Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009714

Physical Location & Seq

Genomic Coordinates Reverse (-)

40620094 .. 40624149

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG185800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGGAGCCCGGCCAAATGCCCATATACCCCCAACAAATCCAAATGCCACCCACCTTCATACCCATACCCGCCTCCCAACCCGCGCACCCGCCCTCCATGAAGCGCCGCCGCGACGACGATTTTCCGCCGATGCAAATCGGGCCGGAACCCCTGGACCCAGCCCCAAAGCGCCGGGCCAAGGCCCAAGACGTCATCTTCCGAGTCGTGGTCCCGTCCAGACAGATCGGCAAGGTCATCGGCAAAGAAGGCTGCCGAATCCAGAAGATTCGTGAAGACTCCAAGGCCACCATCAAAATCGCCGACGCCATAGCTAGGCACGAGGAGCGTGTGATTATAATAAGCTCAAAGGATGGTGATGAAGATACTACTGATGCCGAGAATGCGCTGCAGCAAATAGCTGGCTTAATTCTCAAGGATGATGAGAATAGTGCTGATGCGGCAAAAGTTGGTGCGGGACATGTGGCTGCGAATACGATAAGACTTTTGATTGCTGGTTCCCAAGCAGGTTCCTTAATTGGGATGTCTGGTCAGAATATTGAGAAACTGAGGAACTCCTCTGGGGCCACAATTACAATCCTTGCTCCAAGCCAGTTGCCTTTGTGTGCTTCTGCCCATGAATCTGATCGAGTGGTACAGATATCAGGTGATGTCCCTGCTGTTCAGAAAGGTCTGGAGGAGATTGGTTGTCAACTAAGGTTTTACATTGAATTCGTTTTTTGTCCCAAACTGTTCTGGATCATGTTTAGTTTTGGCAGAATACTCAATTTTGTTTTTCCTTTCTATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

263

Amino Acids

28.8

Weight (kDa)

6.91

Isoelectric Point (pI)

