Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009714

Physical Location & Seq

Genomic Coordinates Reverse (-)

9337925 .. 9341414

Gene Structure 3490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09750.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCGCAACCCGCCTCCGAACCCGCCCGCCTGCCCGCCACGAAGCGCCGCCGCGACCTCGATTTCTCCCCAGAATCCGCCCCAACGCGCCGGTGCAAGTCCCAATGCCATGACGTCATCTTCCGAGTCGTGGTCCCGTCCAGACAGATCGGCAAGGTCATCGGCAAAGAAGGCTGCCGCATACAGAAGATTCGTGAAGCCTCCAGGGCCTCCATCAAAATCGCCGACGCCGTCGCTAGAAATGAGGAGCGTGTGATTATAATAAGCTCGAAGGGTAGTGATGACGAAACAACTGATGCTGAAAATGCCCTGCAGCAAATAGCTGGCTTGATTCTAAAGGATGGTGAGAATGGTAGTGAGGCGGCAAAAGTGGGTGCAGGACATGTGGCTGCGAATGCGATAAGACTTTTGATTGCCGGCTCCCAAGCAGGTTCTTTAATTGGGATGTCTGGTCAGAATATTGAGAAATTGAGGAACTCTTCTGGGGCCACAATCACAGTCCTTGCTCCGAGTCAGTTGCCTCTGTGTGCATCTGCTCATGAATCTGATAGAGTGGTACAGATATCAGGTGATGTCCCTGCTGTTCAGAAAGGTTTGGAGGAGATCGGTTGTCATATAAGAGAAAACCCGCCTAAGCAAGTGATTTCTCTCAGCCCCGCCTATAACTATACAGCAATTTGGCCACCTCAAGTTCAACCCTACATAGACCCAACTTCAGCTGAATATATTACTGTCGAGATGATGATATCTGAAACAATGGTTGGTGGGCTGATCGGCAGATGCGGCTCCAACATTTCAAGGATTAGAAATGAGACTGGCGCAATGATCAAGGTTTATGGTGGGAAAGGTGAAGAAAAGCATAGGCAAATTCAGTTTTGTGGTAATTCCCAGCAGGTGGTATTGGCAAAGCAGCGGGTTGATGAATATATTTACTCTCAGCTGATACAACAAGCTGGTGCTCAACAGACAGCGAAATCTTCATGCATTGATGCTTCCCAACTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

336

Amino Acids

36.04

Weight (kDa)

