Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009714

Physical Location & Seq

Genomic Coordinates Forward (+)

7291402 .. 7297387

Gene Structure 5986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1041200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGCAACCAGGCCAGATGCCCGTACTCCCCGAAGTACCCATACCCGGATCCGAACCCGCCCATCGGACCTCCCTGAAGCGCCTCCGAGAGGACGAGTTTTCAGTGGTGTTATCCGGACAGGAGCCCCAGGAACCCGGCCCGAAGCGCCGGGCCAAGGCCCAGGACGTCCTCTTCAGAATCGTCGTCCCCTCTCGGCAGATCGGAAAAGTAATAGGGAAGGAGGGGTGCCGAATCCAGAAGATTCGCGAAGAGACCAAGGCCAATATCAAAATCGCCGACGCCATTGCTAGACACGAGGAACGTGTGATTATAATAAGCTCAAAGGATAGTGATGATTCAAGTAGTGATGCTGAGAAAGCGCTGCAGCAGATAGCTGGGTTGATTCTGAAGGAAGATGATAGTGGTACTGAGGCAGCAAAAGTTGGTGCAGGACATGTGGCTGCTAATACAATAAGACTTTTGATTGCTGGGTCGCAAGCAGGTTCTTTGATTGGGATGTCTGGCCAGAATATTGAGAAATTGAGAAATTATTCTGGTGCCACAATCACAATCCTTGCTCCAAATCAGTTGCCTTTGTGTGCGTCTGCACATGAATCCGATCGAGTTGTACAGGTATCAGGTGATTTCCCTGCTGTTCTGAAGGCTCTGCAGGAGATTGGTGATCAACTAAGAGAAAACCCACCCCGACAAGTGATTTCTATTAGCCCAGCCTATAACTACACAACAAGACGACCACCTCAAGTTCAACCATACATGGACCCAGCTTCAGCTGAATATATAACTTTCGAGATGGTGATATCGGAAACACTAGTTGGTGGGTTGATTGGTAGAAACGGTTCCAACATTTCAAGGATCAGAAATGAGTCTGGAGCAATGATCAAGGTTTATGGTGGAAAAGGTGAGCAAAAGCATAGGCAAGTTCAGTTTTGTGGTAGTGCTCAACAGGTGGCACTCGCAAAGCAGAGGGTTGATGAGTACATATATTCTCAGCTGGTACAACAACCTGGCGCTCAACAGCCAGTTTTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

345

Amino Acids

37.37

Weight (kDa)

