pycom02g18240

K homology RNA-binding domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
16537863 .. 16540416
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g18240.9

Sequence Viewer

Length: 1230 bp
ATGAATTTAGGGACTTATTTAACCGGAAAAATAATTCAGGAACTTAATTTTCACTCAATAATTTATAATTTATACTATATATATAATATTGTCATTCCAATTCGCTACAGACAAGAAAAACCCTTCCCTTTCACGACAAGTTTTATTTCCGCCGAACAAAAACCAAATCCAAACAGAAACCGAATCAGAAACGAAATGGCGCAACCAGGCCAGATGCCCGTACACCCCCAAATGCCACCCGACCCCCAAGTACCCATACCCGGATCCGAACCCGCCCATCGGACCTCCCTGAAGCGCCTCCGAGAGGACGAGTTTGCTGTGGTGTTATCCGGACAGGAGCTCCAGGAACCCGGCCCGAAGCGCCGGGCCAAGGCCCAGGACGTCCTCTTCAGAATCGTCGTCCCCTCTCGGCAGATCGGAAAAGTAATAGGGAAGGAGGGGTGCCGAATCCAGAAGATTCGCGAAGAGACCAAGGCCAATATCAAAATCGCCGACGCCATTGCTAGACACGAGGAACGTGTGATTATAATAAGCTCAAAGGATAGTGATGATTCGAGTAGTGATGCTGAGAAAGCGCTGCAGCAGATAGCTGGGTTGATTCTGAAGGAAGATGATAGTGGTACTGAGGCAGCAAAAGTTGGTGCAGGACATGTGGCTGCTAATACAATAAGACTTTTGATTGCTGGGTCACAAGCAGGTTCTTTGATTGGGATGTCTGGCCAGAATATTGAGAAATTGAGAAATTCTTCTGGTGCCACAATCACAATCCTTGCTCCAAATCAGTTGCCTTTGTGTGCGTCTGCACATGAATCTGATCGAGTTGTACAGGTATCAGGTGATTTCCCTGCTGTTCTGAAGGCTCTGCAGGAGATTAGTGATCAACTAAGAGAAAACCCGCCCCGACAAGTGATTTCTATTAGCCCAGCCTATAACTACACAACAAGACGACCACCTCAAGTTCAACCATACATGGACCCAGCTTCAGCTGAATATATAACCTTCGAGATGGTGATATCGGAAACACTAGTTGGTGGGTTGATTGGTAGAAACGGCTCCAACATTTCAAGGATCAGAAATGAGTCTGGAGCAACGATCAAGGTTTATGGTGGAAAAGGTGAGCAAAAGCATAGGCAGGTTCAGTTTTGTGGTAGTGCTCAACAGGTATATCCATCTTTTACTTTTGTAATTTTAACTTTCTTGCTAATTTGTTGTAGACTAGACACCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

410

Amino Acids

45.22

Weight (kDa)

