Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009714

Physical Location & Seq

Genomic Coordinates Reverse (-)

37475152 .. 37479187

Gene Structure 4036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCGGAACCCGGCCAAACGCCCATATACCCCCAACAAATCCAAATGCCACCCACCTTCATACCCATACCCGCCTCCCAACCCGCGCACCCGCCCTCCATGAAGCGCCGCCGCGACGACGATTTTCCGCCGGCGCAAATCGGGCCTGAACCCCTGGACCCAGCCCCAAAGCGCCGGGCCAAGGCCCAAGACGTCATCTTCAGAGTCGTGGTCCCGTCCAGACAGATCGGCAAGGTCATCGGCAAAGAAGGCTGCCGAATCCAGAAGATTCGTGAAGACTCCAAGGCCACCATCAAAATCGCCGACGCCATAGCTAGGCACGAGGAGCGTGTGATTATAATAAGCTCAAAGGATGGTGATGAAGATACTACTGATGCCGAGAATGCGCTGCAGCAAATAGCTGGCTTAATTCTTAAGGATGATGAGAATAGCGCTGAGGCGGCAAAAGTTGGTGCAGGACATGTGGCTGCGAATACGATAAGACTTTTGATTGCTGGTTCCCAAGCAGGTTCCTTAATTGGGATGTCTGGTCAGAATATTGAGAAACTGAGGAACTCCTCTGGGGCCACAATTACAATCCTTGCTCCAAGCCAGTTGCCTTTGTGTGCTTCTGCGCATGAATCTGATCGAGTGGTACAGATATCAGGTGATGTCCCTGCTGTTCAGAAAGGTCTGGAGGAGATTGGCTGTCAACTAAGAGAAAACCCACCTCGGCAAGTGATTTCTATCAGTCCCGCCTATAACTATACAGCAATTAGGCCACCTCAAGTTCAACCATACATGGACCCAACTTCAGCTGAATATATAACTTTCGAGATGTTGATATCGGAAACAATGGTTGGTGGGTTGATTGGTAGATGCGGCTCCAACATTTCAAGGATTAGAAATGAGTCTGGCGCAATGATCAAGGTTTATGGTGGGAAAGGTGAACAAAAGCACAGGCAAATTCAGTTTTGTGGTAATGCTCAGCAGGTGGCATTGGCAAAGCAGCGGGTTGATGAGTACATTTACTCTCAGTTGATACAACAAGCTGGTGCTCAACAGACGGCACTTCAAATTTATTTCGTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

357

Amino Acids

38.79

Weight (kDa)