8.65

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	60 - 112	1.8e-12	KH domain
KH_1	PF00013	151 - 221	3.2e-12	KH domain
KH_1	PF00013	262 - 325	1.7e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750
malus_domestica	MD00G1041200.v1.1
prunus_persica	Prupe.2G125700_v2.0.a1
pyrus_communis	pycom02g18240
rosa_chinensis	RchiOBHm_Chr1g0346751
rosa_laevigata	RLG00000028782
rosa_multiflora	Rmu_sc0003232.1_g000006
rosa_roxburghii	Rroxscaffold_4G00308410
rosa_rugosa	Rorug01G0182500 Rorug01G0182600
rosa_samantha	Rh1AG201100 Rh1BG167300 Rh1CG185800 Rh1DG198100 Rh4BG074300 Rh5DG368600
rosa_wichuraiana	Rw1G016850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AatII	GACGTC	1 cut(s)	171
Acc36I	ACCTGC	1 cut(s)	473
AccB1I	GGYRCC	2 cut(s)	228, 539
AccII	CGCG	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	116
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	3 cut(s)	45, 58, 863
AcoI	YGGCCR	1 cut(s)	505
AcuI	CTGAAG	5 cut(s)	98, 160, 410, 662, 753
AcyI	GRCGYC	2 cut(s)	168, 282
AfaI	GTAC	6 cut(s)	27, 39, 409, 612, 980, 999
AfeI	AGCGCT	1 cut(s)	363
AfiI	CCNNNNNNNGG	4 cut(s)	47, 66, 91, 157
AflIII	ACRYGT	2 cut(s)	304, 436
AgsI	TTSAA	3 cut(s)	342, 749, 852
AhlI	ACTAGT	1 cut(s)	811
AjnI	CCWGG	4 cut(s)	10, 129, 162, 1006
AjuI	GAANNNNNNNTTGG	2 cut(s)	798, 830
AluBI	AGCT	5 cut(s)	321, 377, 767, 773, 994
AluI	AGCT	5 cut(s)	321, 377, 767, 773, 994
Alw21I	GWGCWC	1 cut(s)	943
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	3 cut(s)	45, 58, 863
Aor13HI	TCCGGA	1 cut(s)	116
Aor51HI	AGCGCT	1 cut(s)	363
AoxI	GGCC	6 cut(s)	13, 139, 153, 159, 261, 505
ApeKI	GCWGC	4 cut(s)	364, 367, 416, 443
Asp700I	GAANNNNTTC	2 cut(s)	532, 838
AspLEI	GCGC	5 cut(s)	7, 84, 150, 364, 1013
AspS9I	GGNCC	5 cut(s)	69, 140, 153, 160, 760
AsuC2I	CCSGG	3 cut(s)	48, 138, 152
AsuHPI	GGTGA	4 cut(s)	635, 674, 808, 914
AvaII	GGWCC	2 cut(s)	69, 760
BalI	TGGCCA	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	50
BanI	GGYRCC	2 cut(s)	228, 539
BanII	GRGCYC	1 cut(s)	129
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
BauI	CACGAG	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	943
BbvI	GCAGC	4 cut(s)	351, 379, 428, 430
BccI	CCATC	2 cut(s)	72, 787
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	4 cut(s)	12, 131, 164, 1008
BclI	TGATCA	2 cut(s)	664, 879
BcnI	CCSGG	3 cut(s)	48, 138, 152
BcoDI	GTCTC	1 cut(s)	248
BcuI	ACTAGT	1 cut(s)	811
BfaI	CTAG	2 cut(s)	291, 812
BfmI	CTRYAG	2 cut(s)	365, 650
BfoI	RGCGCY	4 cut(s)	85, 151, 365, 1014
BfuAI	ACCTGC	1 cut(s)	473
BisI	GCNGC	4 cut(s)	365, 368, 417, 444
BlsI	GCNGC	4 cut(s)	366, 369, 418, 445
Bme1390I	CCNGG	7 cut(s)	12, 48, 131, 138, 152, 164, 1008
Bme18I	GGWCC	2 cut(s)	69, 760
BmgT120I	GGNCC	5 cut(s)	69, 140, 153, 160, 760
BmiI	GGNNCC	7 cut(s)	52, 126, 135, 230, 541, 762, 841
BmrFI	CCNGG	7 cut(s)	12, 48, 131, 138, 152, 164, 1008
BmsI	GCATC	2 cut(s)	9, 340
BpmI	CTGGAG	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	726