60.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	67 - 119	1.1e-11	KH domain
KH_1	PF00013	159 - 228	1e-12	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750
malus_domestica	MD00G1041200.v1.1
prunus_persica	Prupe.2G125700_v2.0.a1
pyrus_communis	pycom02g18240
rosa_chinensis	RchiOBHm_Chr1g0346751
rosa_laevigata	RLG00000028782
rosa_multiflora	Rmu_sc0003232.1_g000006
rosa_roxburghii	Rroxscaffold_4G00308410
rosa_rugosa	Rorug01G0182500 Rorug01G0182600
rosa_samantha	Rh1AG201100 Rh1BG167300 Rh1CG185800 Rh1DG198100 Rh4BG074300 Rh5DG368600
rosa_wichuraiana	Rw1G016850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AatII	GACGTC	1 cut(s)	195
Acc36I	ACCTGC	1 cut(s)	497
AccII	CGCG	2 cut(s)	86, 114
AciI	CCGC	9 cut(s)	5, 72, 84, 92, 109, 112, 128, 440, 455
AclWI	GGATC	1 cut(s)	746
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	710
AcyI	GRCGYC	2 cut(s)	192, 306
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	4 cut(s)	181, 208, 315, 519
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	710
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	3 cut(s)	314, 345, 401
AluI	AGCT	3 cut(s)	314, 345, 401
AlwI	GGATC	1 cut(s)	746
AoxI	GGCC	6 cut(s)	13, 143, 177, 183, 285, 564
ApeKI	GCWGC	4 cut(s)	252, 388, 391, 467
ApoI	RAATTY	1 cut(s)	710
AspLEI	GCGC	4 cut(s)	88, 108, 174, 388
AspS9I	GGNCC	6 cut(s)	143, 157, 177, 184, 211, 564
AsuC2I	CCSGG	2 cut(s)	12, 176
AsuHPI	GGTGA	2 cut(s)	368, 659
AvaII	GGWCC	2 cut(s)	157, 211
BanII	GRGCYC	1 cut(s)	12
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	4 cut(s)	239, 375, 403, 454
BccI	CCATC	2 cut(s)	299, 347
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	155
BcnI	CCSGG	2 cut(s)	12, 176
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	389
BfoI	RGCGCY	2 cut(s)	109, 175
BfuAI	ACCTGC	1 cut(s)	497
BisI	GCNGC	7 cut(s)	109, 112, 253, 389, 392, 441, 468
BlsI	GCNGC	7 cut(s)	110, 113, 254, 390, 393, 442, 469
Bme1390I	CCNGG	3 cut(s)	12, 155, 176
Bme18I	GGWCC	2 cut(s)	157, 211
BmgT120I	GGNCC	6 cut(s)	143, 157, 177, 184, 211, 564
BmiI	GGNNCC	7 cut(s)	9, 150, 159, 213, 499, 511, 565
BmrFI	CCNGG	3 cut(s)	12, 155, 176
BmsI	GCATC	3 cut(s)	123, 364, 427
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	12, 176
BsaBI	GATNNNNATC	1 cut(s)	137
BsaHI	GRCGYC	2 cut(s)	192, 306
BsaJI	CCNNGG	3 cut(s)	153, 180, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 208, 315, 519
Bse1I	ACTGG	1 cut(s)	592
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	3 cut(s)	153, 180, 282
BseGI	GGATG	3 cut(s)	358, 424, 528
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	4 cut(s)	181, 208, 315, 519
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	3 cut(s)	338, 547, 692
BseXI	GCAGC	4 cut(s)	239, 375, 403, 454
BseYI	CCCAGC	1 cut(s)	160
Bsh1236I	CGCG	2 cut(s)	86, 114
BshFI	GGCC	6 cut(s)	15, 145, 179, 185, 287, 566
BsiSI	CCGG	3 cut(s)	12, 146, 175
BslFI	GGGAC	4 cut(s)	197, 471, 638, 708
BslI	CCNNNNNNNGG	4 cut(s)	181, 208, 315, 519
BsmFI	GGGAC	4 cut(s)	197, 471, 638, 708
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	6 cut(s)	15, 145, 179, 185, 287, 566
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	225, 625, 738
BspACI	CCGC	9 cut(s)	5, 72, 84, 92, 109, 112, 128, 440, 455
BspANI	GGCC	6 cut(s)	15, 145, 179, 185, 287, 566
BspCNI	CTCAG	1 cut(s)	540
BspFNI	CGCG	2 cut(s)	86, 114
BspLI	GGNNCC	7 cut(s)	9, 150, 159, 213, 499, 511, 565
BspMAI	CTGCAG	1 cut(s)	393
BspMI	ACCTGC	1 cut(s)	497
BspPI	GGATC	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	3 cut(s)	153, 180, 282
BssMI	GATC	3 cut(s)	225, 625, 738
BssNI	GRCGYC	2 cut(s)	192, 306
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	2 cut(s)	180, 282
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	732
BstACI	GRCGYC	2 cut(s)	192, 306
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	3 cut(s)	548, 695, 789
BstF5I	GGATG	3 cut(s)	358, 424, 528
BstFNI	CGCG	2 cut(s)	86, 114
BstH2I	RGCGCY	2 cut(s)	109, 175
BstHHI	GCGC	4 cut(s)	88, 108, 174, 388
BstKTI	GATC	3 cut(s)	228, 628, 741
BstMBI	GATC	3 cut(s)	225, 625, 738
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 249, 325, 383, 440
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	10, 153, 174
BstSFI	CTRYAG	1 cut(s)	389
BstUI	CGCG	2 cut(s)	86, 114
BstV1I	GCAGC	4 cut(s)	239, 375, 403, 454
BstV2I	GAAGAC	1 cut(s)	282
BsuRI	GGCC	6 cut(s)	15, 145, 179, 185, 287, 566
BtsCI	GGATG	3 cut(s)	358, 424, 528
BveI	ACCTGC	1 cut(s)	497
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	4 cut(s)	88, 108, 174, 388
Cfr13I	GGNCC	6 cut(s)	143, 157, 177, 184, 211, 564
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	4 cut(s)	100, 461, 617, 742
