Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009714

Physical Location & Seq

Genomic Coordinates Reverse (-)

55291882 .. 55292496

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG368600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGTCTGAAACTTCGCGTCTTATCGCACACTTCGCATCTCATCGCTCTGACCACGATCACCGAGCCATTTGAGATTGACTTCGAAGCCGGTCCATGCGAACAAATCCAGTGCCGAATCTACCCTGCAAGTGATGGTATTTCTTCAACGAACAAGATTAAGTATGCCGAATCGGCCTCAAAGTGCAGGGCCAAAGCCCAAGACGTCATTTTCAAAGTCGTGGTTCTGTCGAGACAGATCGGTAAGGTCATCAGTGAAGAAGGCTACCGAGTCCAGAAGATTCATGAAGACTCCAAGGCCACCATCAAAATCACAAATGCCATAGCTCATGTGATTATAATAAGCTCAAAGGATAGTGATGAAAATACTACTCATGTTGAGAATCTGCTGCAGCAAATAGCAGGCTCAATTCTTAAGGTGATGAGCTATCTCAGCTTTGATTTCTCAGTTGTTTTTCTCCGATTCAAAGTTTGGAGTCATAATGGTAGAATCAGTTGCTTGAATCCGATTGCCGCATTGTGTATCGAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

177

Amino Acids

19.7

Weight (kDa)

8.26

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750
malus_domestica	MD00G1041200.v1.1
prunus_persica	Prupe.2G125700_v2.0.a1
pyrus_communis	pycom02g18240
rosa_chinensis	RchiOBHm_Chr1g0346751
rosa_laevigata	RLG00000028782
rosa_multiflora	Rmu_sc0003232.1_g000006
rosa_roxburghii	Rroxscaffold_4G00308410
rosa_rugosa	Rorug01G0182500 Rorug01G0182600
rosa_samantha	Rh1AG201100 Rh1BG167300 Rh1CG185800 Rh1DG198100 Rh4BG074300 Rh5DG368600
rosa_wichuraiana	Rw1G016850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AatII	GACGTC	1 cut(s)	207
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	204
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	147, 214, 466, 502
AluBI	AGCT	5 cut(s)	326, 345, 426, 435, 531
AluI	AGCT	5 cut(s)	326, 345, 426, 435, 531
Alw26I	GTCTC	1 cut(s)	226
AoxI	GGCC	3 cut(s)	174, 189, 297
ApeKI	GCWGC	2 cut(s)	388, 391
AspS9I	GGNCC	2 cut(s)	92, 189
AsuHPI	GGTGA	2 cut(s)	52, 430
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	375, 403
BccI	CCATC	2 cut(s)	128, 311
BcoDI	GTCTC	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	389
BfrI	CTTAAG	1 cut(s)	413
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	3 cut(s)	389, 392, 513
BlsI	GCNGC	3 cut(s)	390, 393, 514
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	92, 189
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	445, 459
BseNI	ACTGG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	375, 403
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	176, 191, 299
BsiSI	CCGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	176, 191, 299
Bsp119I	TTCGAA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	57, 237
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	3 cut(s)	176, 191, 299
BspCNI	CTCAG	2 cut(s)	444, 458
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	393
BspT104I	TTCGAA	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	413
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	57, 237
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	431, 445
BstFNI	CGCG	1 cut(s)	18
BstKTI	GATC	2 cut(s)	60, 240
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	2 cut(s)	57, 237
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 173, 432
BstSFI	CTRYAG	1 cut(s)	389
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	375, 403
BstV2I	GAAGAC	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	176, 191, 299
BtgZI	GCGATG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	116, 259
Cac8I	GCNNGC	1 cut(s)	403
CciI	TCATGA	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	92, 189
CseI	GACGC	1 cut(s)	7
CviAII	CATG	4 cut(s)	96, 284, 329, 374
DdeI	CTNAG	2 cut(s)	431, 445
DpnI	GATC	2 cut(s)	59, 239
DpnII	GATC	2 cut(s)	57, 237
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	4 cut(s)	99, 287, 332, 377
FaiI	YATR	8 cut(s)	97, 165, 285, 323, 330, 338, 375, 480
FatI	CATG	4 cut(s)	95, 283, 328, 373
Fnu4HI	GCNGC	3 cut(s)	389, 392, 513
Fsp4HI	GCNGC	3 cut(s)	389, 392, 513
GluI	GCNGC	3 cut(s)	389, 392, 513
HaeIII	GGCC	3 cut(s)	176, 191, 299
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	99, 287, 332, 377
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	52, 430
Hpy188I	TCNGA	4 cut(s)	9, 51, 461, 507
Hpy188III	TCNNGA	3 cut(s)	231, 274, 284
HpyAV	CCTTC	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	128, 186, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 173, 432
HpyF3I	CTNAG	2 cut(s)	431, 445
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	99, 287, 332, 377
Kzo9I	GATC	2 cut(s)	57, 237
LpnPI	CCDG	6 cut(s)	103, 122, 138, 172, 287, 387
Lsp1109I	GCAGC	2 cut(s)	375, 403
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	204
MalI	GATC	2 cut(s)	59, 239
MboI	GATC	2 cut(s)	57, 237
MboII	GAAGA	4 cut(s)	135, 269, 289, 299
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	4 cut(s)	13, 279, 284, 484
MnlI	CCTC	1 cut(s)	187
MseI	TTAA	2 cut(s)	159, 414
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	34, 173, 432
NdeII	GATC	2 cut(s)	57, 237
NlaIII	CATG	4 cut(s)	99, 287, 332, 377
NspV	TTCGAA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	283
PfeI	GAWTC	7 cut(s)	117, 170, 280, 382, 462, 489, 502
PkrI	GCNGC	3 cut(s)	390, 393, 514
PleI	GAGTC	4 cut(s)	12, 278, 284, 483
PpsI	GAGTC	4 cut(s)	12, 278, 284, 483
PsiI	TTATAA	1 cut(s)	338
PspPI	GGNCC	2 cut(s)	92, 189
PstI	CTGCAG	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	159, 414
SatI	GCNGC	3 cut(s)	389, 392, 513
Sau3AI	GATC	2 cut(s)	57, 237
Sau96I	GGNCC	2 cut(s)	92, 189
SchI	GAGTC	4 cut(s)	13, 279, 284, 484
SetI	ASST	8 cut(s)	207, 249, 328, 347, 420, 428, 437, 533
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	389
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	294
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	84, 230, 525
TasI	AATT	1 cut(s)	408
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	7 cut(s)	117, 170, 280, 382, 462, 489, 502
Tru1I	TTAA	2 cut(s)	159, 414
Tru9I	TTAA	2 cut(s)	159, 414
TscAI	CASTG	2 cut(s)	116, 259
TseI	GCWGC	2 cut(s)	388, 391
TspDTI	ATGAA	3 cut(s)	272, 300, 375
TspRI	CASTG	2 cut(s)	116, 259
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	92
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.