Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009714

Physical Location & Seq

Genomic Coordinates Reverse (-)

39012300 .. 39013879

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG198100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGGAGCCCGGCCAAATGCCCATATACCCCCAACAAATCCAAATACCACCCACCTTCATACCCATACCCGCCTCCCAACCCGCGCACCTGCCCTCCATGAAGCGCCGCCGCGACGACGATTTTCCGCCGATGCAAATCGGGCCGGAACCCCTGGACCCAGCCCCAAAGCGCCGGGCCAAGGCCCAAGACGTCATCTTCAGAGTCGTGGTCCCGTCCAGACAGATCGGCAAGGTCATCGGCAAAGAAGGCTGCCGAATCCAGAAGATTCGTGAAGACTCCAAGGCCACCATCAAAATCGCCGACGCCATAGCTAGACACGAGGAGCGTGTGATTATAATAAGCTCAAAGGATAGTGATGAAGGTACTACTGATGCCGAGAATGCGCTGCAGCAAATAGCTGGCTTAATTCTTAAGGATGATGAGAATGGTACTGAGGCGGCAAAAGTTGGTGCAGGACATGTGGCTGCAAATACAATAAGACTTTTGATTGCTGGTTCCCAAGCAGGTTCTTTAATTGGGATGTCTGGTCAGAATATTGAGAAACTGAGGAACTCCTCTGGGGCCACAATCACAATCCTTGCTCCAAGCCAGTTGCCTTTGTGTGCTTCTGCCCATGAATCTGATCGAGTGGTACAGATATCAGGTGATGTCCCTGCTGTTCAGAAAGGTCTGGAGGAGATTGGTTGTCAACTAAGAGAAAACCCGCCTCGGCAAGTGATTTCTATCAGTCCCGCCTATAACTATACAGCAATTAGGCCACCTCAAGTTCAACCATACATGGACCCAACTTCAGGACAACCAATCTTGCAGCTGAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

274

Amino Acids

29.58

Weight (kDa)

