Rroxscaffold_4G00309760

Bidirectional sugar transporter

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
31594047 .. 31596257
2211 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00309760.1

Sequence Viewer

Length: 708 bp
ATGGCAATAAGTTCGATTACCATTTTTGGGGTGCTAGGCAACATTATGTCAGGATTACTCTACCTTTCTCCTACAAACGTGTTTGTGAGAATTGCAAAGCGTAGATCAACTGAGGAATTTGAGAGTATTCCTTATATTAGCAAACTGTTGAATGCTTACTTCTGGGTTTACTATGGATTTATTAAGCCTAACAGCGTGGTCGTCGCCACTGTCAATGTTTTCGGTGCTGCTGTCGAGATTGTTTTCCTTACCATATTTCTACTTTTTGCACCACCAAGAATGAAGGTTAGGACTGCGATACTAGTTATAGTTCTGGATGTGGCATTTCCCGGAGCAACAATTTTACTTACTCACTTTCTGCTAGACGGAGATAAAAGGATCGATGTTGCTGGACTATGGTGTGTAATCTTCAGCATGATTGCATATGCTTCCCCTCTTTCAGCTATGAAAACTGTGGTGGCGTTACAGAGTGTGGAGTATATGCCTTTCCTTCTCTCTTTCATCTTTTTTCTTAATGGAGGAGTTTGGACAGTGTATGCCATTCTTGCCAAAGACTTGTTTGTTGGAATTCCAAATGGAAGTGGATTTTTACTTGGAACTGCTCAGCTGATTCTCTATTTTATATACTGGAAACCGAAGTCATCAAAGCAAGCATCGGACGGTTTAGAGGATCAACAGATAAGCGAATCACTCATTTCTAATCCTTGA

Protein Analysis

235

Amino Acids

25.99

Weight (kDa)

8.59

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 8 - 91 2.2e-19 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 131 - 213 5.8e-21 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015684)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 386, 678
AcsI RAATTY 2 cut(s) 116, 567
AcuI CTGAAG 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 27
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 151
AhlI ACTAGT 1 cut(s) 301
AluBI AGCT 2 cut(s) 443, 607
AluI AGCT 2 cut(s) 443, 607
AlwI GGATC 2 cut(s) 386, 678
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 2 cut(s) 116, 567
AsuC2I CCSGG 1 cut(s) 330
BbvI GCAGC 1 cut(s) 214
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 330
BcuI ACTAGT 1 cut(s) 301
BfaI CTAG 3 cut(s) 35, 302, 362
BisI GCNGC 1 cut(s) 228
BlpI GCTNAGC 1 cut(s) 603
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 662
Bpu1102I GCTNAGC 1 cut(s) 603
BpuMI CCSGG 1 cut(s) 330
Bsa29I ATCGAT 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 632
BseCI ATCGAT 1 cut(s) 381
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 102, 617
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 1 cut(s) 214
BshVI ATCGAT 1 cut(s) 381
BsiSI CCGG 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 27
BsmI GAATGC 1 cut(s) 157
Bsp143I GATC 3 cut(s) 104, 378, 670
Bsp1720I GCTNAGC 1 cut(s) 603
BspCNI CTCAG 2 cut(s) 103, 616
BspDI ATCGAT 1 cut(s) 381
BspPI GGATC 2 cut(s) 386, 678
BsrI ACTGG 1 cut(s) 632
BssMI GATC 3 cut(s) 104, 378, 670
Bst4CI ACNGT 5 cut(s) 147, 211, 454, 532, 662
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 2 cut(s) 111, 603
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 3 cut(s) 107, 381, 673
BstMBI GATC 3 cut(s) 104, 378, 670
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstSCI CCNGG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 214
Bsu15I ATCGAT 1 cut(s) 381
BsuTUI ATCGAT 1 cut(s) 381
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 207, 537
Cac8I GCNNGC 1 cut(s) 651
ClaI ATCGAT 1 cut(s) 381
CviAII CATG 1 cut(s) 415
CviJI RGCY 3 cut(s) 187, 443, 607
CviKI_1 RGCY 3 cut(s) 187, 443, 607
DdeI CTNAG 2 cut(s) 111, 603
DpnI GATC 3 cut(s) 106, 380, 672
DpnII GATC 3 cut(s) 104, 378, 670
Eco57I CTGAAG 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 567
FaeI CATG 1 cut(s) 418
FatI CATG 1 cut(s) 414
FauNDI CATATG 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 3 cut(s) 35, 302, 362
GluI GCNGC 1 cut(s) 228
HapII CCGG 1 cut(s) 330
Hin1II CATG 1 cut(s) 418
HinfI GANTC 2 cut(s) 610, 686
HpaII CCGG 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 658
Hpy188III TCNNGA 3 cut(s) 51, 235, 314
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 277, 500
HpyCH4III ACNGT 5 cut(s) 147, 211, 454, 532, 662
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 95, 269, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 2 cut(s) 111, 603
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 418
Kzo9I GATC 3 cut(s) 104, 378, 670
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 6 cut(s) 36, 148, 299, 343, 375, 613
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 662
MaeI CTAG 3 cut(s) 35, 302, 362
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 462
MalI GATC 3 cut(s) 106, 380, 672
MboI GATC 3 cut(s) 104, 378, 670
MboII GAAGA 1 cut(s) 400
MluCI AATT 4 cut(s) 90, 116, 339, 567
MmeI TCCRAC 1 cut(s) 544
MnlI CCTC 4 cut(s) 106, 444, 512, 661
MseI TTAA 2 cut(s) 183, 513
MspA1I CMGCKG 1 cut(s) 607
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 545
NciI CCSGG 1 cut(s) 330
NdeI CATATG 1 cut(s) 424
NdeII GATC 3 cut(s) 104, 378, 670
NlaIII CATG 1 cut(s) 418
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 610, 686
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 607
SaqAI TTAA 2 cut(s) 183, 513
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 3 cut(s) 104, 378, 670
ScrFI CCNGG 1 cut(s) 330
SetI ASST 5 cut(s) 66, 81, 288, 445, 609
SfaNI GCATC 1 cut(s) 662
SpeI ACTAGT 1 cut(s) 301
Sse9I AATT 4 cut(s) 90, 116, 339, 567
SspMI CTAG 3 cut(s) 35, 302, 362
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 5 cut(s) 147, 211, 454, 532, 662
TaiI ACGT 1 cut(s) 81
TaqI TCGA 3 cut(s) 14, 234, 381
TasI AATT 4 cut(s) 90, 116, 339, 567
TfiI GAWTC 2 cut(s) 610, 686
Tru1I TTAA 2 cut(s) 183, 513
Tru9I TTAA 2 cut(s) 183, 513
TscAI CASTG 2 cut(s) 214, 537
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 296, 461, 490
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 2 cut(s) 214, 537
XapI RAATTY 2 cut(s) 116, 567
XspI CTAG 3 cut(s) 35, 302, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.