9.06

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 66, 527
AatII GACGTC 1 cut(s) 384
Acc36I ACCTGC 2 cut(s) 686, 1123
AccB1I GGYRCC 2 cut(s) 441, 752
AccI GTMKAC 1 cut(s) 1213
AccII CGCG 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 329
AciI CCGC 3 cut(s) 150, 273, 896
AclWI GGATC 3 cut(s) 258, 271, 1076
AcoI YGGCCR 1 cut(s) 718
AcsI RAATTY 2 cut(s) 4, 742
AcuI CTGAAG 5 cut(s) 311, 373, 623, 875, 966
AcyI GRCGYC 2 cut(s) 381, 495
AfaI GTAC 4 cut(s) 222, 252, 622, 825
AfeI AGCGCT 1 cut(s) 576
AfiI CCNNNNNNNGG 4 cut(s) 260, 279, 304, 370
AflIII ACRYGT 2 cut(s) 517, 649
AgsI TTSAA 2 cut(s) 962, 1065
AhlI ACTAGT 1 cut(s) 1024
AjnI CCWGG 3 cut(s) 205, 342, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 1011, 1043
AluBI AGCT 5 cut(s) 340, 534, 590, 980, 986
AluI AGCT 5 cut(s) 340, 534, 590, 980, 986
Alw21I GWGCWC 2 cut(s) 342, 1156
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 3 cut(s) 258, 271, 1076
Aor13HI TCCGGA 1 cut(s) 329
Aor51HI AGCGCT 1 cut(s) 576
AoxI GGCC 6 cut(s) 208, 352, 366, 372, 474, 718
ApeKI GCWGC 4 cut(s) 577, 580, 629, 656
ApoI RAATTY 2 cut(s) 4, 742
Asp700I GAANNNNTTC 1 cut(s) 745
AspLEI GCGC 4 cut(s) 202, 297, 363, 577
AspS9I GGNCC 5 cut(s) 282, 353, 366, 373, 973
AsuC2I CCSGG 3 cut(s) 261, 351, 365
AsuHPI GGTGA 3 cut(s) 848, 1021, 1127
AvaII GGWCC 2 cut(s) 282, 973
BalI TGGCCA 1 cut(s) 720
BamHI GGATCC 1 cut(s) 263
BanI GGYRCC 2 cut(s) 441, 752
BanII GRGCYC 1 cut(s) 342
BauI CACGAG 1 cut(s) 509
Bbv12I GWGCWC 2 cut(s) 342, 1156
BbvI GCAGC 4 cut(s) 564, 592, 641, 643
BccI CCATC 3 cut(s) 285, 1000, 1177
BceAI ACGGC 1 cut(s) 1066
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 3 cut(s) 207, 344, 377
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 3 cut(s) 261, 351, 365
BcoDI GTCTC 1 cut(s) 461
BcuI ACTAGT 1 cut(s) 1024
BfaI CTAG 4 cut(s) 504, 1025, 1217, 1228
BfmI CTRYAG 3 cut(s) 106, 578, 863
BfoI RGCGCY 3 cut(s) 298, 364, 578
BfuAI ACCTGC 2 cut(s) 686, 1123
BisI GCNGC 4 cut(s) 578, 581, 630, 657
BlsI GCNGC 4 cut(s) 579, 582, 631, 658
Bme1390I CCNGG 6 cut(s) 207, 261, 344, 351, 365, 377
Bme18I GGWCC 2 cut(s) 282, 973
BmgT120I GGNCC 5 cut(s) 282, 353, 366, 373, 973
BmiI GGNNCC 6 cut(s) 265, 348, 443, 754, 975, 1054
BmrFI CCNGG 6 cut(s) 207, 261, 344, 351, 365, 377
BmsI GCATC 2 cut(s) 204, 553
BpmI CTGGAG 2 cut(s) 326, 1104
BpuEI CTTGAG 1 cut(s) 939
BpuMI CCSGG 3 cut(s) 261, 351, 365
BsaHI GRCGYC 2 cut(s) 381, 495
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 3 cut(s) 369, 375, 471
BsaWI WCCGGW 2 cut(s) 23, 329
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 279, 304, 370
Bse3DI GCAATG 1 cut(s) 498
BseAI TCCGGA 1 cut(s) 329
BseBI CCWGG 3 cut(s) 207, 344, 377
BseDI CCNNGG 3 cut(s) 369, 375, 471
BseGI GGATG 1 cut(s) 717
BseLI CCNNNNNNNGG 4 cut(s) 260, 279, 304, 370
