Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009714

Physical Location & Seq

Genomic Coordinates Forward (+)

25153620 .. 25154220

Gene Structure 601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0182600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCCTCCTCATCCTCACCACCAACACCACCACCACCATCATGATCAACCACCACCCCCAAAACCCAATCCCAAGCTCCTATCTTCAATCCTCAAAGCCCTCATAATGACCTTCATAACCTCAATCTTCTTCCTCTTCCTCGGCTTAGTCGCTTTCATCCTCTTCCTCATCCTCGCCGCCGACGCTCTCCACCGTCGCCGCACCCAATTCGACCTCCCCTCATCTGGGTTCTCCCCCAGACACTTCAAGACCCTCCCTCAGTTCCGCTTCCGAACCCAAAACCAAACGGCATCGTCATCGTCCGCCCAGTCCGACTGCGTCGTCTGCCTGGACGCGTTTCGGGAAGGCCAATGGTGCCGGAAACTCCCTGCATGTGGTCACCTGTTCCATAGGAGGTGCCTCGACACGTGGCTCGTTAAGGTTTCGGCTTGTCCCATTTGCCGGACACCTGTTCAATTAGGGAACACCGCCTCCGCCGCCGGTGAAGAAGAAGAGGCAAAGCGCTTGTGGAATTTTAATAGGAACACTAGTTCAAGGGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

181

Amino Acids

20.71

Weight (kDa)