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	3 cut(s)	548, 695, 789
DpnI	GATC	3 cut(s)	227, 627, 740
DpnII	GATC	3 cut(s)	225, 625, 738
EaeI	YGGCCR	1 cut(s)	13
EciI	GGCGGA	2 cut(s)	20, 117
Eco130I	CCWWGG	2 cut(s)	180, 282
Eco24I	GRGCYC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	2 cut(s)	157, 211
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	642
EcoT14I	CCWWGG	2 cut(s)	180, 282
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	2 cut(s)	180, 282
FaeI	CATG	4 cut(s)	103, 464, 620, 745
FaqI	GGGAC	4 cut(s)	197, 471, 638, 708
FatI	CATG	4 cut(s)	99, 460, 616, 741
FauI	CCCGC	4 cut(s)	79, 91, 99, 448
Fnu4HI	GCNGC	7 cut(s)	109, 112, 253, 389, 392, 441, 468
FokI	GGATG	3 cut(s)	365, 431, 535
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	7 cut(s)	109, 112, 253, 389, 392, 441, 468
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	4 cut(s)	87, 107, 173, 387
GluI	GCNGC	7 cut(s)	109, 112, 253, 389, 392, 441, 468
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	695
HaeII	RGCGCY	2 cut(s)	109, 175
HaeIII	GGCC	6 cut(s)	15, 145, 179, 185, 287, 566
HapII	CCGG	3 cut(s)	12, 146, 175
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	4 cut(s)	88, 108, 174, 388
Hin1I	GRCGYC	2 cut(s)	192, 306
Hin1II	CATG	4 cut(s)	103, 464, 620, 745
Hin6I	GCGC	4 cut(s)	86, 106, 172, 386
HinP1I	GCGC	4 cut(s)	86, 106, 172, 386
HincII	GTYRAC	1 cut(s)	692
HindII	GTYRAC	1 cut(s)	692
HinfI	GANTC	5 cut(s)	204, 258, 268, 278, 620
HpaII	CCGG	3 cut(s)	12, 146, 175
HphI	GGTGA	2 cut(s)	368, 659
Hpy166II	GTNNAC	1 cut(s)	692
Hpy188I	TCNGA	4 cut(s)	203, 534, 625, 666
Hpy188III	TCNNGA	5 cut(s)	219, 262, 272, 674, 736
Hpy8I	GTNNAC	1 cut(s)	692
Hpy99I	CGWCG	3 cut(s)	119, 122, 308
HpyAV	CCTTC	2 cut(s)	67, 242
HpyCH4III	ACNGT	1 cut(s)	732
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	136, 391
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 249, 325, 383, 440
HpyF3I	CTNAG	3 cut(s)	548, 695, 789
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	192, 306
Hsp92II	CATG	4 cut(s)	103, 464, 620, 745
HspAI	GCGC	4 cut(s)	86, 106, 172, 386
Kzo9I	GATC	3 cut(s)	225, 625, 738
LmnI	GCTCC	3 cut(s)	7, 325, 589
Lsp1109I	GCAGC	4 cut(s)	239, 375, 403, 454
LweI	GCATC	3 cut(s)	123, 364, 427
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	192
MalI	GATC	3 cut(s)	227, 627, 740
MboI	GATC	3 cut(s)	225, 625, 738
MboII	GAAGA	4 cut(s)	190, 277, 287, 374
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	5 cut(s)	408, 516, 570, 710, 766
MlyI	GAGTC	2 cut(s)	213, 272
MnlI	CCTC	6 cut(s)	85, 106, 316, 543, 568, 670
MseI	TTAA	2 cut(s)	407, 515
MspI	CCGG	3 cut(s)	12, 146, 175
MspR9I	CCNGG	3 cut(s)	12, 155, 176
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	2 cut(s)	86, 114
MwoI	GCNNNNNNNGC	5 cut(s)	142, 249, 325, 383, 440
NciI	CCSGG	2 cut(s)	12, 176
NdeII	GATC	3 cut(s)	225, 625, 738
NlaIII	CATG	4 cut(s)	103, 464, 620, 745
NlaIV	GGNNCC	7 cut(s)	9, 150, 159, 213, 499, 511, 565
NmeAIII	GCCGAG	1 cut(s)	403
NspI	RCATGY	1 cut(s)	464
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	258, 268, 620
PkrI	GCNGC	7 cut(s)	110, 113, 254, 390, 393, 442, 469
PleI	GAGTC	2 cut(s)	212, 272
PpsI	GAGTC	2 cut(s)	212, 272
PscI	ACATGT	1 cut(s)	460
PsiI	TTATAA	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	7 cut(s)	9, 150, 159, 213, 499, 511, 565
PspPI	GGNCC	6 cut(s)	143, 157, 177, 184, 211, 564
PstI	CTGCAG	1 cut(s)	393
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	407, 515
SatI	GCNGC	7 cut(s)	109, 112, 253, 389, 392, 441, 468
Sau3AI	GATC	3 cut(s)	225, 625, 738
Sau96I	GGNCC	6 cut(s)	143, 157, 177, 184, 211, 564
SchI	GAGTC	2 cut(s)	213, 272
ScrFI	CCNGG	3 cut(s)	12, 155, 176
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	3 cut(s)	123, 364, 427
SfcI	CTRYAG	1 cut(s)	389
SinI	GGWCC	2 cut(s)	157, 211
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	5 cut(s)	408, 516, 570, 710, 766
SsiI	CCGC	9 cut(s)	5, 72, 84, 92, 109, 112, 128, 440, 455
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	3 cut(s)	10, 153, 174
StyI	CCWWGG	2 cut(s)	180, 282
TaaI	ACNGT	1 cut(s)	732
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	628
TasI	AATT	5 cut(s)	408, 516, 570, 710, 766
TauI	GCSGC	3 cut(s)	111, 114, 443
TfiI	GAWTC	3 cut(s)	258, 268, 620
Tru1I	TTAA	2 cut(s)	407, 515
Tru9I	TTAA	2 cut(s)	407, 515
TseI	GCWGC	4 cut(s)	252, 388, 391, 467
TspDTI	ATGAA	4 cut(s)	49, 116, 375, 633
VpaK11BI	GGWCC	2 cut(s)	157, 211
XapI	RAATTY	1 cut(s)	710
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	1 cut(s)	315
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.