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 2 cut(s) 558, 615
BseXI GCAGC 4 cut(s) 564, 592, 641, 643
BseYI CCCAGC 4 cut(s) 590, 683, 922, 976
BsgI GTGCAG 2 cut(s) 663, 786
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 6 cut(s) 210, 354, 368, 374, 476, 720
BshNI GGYRCC 2 cut(s) 441, 752
BsiHKAI GWGCWC 2 cut(s) 342, 1156
BsiSI CCGG 5 cut(s) 24, 261, 330, 351, 364
BslFI GGGAC 2 cut(s) 25, 386
BslI CCNNNNNNNGG 4 cut(s) 260, 279, 304, 370
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 2 cut(s) 25, 386
BsnI GGCC 6 cut(s) 210, 354, 368, 374, 476, 720
Bso31I GGTCTC 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 342, 1156
Bsp13I TCCGGA 1 cut(s) 329
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 6 cut(s) 263, 414, 814, 877, 1068, 1092
Bsp68I TCGCGA 1 cut(s) 462
BspACI CCGC 3 cut(s) 150, 273, 896
BspANI GGCC 6 cut(s) 210, 354, 368, 374, 476, 720
BspCNI CTCAG 2 cut(s) 559, 616
BspEI TCCGGA 1 cut(s) 329
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 6 cut(s) 265, 348, 443, 754, 975, 1054
BspMAI CTGCAG 2 cut(s) 582, 867
BspMI ACCTGC 2 cut(s) 686, 1123
BspPI GGATC 3 cut(s) 258, 271, 1076
BspT107I GGYRCC 2 cut(s) 441, 752
BspTNI GGTCTC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 498
BsrGI TGTACA 1 cut(s) 823
BssECI CCNNGG 3 cut(s) 369, 375, 471
BssMI GATC 6 cut(s) 263, 414, 814, 877, 1068, 1092
BssNI GRCGYC 2 cut(s) 381, 495
BssSI CACGAG 1 cut(s) 509
BssT1I CCWWGG 2 cut(s) 369, 471
Bst2BI CACGAG 1 cut(s) 509
Bst2UI CCWGG 3 cut(s) 207, 344, 377
Bst6I CTCTTC 2 cut(s) 392, 459
BstACI GRCGYC 2 cut(s) 381, 495
BstAUI TGTACA 1 cut(s) 823
BstDEI CTNAG 3 cut(s) 567, 624, 884
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 717
BstFNI CGCG 1 cut(s) 462
BstH2I RGCGCY 3 cut(s) 298, 364, 578
BstHHI GCGC 4 cut(s) 202, 297, 363, 577
BstKTI GATC 6 cut(s) 266, 417, 817, 880, 1071, 1095
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 6 cut(s) 263, 414, 814, 877, 1068, 1092
BstMWI GCNNNNNNNGC 2 cut(s) 360, 572
BstNI CCWGG 3 cut(s) 207, 344, 377
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 6 cut(s) 205, 259, 342, 349, 363, 375
BstSFI CTRYAG 3 cut(s) 106, 578, 863
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 4 cut(s) 564, 592, 641, 643
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 6 cut(s) 210, 354, 368, 374, 476, 720
BtsCI GGATG 1 cut(s) 717
BtuMI TCGCGA 1 cut(s) 462
BveI ACCTGC 2 cut(s) 686, 1123
CfoI GCGC 4 cut(s) 202, 297, 363, 577
Cfr13I GGNCC 5 cut(s) 282, 353, 366, 373, 973
CseI GACGC 2 cut(s) 503, 786
Csp6I GTAC 4 cut(s) 221, 251, 621, 824
CviAII CATG 3 cut(s) 650, 806, 970
CviQI GTAC 4 cut(s) 221, 251, 621, 824
DdeI CTNAG 3 cut(s) 567, 624, 884
DpnI GATC 6 cut(s) 265, 416, 816, 879, 1070, 1094
DpnII GATC 6 cut(s) 263, 414, 814, 877, 1068, 1092
EaeI YGGCCR 1 cut(s) 718
