Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015684

Physical Location & Seq

Genomic Coordinates Reverse (-)

17666417 .. 17669913

Gene Structure 3497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G118600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCAATAAATTTCGTTGTCATTTTTGGGTTGCTAGGTAACATTATGTCGGGATTAGTCTACGTCTCTCCTGCAAATGTGTTCGTGCGAATTCTGAGGCGTAGATCAACTGAGGAATTTGAGAGTGTTCCTTATGTTAGCAAGTTATTGAACGCCTATTTCTGGGTTTACTATGGACTTATTAAGCCAAATAGCGTGCTGGTGGCCACGGTCAATATTTTTGGTGCCGTTGTGGAGATCGTTTTTCTTACCATATTTCTACTTTTTGCACCACCAAGAATGAAGGCCAGGACTGCCATGCTTGTTGTAGCTCTTAATGTAGCCTTTCCAGCAGCAGCAATTTTGCTTACTCAGTTTCTGCTACATGGAGATCAGCGGATCGACGCAGCAGGACTTTTGTGTTCCGTCTTCAGCATGATTGCATATGCTTCCCCTCTTTCAGCCATGAAAACTGTGGTGGCACTAAAGAGTGTGGAATACATGCCTTTTCTTCTCTCATTCATCCTTTTCCTCAATGGAGGGATTTGGACACTCTATGCCATTCTTGCAAAAGACTTGTTTGTTGGAATTCCAAATGGGACTGGATTTTTATTTGGTACTGCTCAGCTGATTCTCTATGCAATATACTGGAAACCATCTAAGCCGCCCAAGCAAGTATCTGATGATTTGGAGGATCAACAACACATCAGAGAAGCACTCATCCCAGCTTCAAAACCCATCATTGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005355 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008515 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015154 GO:0015157 GO:0015749 GO:0015755 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034285 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1902334 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

244

Amino Acids

26.86

Weight (kDa)