8.57

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	41 - 105	1.4e-11	KH domain
KH_1	PF00013	134 - 202	4.9e-12	KH domain
KH_1	PF00013	244 - 307	1.2e-12	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750
malus_domestica	MD00G1041200.v1.1
prunus_persica	Prupe.2G125700_v2.0.a1
pyrus_communis	pycom02g18240
rosa_chinensis	RchiOBHm_Chr1g0346751
rosa_laevigata	RLG00000028782
rosa_multiflora	Rmu_sc0003232.1_g000006
rosa_roxburghii	Rroxscaffold_4G00308410
rosa_rugosa	Rorug01G0182500 Rorug01G0182600
rosa_samantha	Rh1AG201100 Rh1BG167300 Rh1CG185800 Rh1DG198100 Rh4BG074300 Rh5DG368600
rosa_wichuraiana	Rw1G016850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AarI	CACCTGC	1 cut(s)	883
AatII	GACGTC	1 cut(s)	117
Acc36I	ACCTGC	2 cut(s)	419, 883
AccB7I	CCANNNNNTGG	1 cut(s)	895
AccII	CGCG	2 cut(s)	54, 88
AcoI	YGGCCR	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	867
AcuI	CTGAAG	1 cut(s)	699
AcyI	GRCGYC	2 cut(s)	114, 228
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	2 cut(s)	130, 895
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	695, 798
AjnI	CCWGG	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AluBI	AGCT	5 cut(s)	267, 323, 719, 940, 953
AluI	AGCT	5 cut(s)	267, 323, 719, 940, 953
Alw21I	GWGCWC	1 cut(s)	961
Alw26I	GTCTC	1 cut(s)	806
AoxI	GGCC	3 cut(s)	207, 486, 680
ApeKI	GCWGC	4 cut(s)	174, 313, 389, 910
ApoI	RAATTY	1 cut(s)	867
AspLEI	GCGC	4 cut(s)	7, 48, 90, 821
AspS9I	GGNCC	3 cut(s)	133, 207, 486
AsuHPI	GGTGA	3 cut(s)	356, 581, 860
AvaII	GGWCC	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	682
Bbv12I	GWGCWC	1 cut(s)	961
BbvI	GCAGC	4 cut(s)	161, 325, 376, 922
BccI	CCATC	2 cut(s)	221, 335
BceAI	ACGGC	1 cut(s)	215
BcgI	CGANNNNNNTGC	4 cut(s)	142, 176, 499, 533
BciT130I	CCWGG	1 cut(s)	205
BclI	TGATCA	1 cut(s)	825
BcoDI	GTCTC	1 cut(s)	806
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	49
BfuAI	ACCTGC	2 cut(s)	419, 883
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	9 cut(s)	49, 52, 175, 178, 314, 363, 390, 784, 911
BlsI	GCNGC	9 cut(s)	50, 53, 176, 179, 315, 364, 391, 785, 912
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	3 cut(s)	133, 207, 486
BmiI	GGNNCC	4 cut(s)	135, 421, 487, 787
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	4 cut(s)	286, 539, 770, 979
BpmI	CTGGAG	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	672
BsaHI	GRCGYC	2 cut(s)	114, 228
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 895
Bse118I	RCCGGY	2 cut(s)	90, 416
Bse1I	ACTGG	1 cut(s)	820
Bse3DI	GCAATG	1 cut(s)	828
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	346, 450
BseLI	CCNNNNNNNGG	2 cut(s)	130, 895
BseMI	GCAATG	1 cut(s)	828
BseMII	CTCAG	2 cut(s)	664, 950
BseNI	ACTGG	1 cut(s)	820
BseRI	GAGGAG	2 cut(s)	260, 614
BseXI	GCAGC	4 cut(s)	161, 325, 376, 922
BseYI	CCCAGC	1 cut(s)	888
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	2 cut(s)	54, 88
BshFI	GGCC	3 cut(s)	209, 488, 682
BsiHKAI	GWGCWC	1 cut(s)	961
BsiSI	CCGG	2 cut(s)	91, 417
BslFI	GGGAC	3 cut(s)	85, 119, 560
BslI	CCNNNNNNNGG	2 cut(s)	130, 895
BsmAI	GTCTC	1 cut(s)	806
BsmFI	GGGAC	3 cut(s)	85, 119, 560
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	209, 488, 682
Bsp1286I	GDGCHC	1 cut(s)	961
Bsp143I	GATC	4 cut(s)	147, 603, 771, 825