Eam1104I CTCTTC 2 cut(s) 392, 459
EarI CTCTTC 2 cut(s) 392, 459
EciI GGCGGA 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 2 cut(s) 369, 471
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 461
Eco32I GATATC 1 cut(s) 1014
Eco47I GGWCC 2 cut(s) 282, 973
Eco47III AGCGCT 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 5 cut(s) 311, 373, 623, 875, 966
EcoICRI GAGCTC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoRII CCWGG 3 cut(s) 205, 342, 375
EcoRV GATATC 1 cut(s) 1014
EcoT14I CCWWGG 2 cut(s) 369, 471
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 2 cut(s) 369, 471
FaeI CATG 3 cut(s) 653, 809, 973
FaqI GGGAC 2 cut(s) 25, 386
FatI CATG 3 cut(s) 649, 805, 969
FauI CCCGC 2 cut(s) 280, 903
FbaI TGATCA 1 cut(s) 877
FblI GTMKAC 1 cut(s) 1213
Fnu4HI GCNGC 4 cut(s) 578, 581, 630, 657
FokI GGATG 1 cut(s) 724
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 4 cut(s) 578, 581, 630, 657
FspBI CTAG 4 cut(s) 504, 1025, 1217, 1228
GlaI GCGC 4 cut(s) 201, 296, 362, 576
GluI GCNGC 4 cut(s) 578, 581, 630, 657
GsaI CCCAGC 4 cut(s) 594, 687, 926, 980
GsuI CTGGAG 2 cut(s) 326, 1104
HaeII RGCGCY 3 cut(s) 298, 364, 578
HaeIII GGCC 6 cut(s) 210, 354, 368, 374, 476, 720
HapII CCGG 5 cut(s) 24, 261, 330, 351, 364
HgaI GACGC 2 cut(s) 503, 786
HhaI GCGC 4 cut(s) 202, 297, 363, 577
Hin1I GRCGYC 2 cut(s) 381, 495
Hin1II CATG 3 cut(s) 653, 809, 973
Hin6I GCGC 4 cut(s) 200, 295, 361, 575
HinP1I GCGC 4 cut(s) 200, 295, 361, 575
HinfI GANTC 8 cut(s) 183, 393, 447, 457, 551, 598, 809, 1079
HpaII CCGG 5 cut(s) 24, 261, 330, 351, 364
HphI GGTGA 3 cut(s) 848, 1021, 1127
Hpy166II GTNNAC 2 cut(s) 223, 1214
Hpy188III TCNNGA 7 cut(s) 38, 133, 330, 451, 461, 1003, 1083
Hpy8I GTNNAC 2 cut(s) 223, 1214
Hpy99I CGWCG 2 cut(s) 401, 497
HpyAV CCTTC 5 cut(s) 133, 427, 598, 850, 1009
HpyCH4IV ACGT 2 cut(s) 381, 517
HpyCH4V TGCA 4 cut(s) 580, 644, 803, 865
HpyF10VI GCNNNNNNNGC 2 cut(s) 360, 572
HpyF3I CTNAG 3 cut(s) 567, 624, 884
HpySE526I ACGT 2 cut(s) 381, 517
Hsp92I GRCGYC 2 cut(s) 381, 495
Hsp92II CATG 3 cut(s) 653, 809, 973
HspAI GCGC 4 cut(s) 200, 295, 361, 575
Kpn2I TCCGGA 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 6 cut(s) 263, 414, 814, 877, 1068, 1092
LmnI GCTCC 5 cut(s) 337, 345, 778, 1058, 1085
Lsp1109I GCAGC 4 cut(s) 564, 592, 641, 643
LweI GCATC 2 cut(s) 204, 553
MaeI CTAG 4 cut(s) 504, 1025, 1217, 1228
MaeII ACGT 2 cut(s) 381, 517
MaeIII GTNAC 1 cut(s) 687
MalI GATC 6 cut(s) 265, 416, 816, 879, 1070, 1094
MboI GATC 6 cut(s) 263, 414, 814, 877, 1068, 1092
MboII GAAGA 5 cut(s) 379, 466, 476, 620, 738
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 2 cut(s) 342, 1156
MlsI TGGCCA 1 cut(s) 720
MluNI TGGCCA 1 cut(s) 720
MlyI GAGTC 1 cut(s) 1088
MmeI TCCRAC 1 cut(s) 1080
MnlI CCTC 9 cut(s) 295, 298, 308, 395, 415, 430, 505, 619, 963