9.14

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08940 FvH4_7g08940 FvH4_7g08940
prunus_persica	Prupe.2G118600_v2.0.a1 Prupe.2G118600_v2.0.a1
pyrus_communis	pycom07g07660
rosa_chinensis	RchiOBHm_Chr1g0344401
rosa_laevigata	RLG00000028900
rosa_multiflora	Rmu_sc0008332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309760
rosa_rugosa	Rorug01G0173700 Rorug01G0173800
rosa_samantha	Rh1AG190000 Rh1BG156900 Rh1CG175500
rosa_wichuraiana	Rw1G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	2 cut(s)	376, 644
AclWI	GGATC	2 cut(s)	386, 681
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	4 cut(s)	10, 90, 116, 567
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	151, 711
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	311, 607, 707
AluI	AGCT	3 cut(s)	311, 607, 707
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	386, 681
AlwNI	CAGNNNCTG	1 cut(s)	358
AoxI	GGCC	2 cut(s)	204, 285
ApeKI	GCWGC	3 cut(s)	332, 335, 386
ApoI	RAATTY	4 cut(s)	10, 90, 116, 567
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	400
BbvI	GCAGC	3 cut(s)	344, 347, 398
BccI	CCATC	2 cut(s)	643, 725
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	4 cut(s)	333, 336, 387, 644
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	4 cut(s)	334, 337, 388, 645
Bme1390I	CCNGG	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	400
BplI	GAGNNNNNCTC	2 cut(s)	681, 713
Bpu1102I	GCTNAGC	1 cut(s)	603
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	586, 632
Bse3DI	GCAATG	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	501, 699
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	4 cut(s)	86, 102, 365, 617
BseNI	ACTGG	2 cut(s)	586, 632
BseXI	GCAGC	3 cut(s)	344, 347, 398
BseYI	CCCAGC	1 cut(s)	703
BshFI	GGCC	2 cut(s)	206, 287
BshNI	GGYRCC	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	592
BsnI	GGCC	2 cut(s)	206, 287
Bsp143I	GATC	5 cut(s)	104, 237, 370, 378, 673
Bsp1720I	GCTNAGC	1 cut(s)	603
BspACI	CCGC	2 cut(s)	376, 644
BspANI	GGCC	2 cut(s)	206, 287
BspCNI	CTCAG	4 cut(s)	87, 103, 364, 616
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	2 cut(s)	386, 681
BspT107I	GGYRCC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	586, 632
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	5 cut(s)	104, 237, 370, 378, 673
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	211, 454
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	5 cut(s)	95, 111, 351, 603, 639
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	501, 699
BstKTI	GATC	5 cut(s)	107, 240, 373, 381, 676
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	5 cut(s)	104, 237, 370, 378, 673
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 329, 545, 649
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	3 cut(s)	344, 347, 398
BstV2I	GAAGAC	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	206, 287
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	501, 699
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	358
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	5 cut(s)	298, 365, 415, 445, 481
CviJI	RGCY	9 cut(s)	187, 206, 287, 311, 323, 443, 607, 643, 707
CviKI_1	RGCY	9 cut(s)	187, 206, 287, 311, 323, 443, 607, 643, 707
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	5 cut(s)	95, 111, 351, 603, 639
DpnI	GATC	5 cut(s)	106, 239, 372, 380, 675
DpnII	GATC	5 cut(s)	104, 237, 370, 378, 673
EaeI	YGGCCR	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	394
EcoRI	GAATTC	2 cut(s)	90, 567
EcoRII	CCWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	5 cut(s)	301, 368, 418, 448, 484
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	5 cut(s)	297, 364, 414, 444, 480
FauNDI	CATATG	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	333, 336, 387, 644
FokI	GGATG	2 cut(s)	488, 686
Fsp4HI	GCNGC	4 cut(s)	333, 336, 387, 644
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	4 cut(s)	333, 336, 387, 644
GsaI	CCCAGC	1 cut(s)	707
HaeIII	GGCC	2 cut(s)	206, 287
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	5 cut(s)	301, 368, 418, 448, 484
HinfI	GANTC	1 cut(s)	610
Hpy166II	GTNNAC	2 cut(s)	61, 169
Hpy188I	TCNGA	3 cut(s)	96, 661, 689
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	2 cut(s)	61, 169
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	211, 454
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	6 cut(s)	74, 269, 422, 548, 620, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 329, 545, 649
HpyF3I	CTNAG	5 cut(s)	95, 111, 351, 603, 639
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	301, 368, 418, 448, 484
Kzo9I	GATC	5 cut(s)	104, 237, 370, 378, 673
Lsp1109I	GCAGC	3 cut(s)	344, 347, 398
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	5 cut(s)	106, 239, 372, 380, 675
MboI	GATC	5 cut(s)	104, 237, 370, 378, 673
MboII	GAAGA	2 cut(s)	400, 482
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	5 cut(s)	10, 90, 116, 339, 567
MluNI	TGGCCA	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	6 cut(s)	90, 106, 444, 512, 521, 664
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	2 cut(s)	183, 315
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	2 cut(s)	376, 607
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	4 cut(s)	293, 329, 545, 649
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	5 cut(s)	104, 237, 370, 378, 673
NlaIII	CATG	5 cut(s)	301, 368, 418, 448, 484
NlaIV	GGNNCC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	4 cut(s)	334, 337, 388, 645
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	183, 315
SatI	GCNGC	4 cut(s)	333, 336, 387, 644
Sau3AI	GATC	5 cut(s)	104, 237, 370, 378, 673
ScrFI	CCNGG	1 cut(s)	289
SetI	ASST	5 cut(s)	40, 66, 313, 609, 709
Sse9I	AATT	5 cut(s)	10, 90, 116, 339, 567
SsiI	CCGC	2 cut(s)	376, 644
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	211, 454
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	381
TasI	AATT	5 cut(s)	10, 90, 116, 339, 567
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	2 cut(s)	183, 315
Tru9I	TTAA	2 cut(s)	183, 315
TseI	GCWGC	3 cut(s)	332, 335, 386
TspDTI	ATGAA	3 cut(s)	296, 461, 490
TspGWI	ACGGA	1 cut(s)	394
XapI	RAATTY	4 cut(s)	10, 90, 116, 567
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.