BspANI	GGCC	3 cut(s)	209, 488, 682
BspCNI	CTCAG	2 cut(s)	663, 949
BspFNI	CGCG	2 cut(s)	54, 88
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	4 cut(s)	135, 421, 487, 787
BspMAI	CTGCAG	1 cut(s)	315
BspMI	ACCTGC	2 cut(s)	419, 883
BsrDI	GCAATG	1 cut(s)	828
BsrFI	RCCGGY	2 cut(s)	90, 416
BsrI	ACTGG	1 cut(s)	820
BssAI	RCCGGY	2 cut(s)	90, 416
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	4 cut(s)	147, 603, 771, 825
BssNI	GRCGYC	2 cut(s)	114, 228
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	499, 733
Bst6I	CTCTTC	1 cut(s)	484
BstACI	GRCGYC	2 cut(s)	114, 228
BstC8I	GCNNGC	5 cut(s)	28, 32, 36, 325, 418
BstDEI	CTNAG	3 cut(s)	633, 650, 936
BstF5I	GGATG	2 cut(s)	346, 450
BstFNI	CGCG	2 cut(s)	54, 88
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	4 cut(s)	7, 48, 90, 821
BstKTI	GATC	4 cut(s)	150, 606, 774, 828
BstMAI	GTCTC	1 cut(s)	806
BstMBI	GATC	4 cut(s)	147, 603, 771, 825
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 171, 206, 305, 395, 783
BstNI	CCWGG	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	2 cut(s)	54, 88
BstV1I	GCAGC	4 cut(s)	161, 325, 376, 922
BsuRI	GGCC	3 cut(s)	209, 488, 682
BtsCI	GGATG	2 cut(s)	346, 450
BveI	ACCTGC	2 cut(s)	419, 883
Cac8I	GCNNGC	5 cut(s)	28, 32, 36, 325, 418
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	4 cut(s)	7, 48, 90, 821
Cfr10I	RCCGGY	2 cut(s)	90, 416
Cfr13I	GGNCC	3 cut(s)	133, 207, 486
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	4 cut(s)	110, 383, 539, 981
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	3 cut(s)	633, 650, 936
DpnI	GATC	4 cut(s)	149, 605, 773, 827
DpnII	GATC	4 cut(s)	147, 603, 771, 825
EaeI	YGGCCR	1 cut(s)	680
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
EciI	GGCGGA	1 cut(s)	67
Eco32I	GATATC	2 cut(s)	564, 747
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	699
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	203
EcoRV	GATATC	2 cut(s)	564, 747
EcoT22I	ATGCAT	1 cut(s)	986
FaeI	CATG	4 cut(s)	113, 386, 542, 984
FaqI	GGGAC	3 cut(s)	85, 119, 560
FatI	CATG	4 cut(s)	109, 382, 538, 980
FauI	CCCGC	7 cut(s)	19, 31, 35, 43, 636, 664, 906
FbaI	TGATCA	1 cut(s)	825
Fnu4HI	GCNGC	9 cut(s)	49, 52, 175, 178, 314, 363, 390, 784, 911
FokI	GGATG	2 cut(s)	353, 457
Fsp4HI	GCNGC	9 cut(s)	49, 52, 175, 178, 314, 363, 390, 784, 911
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	4 cut(s)	6, 47, 89, 820
GluI	GCNGC	9 cut(s)	49, 52, 175, 178, 314, 363, 390, 784, 911
GsaI	CCCAGC	1 cut(s)	892
GsuI	CTGGAG	1 cut(s)	187
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	209, 488, 682
HapII	CCGG	2 cut(s)	91, 417
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	4 cut(s)	7, 48, 90, 821
Hin1I	GRCGYC	2 cut(s)	114, 228
Hin1II	CATG	4 cut(s)	113, 386, 542, 984
Hin6I	GCGC	4 cut(s)	5, 46, 88, 819
HinP1I	GCGC	4 cut(s)	5, 46, 88, 819
HinfI	GANTC	6 cut(s)	74, 126, 190, 331, 511, 542
HpaII	CCGG	2 cut(s)	91, 417
HphI	GGTGA	3 cut(s)	356, 581, 860
Hpy188I	TCNGA	7 cut(s)	19, 125, 456, 510, 547, 588, 751
Hpy188III	TCNNGA	4 cut(s)	141, 194, 539, 736
Hpy99I	CGWCG	2 cut(s)	230, 236
HpyAV	CCTTC	2 cut(s)	164, 265
HpyCH4III	ACNGT	2 cut(s)	499, 733
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	96, 313, 377, 530, 984
