 388, 396
LpnPI	CCDG	4 cut(s)	36, 148, 331, 416
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	380
MaeI	CTAG	2 cut(s)	35, 448
MaeII	ACGT	1 cut(s)	78
MalI	GATC	3 cut(s)	106, 390, 398
MboI	GATC	3 cut(s)	104, 388, 396
MboII	GAAGA	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	1 cut(s)	116
MnlI	CCTC	2 cut(s)	106, 379
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	157
NdeII	GATC	3 cut(s)	104, 388, 396
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	3 cut(s)	90, 286, 328
PkrI	GCNGC	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	104, 388, 396
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	3 cut(s)	66, 81, 327
SfaNI	GCATC	1 cut(s)	380
Sse9I	AATT	1 cut(s)	116
SspMI	CTAG	2 cut(s)	35, 448
TaaI	ACNGT	4 cut(s)	147, 211, 319, 380
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	14, 234
TasI	AATT	1 cut(s)	116
TfiI	GAWTC	3 cut(s)	90, 286, 328
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	296, 328
TspRI	CASTG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	116
XspI	CTAG	2 cut(s)	35, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.