6.91

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	67 - 133	7.9e-12	KH domain
KH_1	PF00013	159 - 228	1.1e-12	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750
malus_domestica	MD00G1041200.v1.1
prunus_persica	Prupe.2G125700_v2.0.a1
pyrus_communis	pycom02g18240
rosa_chinensis	RchiOBHm_Chr1g0346751
rosa_laevigata	RLG00000028782
rosa_multiflora	Rmu_sc0003232.1_g000006
rosa_roxburghii	Rroxscaffold_4G00308410
rosa_rugosa	Rorug01G0182500 Rorug01G0182600
rosa_samantha	Rh1AG201100 Rh1BG167300 Rh1CG185800 Rh1DG198100 Rh4BG074300 Rh5DG368600
rosa_wichuraiana	Rw1G016850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AarI	CACCTGC	1 cut(s)	99
AatII	GACGTC	1 cut(s)	195
Acc36I	ACCTGC	2 cut(s)	99, 497
AccII	CGCG	2 cut(s)	86, 114
AciI	CCGC	9 cut(s)	5, 72, 84, 109, 112, 128, 440, 707, 735
AcoI	YGGCCR	1 cut(s)	13
AcuI	CTGAAG	2 cut(s)	184, 777
AcyI	GRCGYC	2 cut(s)	192, 306
AfaI	GTAC	3 cut(s)	367, 433, 636
AfiI	CCNNNNNNNGG	2 cut(s)	181, 794
AflII	CTTAAG	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	773
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	4 cut(s)	314, 345, 401, 814
AluI	AGCT	4 cut(s)	314, 345, 401, 814
AoxI	GGCC	7 cut(s)	13, 143, 177, 183, 285, 564, 758
ApeKI	GCWGC	5 cut(s)	252, 388, 391, 467, 811
AspLEI	GCGC	4 cut(s)	88, 108, 174, 388
AspS9I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
AsuC2I	CCSGG	2 cut(s)	12, 176
AsuHPI	GGTGA	1 cut(s)	659
AvaII	GGWCC	3 cut(s)	157, 211, 784
BanII	GRGCYC	1 cut(s)	12
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	4 cut(s)	239, 375, 403, 454
BccI	CCATC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	155
BcnI	CCSGG	2 cut(s)	12, 176
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	389
BfoI	RGCGCY	2 cut(s)	109, 175
BfrI	CTTAAG	1 cut(s)	413
BfuAI	ACCTGC	2 cut(s)	99, 497
BisI	GCNGC	8 cut(s)	109, 112, 253, 389, 392, 441, 468, 812
BlsI	GCNGC	8 cut(s)	110, 113, 254, 390, 393, 442, 469, 813
Bme1390I	CCNGG	3 cut(s)	12, 155, 176
Bme18I	GGWCC	3 cut(s)	157, 211, 784
BmgT120I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
BmiI	GGNNCC	7 cut(s)	9, 150, 159, 213, 499, 565, 786
BmrFI	CCNGG	3 cut(s)	12, 155, 176
BmsI	GCATC	2 cut(s)	123, 364
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	750
BpuMI	CCSGG	2 cut(s)	12, 176
BsaBI	GATNNNNATC	2 cut(s)	137, 725
BsaHI	GRCGYC	2 cut(s)	192, 306
BsaJI	CCNNGG	4 cut(s)	153, 180, 282, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 794
Bse1I	ACTGG	1 cut(s)	592
Bse8I	GATNNNNATC	2 cut(s)	137, 725
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	4 cut(s)	153, 180, 282, 710
BseGI	GGATG	2 cut(s)	424, 528
BseJI	GATNNNNATC	2 cut(s)	137, 725
BseLI	CCNNNNNNNGG	2 cut(s)	181, 794
BseMII	CTCAG	2 cut(s)	426, 539
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	3 cut(s)	338, 547, 692
BseXI	GCAGC	4 cut(s)	239, 375, 403, 454
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	2 cut(s)	86, 114
BshFI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
BsiSI	CCGG	3 cut(s)	12, 146, 175
BslFI	GGGAC	3 cut(s)	197, 638, 717
BslI	CCNNNNNNNGG	2 cut(s)	181, 794
BsmFI	GGGAC	3 cut(s)	197, 638, 717
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	225, 625
BspACI	CCGC	9 cut(s)	5, 72, 84, 109, 112, 128, 440, 707, 735
BspANI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
BspCNI	CTCAG	2 cut(s)	427, 540
BspFNI	CGCG	2 cut(s)	86, 114
BspLI	GGNNCC	7 cut(s)	9, 150, 159, 213, 499, 565, 786
BspMAI	CTGCAG	1 cut(s)	393
BspMI	ACCTGC	2 cut(s)	99, 497
BspTI	CTTAAG	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	4 cut(s)	153, 180, 282, 710
BssMI	GATC	2 cut(s)	225, 625
BssNI	GRCGYC	2 cut(s)	192, 306
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	2 cut(s)	180, 282
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	155
BstACI	GRCGYC	2 cut(s)	192, 306
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	3 cut(s)	435, 548, 695
BstF5I	GGATG	2 cut(s)	424, 528
BstFNI	CGCG	2 cut(s)	86, 114
BstH2I	RGCGCY	2 cut(s)	109, 175
BstHHI	GCGC	4 cut(s)	88, 108, 174, 388
BstKTI	GATC	2 cut(s)	228, 628
BstMBI	GATC	2 cut(s)	225, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 249, 383
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	10, 153, 174
BstSFI	CTRYAG	1 cut(s)	389
BstUI	CGCG	2 cut(s)	86, 114
BstV1I	GCAGC	4 cut(s)	239, 375, 403, 454
BstV2I	GAAGAC	1 cut(s)	282
BsuRI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
BtsCI	GGATG	2 cut(s)	424, 528
BveI	ACCTGC	2 cut(s)	99, 497
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	4 cut(s)	88, 108, 174, 388
Cfr13I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	3 cut(s)	366, 432, 635
CviAII	CATG	4 cut(s)	100, 461, 617, 781
CviQI	GTAC	3 cut(s)	366, 432, 635
DdeI	CTNAG	3 cut(s)	435, 548, 695