Mox20I TGGCCA 1 cut(s) 720
MroI TCCGGA 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 745
MscI TGGCCA 1 cut(s) 720
MseI TTAA 3 cut(s) 20, 45, 1190
Msp20I TGGCCA 1 cut(s) 720
MspA1I CMGCKG 1 cut(s) 986
MspI CCGG 5 cut(s) 24, 261, 330, 351, 364
MspR9I CCNGG 6 cut(s) 207, 261, 344, 351, 365, 377
MvaI CCWGG 3 cut(s) 207, 344, 377
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 2 cut(s) 360, 572
NciI CCSGG 3 cut(s) 261, 351, 365
NdeII GATC 6 cut(s) 263, 414, 814, 877, 1068, 1092
NlaIII CATG 3 cut(s) 653, 809, 973
NlaIV GGNNCC 6 cut(s) 265, 348, 443, 754, 975, 1054
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 687
NruI TCGCGA 1 cut(s) 462
NspI RCATGY 1 cut(s) 653
PciI ACATGT 1 cut(s) 649
PdmI GAANNNNTTC 1 cut(s) 745
PfeI GAWTC 7 cut(s) 183, 393, 447, 457, 551, 598, 809
PfoI TCCNGGA 1 cut(s) 342
PkrI GCNGC 4 cut(s) 579, 582, 631, 658
PleI GAGTC 1 cut(s) 1087
PpsI GAGTC 1 cut(s) 1087
PscI ACATGT 1 cut(s) 649
PsiI TTATAA 2 cut(s) 66, 527
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 3 cut(s) 205, 342, 375
PspFI CCCAGC 4 cut(s) 590, 683, 922, 976
PspGI CCWGG 3 cut(s) 205, 342, 375
PspN4I GGNNCC 6 cut(s) 265, 348, 443, 754, 975, 1054
PspPI GGNCC 5 cut(s) 282, 353, 366, 373, 973
PstI CTGCAG 2 cut(s) 582, 867
PsuI RGATCY 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 986
RruI TCGCGA 1 cut(s) 462
RsaI GTAC 4 cut(s) 222, 252, 622, 825
RsaNI GTAC 4 cut(s) 221, 251, 621, 824
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 3 cut(s) 20, 45, 1190
SatI GCNGC 4 cut(s) 578, 581, 630, 657
Sau3AI GATC 6 cut(s) 263, 414, 814, 877, 1068, 1092
Sau96I GGNCC 5 cut(s) 282, 353, 366, 373, 973
SchI GAGTC 1 cut(s) 1088
ScrFI CCNGG 6 cut(s) 207, 261, 344, 351, 365, 377
SduI GDGCHC 2 cut(s) 342, 1156
SfaNI GCATC 2 cut(s) 204, 553
SfcI CTRYAG 3 cut(s) 106, 578, 863
SinI GGWCC 2 cut(s) 282, 973
SmlI CTYRAG 1 cut(s) 954
SmoI CTYRAG 1 cut(s) 954
SpeI ACTAGT 1 cut(s) 1024
SsiI CCGC 3 cut(s) 150, 273, 896
SspI AATATT 2 cut(s) 88, 727
SspMI CTAG 4 cut(s) 504, 1025, 1217, 1228
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 6 cut(s) 205, 259, 342, 349, 363, 375
StyI CCWWGG 2 cut(s) 369, 471
TaiI ACGT 2 cut(s) 384, 520
TaqI TCGA 3 cut(s) 554, 817, 1002
TatI WGTACW 1 cut(s) 823
TfiI GAWTC 7 cut(s) 183, 393, 447, 457, 551, 598, 809
Tru1I TTAA 3 cut(s) 20, 45, 1190
Tru9I TTAA 3 cut(s) 20, 45, 1190
TseFI GTSAC 1 cut(s) 687
TseI GCWGC 4 cut(s) 577, 580, 629, 656
Tsp45I GTSAC 1 cut(s) 687
TspDTI ATGAA 2 cut(s) 17, 822
VpaK11BI GGWCC 2 cut(s) 282, 973
XagI CCTNNNNNAGG 1 cut(s) 302
XapI RAATTY 2 cut(s) 4, 742
XceI RCATGY 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 1213
XmnI GAANNNNTTC 1 cut(s) 745
XspI CTAG 4 cut(s) 504, 1025, 1217, 1228
ZraI GACGTC 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.