BpuMI	CCSGG	3 cut(s)	48, 138, 152
BsaHI	GRCGYC	2 cut(s)	168, 282
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	129, 156, 162, 258
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 66, 91, 157
Bse1I	ACTGG	1 cut(s)	1022
Bse3DI	GCAATG	2 cut(s)	285, 882
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	4 cut(s)	12, 131, 164, 1008
BseDI	CCNNGG	4 cut(s)	129, 156, 162, 258
BseGI	GGATG	1 cut(s)	504
BseLI	CCNNNNNNNGG	4 cut(s)	47, 66, 91, 157
BseMI	GCAATG	2 cut(s)	285, 882
BseMII	CTCAG	3 cut(s)	345, 402, 1004
BseNI	ACTGG	1 cut(s)	1022
BseXI	GCAGC	4 cut(s)	351, 379, 428, 430
BseYI	CCCAGC	4 cut(s)	377, 470, 709, 763
BsgI	GTGCAG	2 cut(s)	450, 573
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	604
BshFI	GGCC	6 cut(s)	15, 141, 155, 161, 263, 507
BshNI	GGYRCC	2 cut(s)	228, 539
BsiEI	CGRYCG	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	943
BsiSI	CCGG	4 cut(s)	48, 117, 138, 151
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	4 cut(s)	47, 66, 91, 157
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	6 cut(s)	15, 141, 155, 161, 263, 507
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	129, 943
Bsp13I	TCCGGA	1 cut(s)	116
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	6 cut(s)	50, 201, 601, 664, 855, 879
Bsp68I	TCGCGA	1 cut(s)	249
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	6 cut(s)	15, 141, 155, 161, 263, 507
BspCNI	CTCAG	3 cut(s)	346, 403, 1003
BspEI	TCCGGA	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	7 cut(s)	52, 126, 135, 230, 541, 762, 841
BspMAI	CTGCAG	2 cut(s)	369, 654
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	3 cut(s)	45, 58, 863
BspT107I	GGYRCC	2 cut(s)	228, 539
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	2 cut(s)	285, 882
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	1022
BssECI	CCNNGG	4 cut(s)	129, 156, 162, 258
BssMI	GATC	6 cut(s)	50, 201, 601, 664, 855, 879
BssNI	GRCGYC	2 cut(s)	168, 282
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	2 cut(s)	156, 258
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	4 cut(s)	12, 131, 164, 1008
Bst4CI	ACNGT	2 cut(s)	839, 1032
Bst6I	CTCTTC	2 cut(s)	179, 246
BstACI	GRCGYC	2 cut(s)	168, 282
BstAUI	TGTACA	1 cut(s)	610
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	4 cut(s)	354, 411, 671, 990
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	504
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	4 cut(s)	85, 151, 365, 1014
BstHHI	GCGC	5 cut(s)	7, 84, 150, 364, 1013
BstKTI	GATC	6 cut(s)	53, 204, 604, 667, 858, 882
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	6 cut(s)	50, 201, 601, 664, 855, 879
BstMCI	CGRYCG	1 cut(s)	604
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 359
BstNI	CCWGG	4 cut(s)	12, 131, 164, 1008
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	7 cut(s)	10, 46, 129, 136, 150, 162, 1006
BstSFI	CTRYAG	2 cut(s)	365, 650
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	351, 379, 428, 430