7.63

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	67 - 119	1.7e-11	KH domain
KH_1	PF00013	159 - 228	1.7e-12	KH domain
KH_1	PF00013	270 - 333	2.7e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750
malus_domestica	MD00G1041200.v1.1
prunus_persica	Prupe.2G125700_v2.0.a1
pyrus_communis	pycom02g18240
rosa_chinensis	RchiOBHm_Chr1g0346751
rosa_laevigata	RLG00000028782
rosa_multiflora	Rmu_sc0003232.1_g000006
rosa_roxburghii	Rroxscaffold_4G00308410
rosa_rugosa	Rorug01G0182500 Rorug01G0182600
rosa_samantha	Rh1AG201100 Rh1BG167300 Rh1CG185800 Rh1DG198100 Rh4BG074300 Rh5DG368600
rosa_wichuraiana	Rw1G016850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AarI	CACCTGC	1 cut(s)	961
AatII	GACGTC	1 cut(s)	195
Acc16I	TGCGCA	1 cut(s)	615
Acc36I	ACCTGC	2 cut(s)	497, 961
AccII	CGCG	2 cut(s)	86, 114
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	945, 1056
AcuI	CTGAAG	2 cut(s)	184, 777
AcyI	GRCGYC	2 cut(s)	192, 306
AfaI	GTAC	2 cut(s)	636, 1004
AfeI	AGCGCT	1 cut(s)	433
AfiI	CCNNNNNNNGG	3 cut(s)	181, 315, 519
AflII	CTTAAG	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	3 cut(s)	773, 876, 1055
AjnI	CCWGG	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	822, 854
AluBI	AGCT	5 cut(s)	314, 345, 401, 797, 1031
AluI	AGCT	5 cut(s)	314, 345, 401, 797, 1031
Alw21I	GWGCWC	1 cut(s)	1039
Aor51HI	AGCGCT	1 cut(s)	433
AoxI	GGCC	7 cut(s)	13, 143, 177, 183, 285, 564, 758
ApeKI	GCWGC	5 cut(s)	252, 388, 391, 467, 988
ApoI	RAATTY	2 cut(s)	945, 1056
AspLEI	GCGC	8 cut(s)	88, 108, 136, 174, 388, 434, 616, 899
AspS9I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
AsuC2I	CCSGG	2 cut(s)	12, 176
AsuHPI	GGTGA	3 cut(s)	368, 659, 938
AvaII	GGWCC	3 cut(s)	157, 211, 784
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	1039
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	5 cut(s)	239, 375, 403, 454, 1000
BccI	CCATC	2 cut(s)	299, 347
BceAI	ACGGC	1 cut(s)	1062
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	155
BclI	TGATCA	1 cut(s)	903
BcnI	CCSGG	2 cut(s)	12, 176
BfaI	CTAG	2 cut(s)	315, 1072
BfmI	CTRYAG	1 cut(s)	389
BfoI	RGCGCY	3 cut(s)	109, 175, 435
BfrI	CTTAAG	1 cut(s)	413
BfuAI	ACCTGC	2 cut(s)	497, 961
BisI	GCNGC	9 cut(s)	109, 112, 253, 389, 392, 441, 468, 862, 989
BlpI	GCTNAGC	1 cut(s)	966
BlsI	GCNGC	9 cut(s)	110, 113, 254, 390, 393, 442, 469, 863, 990
Bme1390I	CCNGG	3 cut(s)	12, 155, 176
Bme18I	GGWCC	3 cut(s)	157, 211, 784
BmgT120I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
BmiI	GGNNCC	8 cut(s)	9, 159, 213, 499, 511, 565, 786, 865
BmrFI	CCNGG	3 cut(s)	12, 155, 176
BmsI	GCATC	2 cut(s)	364, 848
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	435
Bpu1102I	GCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	1 cut(s)	750
BpuMI	CCSGG	2 cut(s)	12, 176
BsaBI	GATNNNNATC	1 cut(s)	725
BsaHI	GRCGYC	2 cut(s)	192, 306
BsaJI	CCNNGG	4 cut(s)	153, 180, 282, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 315, 519
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	592
Bse3DI	GCAATG	1 cut(s)	906
Bse8I	GATNNNNATC	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	4 cut(s)	153, 180, 282, 710
BseGI	GGATG	3 cut(s)	358, 424, 528
BseJI	GATNNNNATC	1 cut(s)	725
BseLI	CCNNNNNNNGG	3 cut(s)	181, 315, 519
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	4 cut(s)	426, 539, 980, 1028
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	3 cut(s)	338, 547, 692
BseXI	GCAGC	5 cut(s)	239, 375, 403, 454, 1000
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	2 cut(s)	86, 114
BshFI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
BsiHKAI	GWGCWC	1 cut(s)	1039
BsiSI	CCGG	3 cut(s)	12, 131, 175
