Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008332.1

Orthogroup ID

OG0015684

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1905

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008332.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 670 bp

atgtcaggattactctacctttctcctacaaacgtgtttgtgagaatcgcaaagcgtagatcaactgaggaatttgagagtattccttatattagcaaactgttgaatgcttacttctgggtttactatggatttattaagcctaatagcgtggtcgtcgccactgtcaatgttttcggtgctgctgtcgagattgttttccttaccatatttctactttttgcacctccaagaatgaaggttaggactgcgatactagttatagttctggatatggcatttcccggagcaacaattttacttactcactttctgctagacggagataaaaggatcgatgttgctggactctggtgtgtaatcttcagcatgattgcatatgcttcccctctttcagctatgaaaactgtggtggcgttaaagagtgtggagtacatgcctttccttctctctttcatcttttttcttaatggaggagtttggacagtgtatgccattcttgcgaaagacttgtttgttggaattccaaatggaagtggatttttacttggaactgctcagctgattctctatttcatatactggaaaccgaagtcatcaaggcaagcatctgacggtttagaggatcaacagatcataagcgaagcacttatttctaatccttcacagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005355 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008515 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015154 GO:0015157 GO:0015749 GO:0015755 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034285 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1902334 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

223

Amino Acids

24.85

Weight (kDa)

8.92

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08940 FvH4_7g08940 FvH4_7g08940
prunus_persica	Prupe.2G118600_v2.0.a1 Prupe.2G118600_v2.0.a1
pyrus_communis	pycom07g07660
rosa_chinensis	RchiOBHm_Chr1g0344401
rosa_laevigata	RLG00000028900
rosa_multiflora	Rmu_sc0008332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309760
rosa_rugosa	Rorug01G0173700 Rorug01G0173800
rosa_samantha	Rh1AG190000 Rh1BG156900 Rh1CG175500
rosa_wichuraiana	Rw1G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	341, 633
AcsI	RAATTY	2 cut(s)	71, 522
AcuI	CTGAAG	1 cut(s)	349
AfaI	GTAC	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	106
AhlI	ACTAGT	1 cut(s)	256
AluBI	AGCT	2 cut(s)	398, 562
AluI	AGCT	2 cut(s)	398, 562
AlwI	GGATC	2 cut(s)	341, 633
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	71, 522
AsuC2I	CCSGG	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	285
BcuI	ACTAGT	1 cut(s)	256
BfaI	CTAG	2 cut(s)	257, 317
BisI	GCNGC	1 cut(s)	183
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	617
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuMI	CCSGG	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	587
BseCI	ATCGAT	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	57, 572
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	169
BshVI	ATCGAT	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	112
Bsp143I	GATC	4 cut(s)	59, 333, 625, 633
Bsp1720I	GCTNAGC	1 cut(s)	558
BspCNI	CTCAG	2 cut(s)	58, 571
BspDI	ATCGAT	1 cut(s)	336
BspPI	GGATC	2 cut(s)	341, 633
BsrI	ACTGG	1 cut(s)	587
BssMI	GATC	4 cut(s)	59, 333, 625, 633
Bst4CI	ACNGT	5 cut(s)	102, 166, 409, 487, 617
BstC8I	GCNNGC	1 cut(s)	606
BstDEI	CTNAG	2 cut(s)	66, 558
BstKTI	GATC	4 cut(s)	62, 336, 628, 636
BstMBI	GATC	4 cut(s)	59, 333, 625, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	336
BsuTUI	ATCGAT	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	162, 492
Cac8I	GCNNGC	1 cut(s)	606
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	2 cut(s)	370, 436
CviJI	RGCY	3 cut(s)	142, 398, 562
CviKI_1	RGCY	3 cut(s)	142, 398, 562
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	2 cut(s)	66, 558
DpnI	GATC	4 cut(s)	61, 335, 627, 635
DpnII	GATC	4 cut(s)	59, 333, 625, 633
Eco57I	CTGAAG	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	522
FaeI	CATG	2 cut(s)	373, 439
FatI	CATG	2 cut(s)	369, 435
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	257, 317
GluI	GCNGC	1 cut(s)	183
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	2 cut(s)	373, 439
HinfI	GANTC	3 cut(s)	45, 348, 565
HpaII	CCGG	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	3 cut(s)	6, 190, 269
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	232, 455
HpyCH4III	ACNGT	5 cut(s)	102, 166, 409, 487, 617
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	224, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	2 cut(s)	66, 558
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	373, 439
Kzo9I	GATC	4 cut(s)	59, 333, 625, 633
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	7 cut(s)	103, 254, 298, 330, 337, 568, 653
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	617
MaeI	CTAG	2 cut(s)	257, 317
MaeII	ACGT	1 cut(s)	33
MalI	GATC	4 cut(s)	61, 335, 627, 635
MboI	GATC	4 cut(s)	59, 333, 625, 633
MboII	GAAGA	1 cut(s)	355
MluCI	AATT	3 cut(s)	71, 294, 522
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	5 cut(s)	61, 237, 399, 467, 616
MseI	TTAA	3 cut(s)	138, 419, 468
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	4 cut(s)	59, 333, 625, 633
NlaIII	CATG	2 cut(s)	373, 439
NspI	RCATGY	1 cut(s)	439
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	45, 565
PfoI	TCCNGGA	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	3 cut(s)	138, 419, 468
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	4 cut(s)	59, 333, 625, 633
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	6 cut(s)	21, 36, 229, 243, 400, 564
SfaNI	GCATC	1 cut(s)	617
SpeI	ACTAGT	1 cut(s)	256
Sse9I	AATT	3 cut(s)	71, 294, 522
SspMI	CTAG	2 cut(s)	257, 317
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	5 cut(s)	102, 166, 409, 487, 617
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	189, 336
TasI	AATT	3 cut(s)	71, 294, 522
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	2 cut(s)	45, 565
Tru1I	TTAA	3 cut(s)	138, 419, 468
Tru9I	TTAA	3 cut(s)	138, 419, 468
TscAI	CASTG	2 cut(s)	169, 492
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	4 cut(s)	251, 416, 445, 565
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	169, 492
XapI	RAATTY	2 cut(s)	71, 522
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	2 cut(s)	257, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.