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuRI	GGCC	6 cut(s)	15, 141, 155, 161, 263, 507
BtsCI	GGATG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	111
BtuMI	TCGCGA	1 cut(s)	249
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	480
CfoI	GCGC	5 cut(s)	7, 84, 150, 364, 1013
Cfr13I	GGNCC	5 cut(s)	69, 140, 153, 160, 760
CseI	GACGC	2 cut(s)	290, 573
Csp6I	GTAC	6 cut(s)	26, 38, 408, 611, 979, 998
CviAII	CATG	3 cut(s)	437, 593, 757
CviQI	GTAC	6 cut(s)	26, 38, 408, 611, 979, 998
DdeI	CTNAG	4 cut(s)	354, 411, 671, 990
DpnI	GATC	6 cut(s)	52, 203, 603, 666, 857, 881
DpnII	GATC	6 cut(s)	50, 201, 601, 664, 855, 879
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	2 cut(s)	179, 246
EarI	CTCTTC	2 cut(s)	179, 246
Eco130I	CCWWGG	2 cut(s)	156, 258
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	248
Eco32I	GATATC	1 cut(s)	801
Eco47I	GGWCC	2 cut(s)	69, 760
Eco47III	AGCGCT	1 cut(s)	363
Eco57I	CTGAAG	5 cut(s)	98, 160, 410, 662, 753
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoRII	CCWGG	4 cut(s)	10, 129, 162, 1006
EcoRV	GATATC	1 cut(s)	801
EcoT14I	CCWWGG	2 cut(s)	156, 258
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	2 cut(s)	156, 258
FaeI	CATG	3 cut(s)	440, 596, 760
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	3 cut(s)	436, 592, 756
FauI	CCCGC	1 cut(s)	67
FbaI	TGATCA	2 cut(s)	664, 879
Fnu4HI	GCNGC	4 cut(s)	365, 368, 417, 444
FokI	GGATG	1 cut(s)	511
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	365, 368, 417, 444
FspBI	CTAG	2 cut(s)	291, 812
GlaI	GCGC	5 cut(s)	6, 83, 149, 363, 1012
GluI	GCNGC	4 cut(s)	365, 368, 417, 444
GsaI	CCCAGC	4 cut(s)	381, 474, 713, 767
GsuI	CTGGAG	1 cut(s)	891
HaeII	RGCGCY	4 cut(s)	85, 151, 365, 1014
HaeIII	GGCC	6 cut(s)	15, 141, 155, 161, 263, 507
HapII	CCGG	4 cut(s)	48, 117, 138, 151
HgaI	GACGC	2 cut(s)	290, 573
HhaI	GCGC	5 cut(s)	7, 84, 150, 364, 1013
Hin1I	GRCGYC	2 cut(s)	168, 282
Hin1II	CATG	3 cut(s)	440, 596, 760
Hin6I	GCGC	5 cut(s)	5, 82, 148, 362, 1011
HinP1I	GCGC	5 cut(s)	5, 82, 148, 362, 1011
HinfI	GANTC	7 cut(s)	180, 234, 244, 338, 385, 596, 866
HpaII	CCGG	4 cut(s)	48, 117, 138, 151
HphI	GGTGA	4 cut(s)	635, 674, 808, 914
Hpy188III	TCNNGA	5 cut(s)	117, 238, 248, 790, 870
Hpy99I	CGWCG	2 cut(s)	188, 284
HpyAV	CCTTC	3 cut(s)	214, 385, 637
HpyCH4III	ACNGT	2 cut(s)	839, 1032
HpyCH4IV	ACGT	2 cut(s)	168, 304
HpyCH4V	TGCA	4 cut(s)	367, 431, 590, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 359
HpyF3I	CTNAG	4 cut(s)	354, 411, 671, 990
HpySE526I	ACGT	2 cut(s)	168, 304
Hsp92I	GRCGYC	2 cut(s)	168, 282
Hsp92II	CATG	3 cut(s)	440, 596, 760
HspAI	GCGC	5 cut(s)	5, 82, 148, 362, 1011
Kpn2I	TCCGGA	1 cut(s)	116
Ksp22I	TGATCA	2 cut(s)	664, 879
Kzo9I	GATC	6 cut(s)	50, 201, 601, 664, 855, 879
LmnI	GCTCC	3 cut(s)	124, 565, 872
Lsp1109I	GCAGC	4 cut(s)	351, 379, 428, 430
LweI	GCATC	2 cut(s)	9, 340
MaeI	CTAG	2 cut(s)	291, 812
MaeII	ACGT	2 cut(s)	168, 304
MalI	GATC	6 cut(s)	52, 203, 603, 666, 857, 881