9.83

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	103 - 148	3.5e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	105 - 148	4.8e-13	Ring finger domain
zf-RING_11	PF17123	105 - 134	3.8e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	106 - 147	1.8e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750
malus_domestica	MD00G1041200.v1.1
prunus_persica	Prupe.2G125700_v2.0.a1
pyrus_communis	pycom02g18240
rosa_chinensis	RchiOBHm_Chr1g0346751
rosa_laevigata	RLG00000028782
rosa_multiflora	Rmu_sc0003232.1_g000006
rosa_roxburghii	Rroxscaffold_4G00308410
rosa_rugosa	Rorug01G0182500 Rorug01G0182600
rosa_samantha	Rh1AG201100 Rh1BG167300 Rh1CG185800 Rh1DG198100 Rh4BG074300 Rh5DG368600
rosa_wichuraiana	Rw1G016850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccB1I	GGYRCC	2 cut(s)	354, 396
AccII	CGCG	1 cut(s)	335
AciI	CCGC	7 cut(s)	177, 199, 265, 303, 468, 474, 477
AcsI	RAATTY	1 cut(s)	511
AcvI	CACGTG	1 cut(s)	408
AfeI	AGCGCT	1 cut(s)	503
AfiI	CCNNNNNNNGG	4 cut(s)	224, 225, 374, 441
AflIII	ACRYGT	2 cut(s)	333, 405
AgsI	TTSAA	4 cut(s)	87, 247, 455, 534
AhlI	ACTAGT	1 cut(s)	527
AjnI	CCWGG	1 cut(s)	327
AloI	GAACNNNNNNTCC	4 cut(s)	455, 487, 514, 546
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Aor51HI	AGCGCT	1 cut(s)	503
AoxI	GGCC	1 cut(s)	346
ApoI	RAATTY	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	504
AsuHPI	GGTGA	3 cut(s)	8, 371, 494
BanI	GGYRCC	2 cut(s)	354, 396
BbrPI	CACGTG	1 cut(s)	408
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	303
BcgI	CGANNNNNNTGC	4 cut(s)	190, 224, 279, 313
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	505
BisI	GCNGC	3 cut(s)	177, 199, 477
BlsI	GCNGC	3 cut(s)	178, 200, 478
Bme1390I	CCNGG	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	356, 398
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	299
BmuI	ACTGGG	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	4 cut(s)	224, 225, 374, 441
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	3 cut(s)	10, 156, 168
BseLI	CCNNNNNNNGG	4 cut(s)	224, 225, 374, 441
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	2 cut(s)	354, 396
BsiSI	CCGG	3 cut(s)	358, 442, 480
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	4 cut(s)	224, 225, 374, 441
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	7 cut(s)	177, 199, 265, 303, 468, 474, 477
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	356, 398
BspT107I	GGYRCC	2 cut(s)	354, 396
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	3 cut(s)	140, 167, 486
BstBAI	YACGTR	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	145, 258
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	3 cut(s)	10, 156, 168
BstFNI	CGCG	1 cut(s)	335
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 324, 354, 476
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	375
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	327
BstUI	CGCG	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	10, 156, 168
CciI	TCATGA	1 cut(s)	40
CfoI	GCGC	1 cut(s)	504
Cfr10I	RCCGGY	1 cut(s)	479
CseI	GACGC	3 cut(s)	191, 307, 341
CviAII	CATG	2 cut(s)	41, 372
CviJI	RGCY	6 cut(s)	76, 98, 144, 348, 412, 428
CviKI_1	RGCY	6 cut(s)	76, 98, 144, 348, 412, 428
DdeI	CTNAG	2 cut(s)	145, 258
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	3 cut(s)	140, 167, 486
EarI	CTCTTC	3 cut(s)	140, 167, 486
EciI	GGCGGA	2 cut(s)	292, 463
Eco47III	AGCGCT	1 cut(s)	503
Eco72I	CACGTG	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	327
FaeI	CATG	2 cut(s)	44, 375
FaiI	YATR	5 cut(s)	42, 104, 116, 373, 390
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	2 cut(s)	40, 371
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	177, 199, 477
FokI	GGATG	2 cut(s)	143, 155
Fsp4HI	GCNGC	3 cut(s)	177, 199, 477
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	3 cut(s)	177, 199, 477
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	3 cut(s)	358, 442, 480
HgaI	GACGC	3 cut(s)	191, 307, 341
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	2 cut(s)	44, 375
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HpaII	CCGG	3 cut(s)	358, 442, 480
HphI	GGTGA	3 cut(s)	8, 371, 494
Hpy188I	TCNGA	2 cut(s)	272, 313
Hpy188III	TCNNGA	3 cut(s)	41, 247, 341
Hpy99I	CGWCG	3 cut(s)	185, 198, 323
HpyAV	CCTTC	2 cut(s)	121, 338
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 324, 354, 476
HpyF3I	CTNAG	2 cut(s)	145, 258
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	44, 375
HspAI	GCGC	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	81
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	8 cut(s)	75, 118, 121, 127, 154, 497, 500, 503
MluCI	AATT	3 cut(s)	206, 455, 511
MluI	ACGCGT	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	336
MseI	TTAA	2 cut(s)	417, 516
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	3 cut(s)	358, 442, 480
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	4 cut(s)	182, 324, 354, 476
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	44, 375
NlaIV	GGNNCC	2 cut(s)	356, 398
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	375
PagI	TCATGA	1 cut(s)	40
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	178, 200, 478
PmaCI	CACGTG	1 cut(s)	408
PmlI	CACGTG	1 cut(s)	408
Ppu21I	YACGTR	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	327
PspCI	CACGTG	1 cut(s)	408
PspEI	GGTNACC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	356, 398
PsyI	GACNNNGTC	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	417, 516
SatI	GCNGC	3 cut(s)	177, 199, 477
Sau3AI	GATC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	9 cut(s)	78, 113, 122, 216, 384, 398, 410, 423, 451
SfaNI	GCATC	1 cut(s)	299
SgrAI	CRCCGGYG	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	39
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	3 cut(s)	206, 455, 511
SsiI	CCGC	7 cut(s)	177, 199, 265, 303, 468, 474, 477
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	2 cut(s)	210, 402
TasI	AATT	3 cut(s)	206, 455, 511
TauI	GCSGC	3 cut(s)	179, 201, 479
Tru1I	TTAA	2 cut(s)	417, 516
Tru9I	TTAA	2 cut(s)	417, 516
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	103, 145
Tth111I	GACNNNGTC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	511
XceI	RCATGY	1 cut(s)	375
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.