Rh1BG156900

Bidirectional sugar transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
25498606 .. 25501312
2707 bp
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UTR
Exon/CDS
Intron
Rh1BG156900.1

Sequence Viewer

Length: 624 bp
ATGGCAATAAGTTCGATTACCATTTTTGGGGTGCTAGGCAACATTATGTCAGGATTACTCTACCTTTCTCCTACAAACGTGTTTGTGAGAATCGCAAAGCGTAGATCAACAGAGGAATTTGAGAGTATTCCTTATATTAGCAAACTGTTGAATGCTTACTTCTGGGTTTACTATGGATTTATTAAGCCTAACAGCGTGGTCGTCGCCACTGTCAATGTTTTCGGTGCTGCTGTCGAGATTGTTTTCCTTACCATATTTCTACTTTTTGCACCACCAAGAATGAAGGTTAGGACTGCGATACTAGTTATAGTTCTGGATGTGGCATTTCCCGGAGCAACAATTTTACTTACTCACTTTCTGCTAGACGGAGATAAAAGGATCGATGTTGCTGGACTCTGGTGTGTAATCTTCAGCATGATTGCATATGCTTCCCCTCTTTCAGCTATGAAAACTGTGGTGGCGTTAAAGAGTGTGGAGTACATGCCTTTCCTTCTCTCTTTCATCTTTTTTCTTAATGGAGGAGTTTGGACAGTGTATGCCATTCTTGCGAAAGACTTGTTTGTTGGAGTAAGTTCTTATCCAACATCGATCTACAACCTGCAAAAGCCATTAATTAATGGTTGA

Protein Analysis

207

Amino Acids

22.93

Weight (kDa)

9.32

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 8 - 91 1.7e-19 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 131 - 190 2e-13 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015684)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 606
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 394
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 1 cut(s) 27
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 151
AhlI ACTAGT 1 cut(s) 301
AluBI AGCT 1 cut(s) 443
AluI AGCT 1 cut(s) 443
AlwI GGATC 1 cut(s) 386
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 116
AseI ATTAAT 2 cut(s) 611, 615
AsuC2I CCSGG 1 cut(s) 330
BbvI GCAGC 1 cut(s) 214
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 330
BcuI ACTAGT 1 cut(s) 301
BfaI CTAG 3 cut(s) 35, 302, 362
BfuAI ACCTGC 1 cut(s) 606
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 330
Bsa29I ATCGAT 2 cut(s) 381, 587
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseCI ATCGAT 2 cut(s) 381, 587
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 1 cut(s) 214
BshVI ATCGAT 2 cut(s) 381, 587
BsiSI CCGG 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 27
BsmI GAATGC 1 cut(s) 157
Bsp143I GATC 3 cut(s) 104, 378, 588
BspDI ATCGAT 2 cut(s) 381, 587
BspMI ACCTGC 1 cut(s) 606
BspPI GGATC 1 cut(s) 386
BssMI GATC 3 cut(s) 104, 378, 588
Bst4CI ACNGT 4 cut(s) 147, 211, 454, 532
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 3 cut(s) 107, 381, 591
BstMBI GATC 3 cut(s) 104, 378, 588
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 214
Bsu15I ATCGAT 2 cut(s) 381, 587
BsuTUI ATCGAT 2 cut(s) 381, 587
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 207, 537
BveI ACCTGC 1 cut(s) 606
ClaI ATCGAT 2 cut(s) 381, 587
Csp6I GTAC 1 cut(s) 478
CviAII CATG 2 cut(s) 415, 481
CviJI RGCY 3 cut(s) 187, 443, 607
CviKI_1 RGCY 3 cut(s) 187, 443, 607
CviQI GTAC 1 cut(s) 478
DpnI GATC 3 cut(s) 106, 380, 590
DpnII GATC 3 cut(s) 104, 378, 588
Eco57I CTGAAG 1 cut(s) 394
FaeI CATG 2 cut(s) 418, 484
FatI CATG 2 cut(s) 414, 480
FauNDI CATATG 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 3 cut(s) 35, 302, 362
GluI GCNGC 1 cut(s) 228
HapII CCGG 1 cut(s) 330
Hin1II CATG 2 cut(s) 418, 484
HinfI GANTC 2 cut(s) 90, 393
HpaII CCGG 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 169
Hpy188III TCNNGA 3 cut(s) 51, 235, 314
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 277, 500
HpyCH4III ACNGT 4 cut(s) 147, 211, 454, 532
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 269, 422, 601
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 418, 484
Kzo9I GATC 3 cut(s) 104, 378, 588
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 7 cut(s) 36, 148, 299, 343, 375, 382, 611
Lsp1109I GCAGC 1 cut(s) 214
MaeI CTAG 3 cut(s) 35, 302, 362
MaeII ACGT 1 cut(s) 78
MalI GATC 3 cut(s) 106, 380, 590
MboI GATC 3 cut(s) 104, 378, 588
MboII GAAGA 1 cut(s) 400
MluCI AATT 3 cut(s) 116, 339, 612
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 2 cut(s) 544, 605
MnlI CCTC 3 cut(s) 106, 444, 512
MseI TTAA 5 cut(s) 183, 464, 513, 611, 615
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 545
NciI CCSGG 1 cut(s) 330
NdeI CATATG 1 cut(s) 424
NdeII GATC 3 cut(s) 104, 378, 588
NlaIII CATG 2 cut(s) 418, 484
NspI RCATGY 1 cut(s) 484
PacI TTAATTAA 1 cut(s) 615
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
PshBI ATTAAT 2 cut(s) 611, 615
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SaqAI TTAA 5 cut(s) 183, 464, 513, 611, 615
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 3 cut(s) 104, 378, 588
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 330
SetI ASST 5 cut(s) 66, 81, 288, 445, 600
SpeI ACTAGT 1 cut(s) 301
Sse9I AATT 3 cut(s) 116, 339, 612
SspMI CTAG 3 cut(s) 35, 302, 362
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 4 cut(s) 147, 211, 454, 532
TaiI ACGT 1 cut(s) 81
TaqI TCGA 4 cut(s) 14, 234, 381, 587
TasI AATT 3 cut(s) 116, 339, 612
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 5 cut(s) 183, 464, 513, 611, 615
Tru9I TTAA 5 cut(s) 183, 464, 513, 611, 615
TscAI CASTG 2 cut(s) 214, 537
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 296, 461, 490
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 2 cut(s) 214, 537
VspI ATTAAT 2 cut(s) 611, 615
XapI RAATTY 1 cut(s) 116
XceI RCATGY 1 cut(s) 484
XspI CTAG 3 cut(s) 35, 302, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.