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 171, 206, 305, 395, 783
HpyF3I	CTNAG	3 cut(s)	633, 650, 936
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	2 cut(s)	114, 228
Hsp92II	CATG	4 cut(s)	113, 386, 542, 984
HspAI	GCGC	4 cut(s)	5, 46, 88, 819
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	825
Kzo9I	GATC	4 cut(s)	147, 603, 771, 825
LmnI	GCTCC	4 cut(s)	247, 425, 511, 791
Lsp1109I	GCAGC	4 cut(s)	161, 325, 376, 922
LweI	GCATC	4 cut(s)	286, 539, 770, 979
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	114
MalI	GATC	4 cut(s)	149, 605, 773, 827
MboI	GATC	4 cut(s)	147, 603, 771, 825
MboII	GAAGA	5 cut(s)	112, 199, 471, 863, 969
MhlI	GDGCHC	1 cut(s)	961
MlsI	TGGCCA	1 cut(s)	682
MluCI	AATT	5 cut(s)	438, 467, 675, 867, 883
MluNI	TGGCCA	1 cut(s)	682
MlyI	GAGTC	2 cut(s)	135, 520
MmeI	TCCRAC	1 cut(s)	813
Mox20I	TGGCCA	1 cut(s)	682
Mph1103I	ATGCAT	1 cut(s)	986
MroNI	GCCGGC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	682
MseI	TTAA	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	682
MspA1I	CMGCKG	3 cut(s)	719, 913, 940
MspI	CCGG	2 cut(s)	91, 417
MspR9I	CCNGG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	2 cut(s)	54, 88
MwoI	GCNNNNNNNGC	6 cut(s)	11, 171, 206, 305, 395, 783
NaeI	GCCGGC	1 cut(s)	418
NdeII	GATC	4 cut(s)	147, 603, 771, 825
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	4 cut(s)	113, 386, 542, 984
NlaIV	GGNNCC	4 cut(s)	135, 421, 487, 787
NsiI	ATGCAT	1 cut(s)	986
NspI	RCATGY	1 cut(s)	386
PagI	TCATGA	1 cut(s)	538
PaqCI	CACCTGC	1 cut(s)	883
PciI	ACATGT	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	1 cut(s)	400
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	4 cut(s)	74, 190, 331, 542
PflFI	GACNNNGTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	895
PkrI	GCNGC	9 cut(s)	50, 53, 176, 179, 315, 364, 391, 785, 912
PleI	GAGTC	2 cut(s)	134, 519
PpsI	GAGTC	2 cut(s)	134, 519
PscI	ACATGT	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	888
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	4 cut(s)	135, 421, 487, 787
PspPI	GGNCC	3 cut(s)	133, 207, 486
PstI	CTGCAG	1 cut(s)	315
PsyI	GACNNNGTC	1 cut(s)	230
PvuII	CAGCTG	2 cut(s)	719, 940
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	9 cut(s)	49, 52, 175, 178, 314, 363, 390, 784, 911
Sau3AI	GATC	4 cut(s)	147, 603, 771, 825
Sau96I	GGNCC	3 cut(s)	133, 207, 486
SchI	GAGTC	2 cut(s)	135, 520
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	961
SfaNI	GCATC	4 cut(s)	286, 539, 770, 979
SfcI	CTRYAG	1 cut(s)	311
SgrAI	CRCCGGYG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	687
SmoI	CTYRAG	1 cut(s)	687
Sse9I	AATT	5 cut(s)	438, 467, 675, 867, 883
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	499, 733
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	60, 269, 735
TasI	AATT	5 cut(s)	438, 467, 675, 867, 883
TauI	GCSGC	5 cut(s)	51, 54, 180, 365, 786
TfiI	GAWTC	4 cut(s)	74, 190, 331, 542
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TseI	GCWGC	4 cut(s)	174, 313, 389, 910
TspDTI	ATGAA	3 cut(s)	555, 936, 969
Tth111I	GACNNNGTC	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	867
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	1 cut(s)	237
ZraI	GACGTC	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.