BslFI	GGGAC	3 cut(s)	197, 638, 717
BslI	CCNNNNNNNGG	3 cut(s)	181, 315, 519
BsmFI	GGGAC	3 cut(s)	197, 638, 717
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
Bsp1286I	GDGCHC	1 cut(s)	1039
Bsp143I	GATC	3 cut(s)	225, 625, 903
Bsp1720I	GCTNAGC	1 cut(s)	966
BspANI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
BspCNI	CTCAG	4 cut(s)	427, 540, 979, 1027
BspFNI	CGCG	2 cut(s)	86, 114
BspLI	GGNNCC	8 cut(s)	9, 159, 213, 499, 511, 565, 786, 865
BspMAI	CTGCAG	1 cut(s)	393
BspMI	ACCTGC	2 cut(s)	497, 961
BspTI	CTTAAG	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	906
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	4 cut(s)	153, 180, 282, 710
BssMI	GATC	3 cut(s)	225, 625, 903
BssNI	GRCGYC	2 cut(s)	192, 306
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	2 cut(s)	180, 282
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	155
BstACI	GRCGYC	2 cut(s)	192, 306
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	132, 403
BstDEI	CTNAG	5 cut(s)	435, 548, 695, 966, 1014
BstF5I	GGATG	3 cut(s)	358, 424, 528
BstFNI	CGCG	2 cut(s)	86, 114
BstH2I	RGCGCY	3 cut(s)	109, 175, 435
BstHHI	GCGC	8 cut(s)	88, 108, 136, 174, 388, 434, 616, 899
BstKTI	GATC	3 cut(s)	228, 628, 906
BstMBI	GATC	3 cut(s)	225, 625, 903
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 249, 325, 383, 440
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	10, 153, 174
BstSFI	CTRYAG	1 cut(s)	389
BstUI	CGCG	2 cut(s)	86, 114
BstV1I	GCAGC	5 cut(s)	239, 375, 403, 454, 1000
BstV2I	GAAGAC	1 cut(s)	282
BsuRI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
BtsCI	GGATG	3 cut(s)	358, 424, 528
BveI	ACCTGC	2 cut(s)	497, 961
Cac8I	GCNNGC	2 cut(s)	132, 403
CfoI	GCGC	8 cut(s)	88, 108, 136, 174, 388, 434, 616, 899
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	635, 1003
CviAII	CATG	4 cut(s)	100, 461, 617, 781
CviQI	GTAC	2 cut(s)	635, 1003
DdeI	CTNAG	5 cut(s)	435, 548, 695, 966, 1014
DpnI	GATC	3 cut(s)	227, 627, 905
DpnII	GATC	3 cut(s)	225, 625, 903
EaeI	YGGCCR	1 cut(s)	13
EciI	GGCGGA	2 cut(s)	20, 117
Eco130I	CCWWGG	2 cut(s)	180, 282
Eco32I	GATATC	2 cut(s)	642, 825
Eco47I	GGWCC	3 cut(s)	157, 211, 784
Eco47III	AGCGCT	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	184, 777
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	2 cut(s)	642, 825
EcoT14I	CCWWGG	2 cut(s)	180, 282
ErhI	CCWWGG	2 cut(s)	180, 282
FaeI	CATG	4 cut(s)	103, 464, 620, 784
FaqI	GGGAC	3 cut(s)	197, 638, 717
FatI	CATG	4 cut(s)	99, 460, 616, 780
FauI	CCCGC	5 cut(s)	79, 91, 99, 742, 984
FbaI	TGATCA	1 cut(s)	903
Fnu4HI	GCNGC	9 cut(s)	109, 112, 253, 389, 392, 441, 468, 862, 989
FokI	GGATG	3 cut(s)	365, 431, 535
Fsp4HI	GCNGC	9 cut(s)	109, 112, 253, 389, 392, 441, 468, 862, 989
FspBI	CTAG	2 cut(s)	315, 1072
FspI	TGCGCA	1 cut(s)	615
GlaI	GCGC	8 cut(s)	87, 107, 135, 173, 387, 433, 615, 898
GluI	GCNGC	9 cut(s)	109, 112, 253, 389, 392, 441, 468, 862, 989
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	695
HaeII	RGCGCY	3 cut(s)	109, 175, 435
HaeIII	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
HapII	CCGG	3 cut(s)	12, 131, 175
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	8 cut(s)	88, 108, 136, 174, 388, 434, 616, 899
Hin1I	GRCGYC	2 cut(s)	192, 306
Hin1II	CATG	4 cut(s)	103, 464, 620, 784
Hin6I	GCGC	8 cut(s)	86, 106, 134, 172, 386, 432, 614, 897
HinP1I	GCGC	8 cut(s)	86, 106, 134, 172, 386, 432, 614, 897
HincII	GTYRAC	1 cut(s)	692
HindII	GTYRAC	1 cut(s)	692
HinfI	GANTC	6 cut(s)	204, 258, 268, 278, 620, 890
HpaII	CCGG	3 cut(s)	12, 131, 175
HphI	GGTGA	3 cut(s)	368, 659, 938
Hpy166II	GTNNAC	2 cut(s)	692, 929
Hpy188I	TCNGA	5 cut(s)	203, 534, 625, 666, 829