DpnI	GATC	2 cut(s)	227, 627
DpnII	GATC	2 cut(s)	225, 625
EaeI	YGGCCR	1 cut(s)	13
EciI	GGCGGA	2 cut(s)	20, 117
Eco130I	CCWWGG	2 cut(s)	180, 282
Eco24I	GRGCYC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	3 cut(s)	157, 211, 784
Eco57I	CTGAAG	2 cut(s)	184, 777
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	642
EcoT14I	CCWWGG	2 cut(s)	180, 282
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	2 cut(s)	180, 282
FaeI	CATG	4 cut(s)	103, 464, 620, 784
FaqI	GGGAC	3 cut(s)	197, 638, 717
FatI	CATG	4 cut(s)	99, 460, 616, 780
FauI	CCCGC	4 cut(s)	79, 91, 714, 742
Fnu4HI	GCNGC	8 cut(s)	109, 112, 253, 389, 392, 441, 468, 812
FokI	GGATG	2 cut(s)	431, 535
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	8 cut(s)	109, 112, 253, 389, 392, 441, 468, 812
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	4 cut(s)	87, 107, 173, 387
GluI	GCNGC	8 cut(s)	109, 112, 253, 389, 392, 441, 468, 812
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	695
HaeII	RGCGCY	2 cut(s)	109, 175
HaeIII	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
HapII	CCGG	3 cut(s)	12, 146, 175
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	4 cut(s)	88, 108, 174, 388
Hin1I	GRCGYC	2 cut(s)	192, 306
Hin1II	CATG	4 cut(s)	103, 464, 620, 784
Hin6I	GCGC	4 cut(s)	86, 106, 172, 386
HinP1I	GCGC	4 cut(s)	86, 106, 172, 386
HincII	GTYRAC	1 cut(s)	692
HindII	GTYRAC	1 cut(s)	692
HinfI	GANTC	5 cut(s)	204, 258, 268, 278, 620
HpaII	CCGG	3 cut(s)	12, 146, 175
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	1 cut(s)	692
Hpy188I	TCNGA	4 cut(s)	203, 534, 625, 666
Hpy188III	TCNNGA	5 cut(s)	219, 262, 272, 674, 795
Hpy8I	GTNNAC	1 cut(s)	692
Hpy99I	CGWCG	3 cut(s)	119, 122, 308
HpyAV	CCTTC	3 cut(s)	67, 242, 356
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	5 cut(s)	136, 391, 455, 470, 811
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 249, 383
HpyF3I	CTNAG	3 cut(s)	435, 548, 695
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	192, 306
Hsp92II	CATG	4 cut(s)	103, 464, 620, 784
HspAI	GCGC	4 cut(s)	86, 106, 172, 386
Kzo9I	GATC	2 cut(s)	225, 625
LmnI	GCTCC	3 cut(s)	7, 325, 589
Lsp1109I	GCAGC	4 cut(s)	239, 375, 403, 454
LweI	GCATC	2 cut(s)	123, 364
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	192
MalI	GATC	2 cut(s)	227, 627
MboI	GATC	2 cut(s)	225, 625
MboII	GAAGA	3 cut(s)	190, 277, 287
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	3 cut(s)	408, 516, 753
MlyI	GAGTC	2 cut(s)	213, 272
MnlI	CCTC	9 cut(s)	85, 106, 316, 430, 543, 568, 670, 720, 774
MseI	TTAA	3 cut(s)	407, 414, 515
MspA1I	CMGCKG	1 cut(s)	814
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	3 cut(s)	12, 146, 175
MspR9I	CCNGG	3 cut(s)	12, 155, 176
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	2 cut(s)	86, 114
MwoI	GCNNNNNNNGC	3 cut(s)	142, 249, 383
NciI	CCSGG	2 cut(s)	12, 176
NdeII	GATC	2 cut(s)	225, 625
NlaIII	CATG	4 cut(s)	103, 464, 620, 784
NlaIV	GGNNCC	7 cut(s)	9, 150, 159, 213, 499, 565, 786
NmeAIII	GCCGAG	2 cut(s)	403, 691
NspI	RCATGY	1 cut(s)	464
PaqCI	CACCTGC	1 cut(s)	99
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	258, 268, 620
PkrI	GCNGC	8 cut(s)	110, 113, 254, 390, 393, 442, 469, 813
PleI	GAGTC	2 cut(s)	212, 272
PpsI	GAGTC	2 cut(s)	212, 272
PscI	ACATGT	1 cut(s)	460
PsiI	TTATAA	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	7 cut(s)	9, 150, 159, 213, 499, 565, 786
PspPI	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
PstI	CTGCAG	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	814
RsaI	GTAC	3 cut(s)	367, 433, 636
RsaNI	GTAC	3 cut(s)	366, 432, 635
SaqAI	TTAA	3 cut(s)	407, 414, 515
SatI	GCNGC	8 cut(s)	109, 112, 253, 389, 392, 441, 468, 812
Sau3AI	GATC	2 cut(s)	225, 625
Sau96I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
SchI	GAGTC	2 cut(s)	213, 272
ScrFI	CCNGG	3 cut(s)	12, 155, 176
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	2 cut(s)	123, 364
SfcI	CTRYAG	1 cut(s)	389
SinI	GGWCC	3 cut(s)	157, 211, 784
SmlI	CTYRAG	2 cut(s)	413, 765
SmoI	CTYRAG	2 cut(s)	413, 765
Sse9I	AATT	3 cut(s)	408, 516, 753
SsiI	CCGC	9 cut(s)	5, 72, 84, 109, 112, 128, 440, 707, 735
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	3 cut(s)	10, 153, 174
StyI	CCWWGG	2 cut(s)	180, 282
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	628
TasI	AATT	3 cut(s)	408, 516, 753
TauI	GCSGC	3 cut(s)	111, 114, 443
TfiI	GAWTC	3 cut(s)	258, 268, 620
Tru1I	TTAA	3 cut(s)	407, 414, 515
Tru9I	TTAA	3 cut(s)	407, 414, 515
TseI	GCWGC	5 cut(s)	252, 388, 391, 467, 811
TspDTI	ATGAA	4 cut(s)	49, 116, 375, 633
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	3 cut(s)	157, 211, 784
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	1 cut(s)	315
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.