MboI	GATC	6 cut(s)	50, 201, 601, 664, 855, 879
MboII	GAAGA	4 cut(s)	166, 253, 263, 407
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	129, 943
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	2 cut(s)	521, 529
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	1 cut(s)	875
MmeI	TCCRAC	1 cut(s)	867
Mox20I	TGGCCA	1 cut(s)	507
MroI	TCCGGA	1 cut(s)	116
MroXI	GAANNNNTTC	2 cut(s)	532, 838
MscI	TGGCCA	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	507
MspA1I	CMGCKG	2 cut(s)	773, 994
MspI	CCGG	4 cut(s)	48, 117, 138, 151
MspR9I	CCNGG	7 cut(s)	12, 48, 131, 138, 152, 164, 1008
MvaI	CCWGG	4 cut(s)	12, 131, 164, 1008
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	147, 359
NciI	CCSGG	3 cut(s)	48, 138, 152
NdeII	GATC	6 cut(s)	50, 201, 601, 664, 855, 879
NlaIII	CATG	3 cut(s)	440, 596, 760
NlaIV	GGNNCC	7 cut(s)	52, 126, 135, 230, 541, 762, 841
NmeAIII	GCCGAG	1 cut(s)	175
NruI	TCGCGA	1 cut(s)	249
NspI	RCATGY	1 cut(s)	440
PciI	ACATGT	1 cut(s)	436
PdmI	GAANNNNTTC	2 cut(s)	532, 838
PfeI	GAWTC	6 cut(s)	180, 234, 244, 338, 385, 596
PkrI	GCNGC	4 cut(s)	366, 369, 418, 445
Ple19I	CGATCG	1 cut(s)	604
PleI	GAGTC	1 cut(s)	874
PpsI	GAGTC	1 cut(s)	874
PscI	ACATGT	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	314
Psp6I	CCWGG	4 cut(s)	10, 129, 162, 1006
PspFI	CCCAGC	4 cut(s)	377, 470, 709, 763
PspGI	CCWGG	4 cut(s)	10, 129, 162, 1006
PspN4I	GGNNCC	7 cut(s)	52, 126, 135, 230, 541, 762, 841
PspPI	GGNCC	5 cut(s)	69, 140, 153, 160, 760
PsrI	GAACNNNNNNTAC	2 cut(s)	823, 855
PstI	CTGCAG	2 cut(s)	369, 654
PsuI	RGATCY	1 cut(s)	50
PvuI	CGATCG	1 cut(s)	604
PvuII	CAGCTG	2 cut(s)	773, 994
RruI	TCGCGA	1 cut(s)	249
RsaI	GTAC	6 cut(s)	27, 39, 409, 612, 980, 999
RsaNI	GTAC	6 cut(s)	26, 38, 408, 611, 979, 998
SatI	GCNGC	4 cut(s)	365, 368, 417, 444
Sau3AI	GATC	6 cut(s)	50, 201, 601, 664, 855, 879
Sau96I	GGNCC	5 cut(s)	69, 140, 153, 160, 760
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	7 cut(s)	12, 48, 131, 138, 152, 164, 1008
SduI	GDGCHC	2 cut(s)	129, 943
SfaNI	GCATC	2 cut(s)	9, 340
SfcI	CTRYAG	2 cut(s)	365, 650
SinI	GGWCC	2 cut(s)	69, 760
SmlI	CTYRAG	1 cut(s)	741
SmoI	CTYRAG	1 cut(s)	741
SpeI	ACTAGT	1 cut(s)	811
Sse9I	AATT	2 cut(s)	521, 529
SsiI	CCGC	1 cut(s)	60
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	2 cut(s)	291, 812
StyD4I	CCNGG	7 cut(s)	10, 46, 129, 136, 150, 162, 1006
StyI	CCWWGG	2 cut(s)	156, 258
TaaI	ACNGT	2 cut(s)	839, 1032
TaiI	ACGT	2 cut(s)	171, 307
TaqI	TCGA	2 cut(s)	604, 789
TasI	AATT	2 cut(s)	521, 529
TatI	WGTACW	2 cut(s)	610, 978
TfiI	GAWTC	6 cut(s)	180, 234, 244, 338, 385, 596
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	4 cut(s)	364, 367, 416, 443
TspDTI	ATGAA	1 cut(s)	609
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	69, 760
XagI	CCTNNNNNAGG	1 cut(s)	89
XceI	RCATGY	1 cut(s)	440
XmnI	GAANNNNTTC	2 cut(s)	532, 838
XspI	CTAG	2 cut(s)	291, 812
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.