Hpy188III	TCNNGA	5 cut(s)	219, 262, 272, 674, 814
Hpy8I	GTNNAC	2 cut(s)	692, 929
Hpy99I	CGWCG	3 cut(s)	119, 122, 308
HpyAV	CCTTC	2 cut(s)	67, 242
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	391, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 249, 325, 383, 440
HpyF3I	CTNAG	5 cut(s)	435, 548, 695, 966, 1014
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	192, 306
Hsp92II	CATG	4 cut(s)	103, 464, 620, 784
HspAI	GCGC	8 cut(s)	86, 106, 134, 172, 386, 432, 614, 897
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	903
Kzo9I	GATC	3 cut(s)	225, 625, 903
LmnI	GCTCC	3 cut(s)	325, 589, 869
Lsp1109I	GCAGC	5 cut(s)	239, 375, 403, 454, 1000
LweI	GCATC	2 cut(s)	364, 848
MaeI	CTAG	2 cut(s)	315, 1072
MaeII	ACGT	1 cut(s)	192
MalI	GATC	3 cut(s)	227, 627, 905
MboI	GATC	3 cut(s)	225, 625, 903
MboII	GAAGA	4 cut(s)	190, 277, 287, 374
MhlI	GDGCHC	1 cut(s)	1039
MluCI	AATT	6 cut(s)	408, 516, 570, 753, 945, 1056
MlyI	GAGTC	3 cut(s)	213, 272, 899
MmeI	TCCRAC	1 cut(s)	891
MnlI	CCTC	9 cut(s)	85, 106, 316, 430, 543, 568, 670, 720, 774
MreI	CGCCGGCG	1 cut(s)	130
MroNI	GCCGGC	1 cut(s)	130
MseI	TTAA	3 cut(s)	407, 414, 515
MspA1I	CMGCKG	2 cut(s)	797, 991
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	3 cut(s)	12, 131, 175
MspR9I	CCNGG	3 cut(s)	12, 155, 176
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	2 cut(s)	86, 114
MwoI	GCNNNNNNNGC	5 cut(s)	142, 249, 325, 383, 440
NaeI	GCCGGC	1 cut(s)	132
NciI	CCSGG	2 cut(s)	12, 176
NdeII	GATC	3 cut(s)	225, 625, 903
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	4 cut(s)	103, 464, 620, 784
NlaIV	GGNNCC	8 cut(s)	9, 159, 213, 499, 511, 565, 786, 865
NmeAIII	GCCGAG	2 cut(s)	403, 691
NsbI	TGCGCA	1 cut(s)	615
NspI	RCATGY	1 cut(s)	464
PaqCI	CACCTGC	1 cut(s)	961
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	388
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	3 cut(s)	258, 268, 620
PkrI	GCNGC	9 cut(s)	110, 113, 254, 390, 393, 442, 469, 863, 990
PleI	GAGTC	3 cut(s)	212, 272, 898
PpsI	GAGTC	3 cut(s)	212, 272, 898
PscI	ACATGT	1 cut(s)	460
PsiI	TTATAA	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	8 cut(s)	9, 159, 213, 499, 511, 565, 786, 865
PspPI	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
PstI	CTGCAG	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	636, 1004
RsaNI	GTAC	2 cut(s)	635, 1003
SaqAI	TTAA	3 cut(s)	407, 414, 515
SatI	GCNGC	9 cut(s)	109, 112, 253, 389, 392, 441, 468, 862, 989
Sau3AI	GATC	3 cut(s)	225, 625, 903
Sau96I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
SchI	GAGTC	3 cut(s)	213, 272, 899
ScrFI	CCNGG	3 cut(s)	12, 155, 176
SduI	GDGCHC	1 cut(s)	1039
SfaNI	GCATC	2 cut(s)	364, 848
SfcI	CTRYAG	1 cut(s)	389
SgrAI	CRCCGGYG	1 cut(s)	130
SinI	GGWCC	3 cut(s)	157, 211, 784
SmlI	CTYRAG	2 cut(s)	413, 765
SmoI	CTYRAG	2 cut(s)	413, 765
Sse9I	AATT	6 cut(s)	408, 516, 570, 753, 945, 1056
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	315, 1072
StyD4I	CCNGG	3 cut(s)	10, 153, 174
StyI	CCWWGG	2 cut(s)	180, 282
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	628, 813
TasI	AATT	6 cut(s)	408, 516, 570, 753, 945, 1056
TatI	WGTACW	1 cut(s)	1002
TauI	GCSGC	4 cut(s)	111, 114, 443, 864
TfiI	GAWTC	3 cut(s)	258, 268, 620
Tru1I	TTAA	3 cut(s)	407, 414, 515
Tru9I	TTAA	3 cut(s)	407, 414, 515
TseI	GCWGC	5 cut(s)	252, 388, 391, 467, 988
TspDTI	ATGAA	4 cut(s)	49, 116, 375, 633
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	3 cut(s)	157, 211, 784
XapI	RAATTY	2 cut(s)	945, 1056
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	2 cut(s)	315, 1072
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.