Rorug01G0182500

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009714
Physical Location & Seq
Reverse (-)
25135409 .. 25139227
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0182500.1

Sequence Viewer

Length: 1638 bp
ATGAGGCAAAGACAGAGTTCTGCAGTTTCGTCATTAGCAAATACACGCAGAACCCAAAACCCAATTCCTACAAAATCACAACAACAAGAAAAGGAAGTCCCACAGTTTGATCTGCTAGCCTCACCCAAGAACGTTTATATCTTCTGCTTGGCCTTTCGAATAGTAAATGCTCTGTTGGTTCAGACCTATTTCAACCCAGATGAGCACTGGCAAGCTCTTGAAGTTGCTCACCGCATCACTTTTGGGTTTGGCCATTTGACGTGGGAGTGGAAGAAGGGGATTCGGAGCTACTTGCATCCTTTGCTCTTTGCTTTCCTTTACAAAGTGCTTGCCTTGTTAGGTCTTGATACTCCGTGGTTCATGGTCAAGGCTCCTCGGCTATTCCAGTCCCTATTCTCTGCATTTGGTGATTTATACCTGTACAAACTCTCTGTCATCCTCTTTGGCGACCAGGTTGCAAAATGGGCTCTTTTTTCCCAATTGACAAATTGGTTTATGTTTTTCTGTCTCACTCGTACATTATCGAATAGTCTGGAGACTGTTCTTACCATTGTGAGCTTGTACTACTGGCCCTGTATCAGGCCTTCTTCCAGCAAACTTCCGTTGGAATCTAGAAAGTGGGGTCTGCTTATTGCTGCATTAGCTTGTGCTATTCGACCAACAAGTGCCATCATATGGCTTTATGTTGGGCTCCTTGAGCTATTTGTGTCACGCGATAAACTCAGATTCATATTTTTGGAGGTGGCTCCTATTGGGGTCCTGGTGCTTGGGCTTACATTTTTAATAGATCGATTGATGTACGGCTCATGGGTCTTAGTACCTCTTAATTTCCTAAGATTCAATTTTCTTTCCTCTGGTGGCGATTATTATGGAACTCACAAGTGGCACTGGTACTTCACTCAGGGATTTTCTGTCATGGTATTTTCTTTTTTACCATTTTCTATAGCTGGCATCATGCAGTCGAAACAATGGAAGCTTTCTGGCCTTATTGCATGGGTTCTGGTTCTTTATAGTGTACTAGGCCACAAAGAATTCAGGTTTGTTTTGCCTGTGCTTCCTATAGCTTTGATATTCTCTGGATACTCTTTAACTGCATTAAAAACATCAGTTTCTGGAAATGGTCAAAGGAACAAATCGGCAGATTACCATAATAAATTCTCTGCAAAAATGCTGTTGGCCATCTTTTTCTTGCTCGCTACCAATATTCCAATGGCCTTGTATATGAGTTTGGTTCATCAGAGAGGAACTGAAGATGTTACTTACTATCTGTCCAATGAAGTGGTCGAGGGAAAAGTAACAGACATACTTTTTCTAATGCCTTGCCACGCCACACCTTACTACTCTACTGTGCACCGAAACCTCCCAATGCGATTTCTAGACTGCACACCGAGTGAAGAGAAAGGAATCCCAGACGAATCAGATCAATTCATGATGGATCCTGTAGGGTTTGCATCAGAATTTGCAAAAAATTGGTCTTTACCGAGTCATATTGTATTATTTGATTCGGAAGAAAAGAAGTTACGGGATTTTCTAGTCTCCCATTCTTTCAAAGAGATACAAAGATTTTTCCATGCTCACTTCAAAGTGGATCGTGATATTCAAGCATCAGTCGTTGTATATGCTTTGACAGGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

545

Amino Acids

62.68

Weight (kDa)

9.23

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_22 PF03901 45 - 451 6.4e-119 Alg9-like mannosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 675
AccII CGCG 1 cut(s) 714
AciI CCGC 1 cut(s) 232
AclI AACGTT 1 cut(s) 132
AclWI GGATC 3 cut(s) 1430, 1443, 1596
AcoI YGGCCR 2 cut(s) 250, 1176
AcsI RAATTY 3 cut(s) 1031, 1154, 1457
AcuI CTGAAG 1 cut(s) 1269
AdeI CACNNNGTG 1 cut(s) 1391
AfaI GTAC 7 cut(s) 422, 517, 563, 800, 819, 893, 1017
AfiI CCNNNNNNNGG 2 cut(s) 579, 675
AgsI TTSAA 6 cut(s) 193, 221, 841, 1549, 1582, 1601
AjiI CACGTC 1 cut(s) 261
AjnI CCWGG 2 cut(s) 450, 759
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 8 cut(s) 215, 288, 558, 644, 700, 947, 976, 1064
AluI AGCT 8 cut(s) 215, 288, 558, 644, 700, 947, 976, 1064
Alw21I GWGCWC 2 cut(s) 207, 1353
Alw26I GTCTC 3 cut(s) 512, 530, 1540
Alw44I GTGCAC 1 cut(s) 1349
AlwI GGATC 3 cut(s) 1430, 1443, 1596
AlwNI CAGNNNCTG 1 cut(s) 1112
AoxI GGCC 8 cut(s) 150, 250, 569, 581, 982, 1021, 1176, 1212
ApaLI GTGCAC 1 cut(s) 1349
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 3 cut(s) 1031, 1154, 1457
ArsI GACNNNNNNTTYG 4 cut(s) 417, 449, 1457, 1489
AspS9I GGNCC 2 cut(s) 570, 757
AsuHPI GGTGA 3 cut(s) 114, 221, 419
AsuII TTCGAA 1 cut(s) 157
AsuNHI GCTAGC 1 cut(s) 115
AvaII GGWCC 1 cut(s) 757
BaeGI GKGCMC 1 cut(s) 1353
BalI TGGCCA 2 cut(s) 252, 1178
BamHI GGATCC 1 cut(s) 1435
BanII GRGCYC 2 cut(s) 469, 693
BarI GAAGNNNNNNTAC 2 cut(s) 568, 600
Bbv12I GWGCWC 2 cut(s) 207, 1353
BbvI GCAGC 1 cut(s) 622
BccI CCATC 3 cut(s) 677, 1187, 1426
BceAI ACGGC 1 cut(s) 817
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BciT130I CCWGG 2 cut(s) 452, 761
BciVI GTATCC 1 cut(s) 1073
BcoDI GTCTC 3 cut(s) 512, 530, 1540
BfaI CTAG 5 cut(s) 116, 612, 1019, 1376, 1532
BfmI CTRYAG 4 cut(s) 21, 942, 1059, 1440
BfuI GTATCC 1 cut(s) 1073
BisI GCNGC 1 cut(s) 636
BlsI GCNGC 1 cut(s) 637
Bme1390I CCNGG 2 cut(s) 452, 761
Bme18I GGWCC 1 cut(s) 757
BmgBI CACGTC 1 cut(s) 261
BmgT120I GGNCC 2 cut(s) 570, 757
BmiI GGNNCC 6 cut(s) 372, 692, 747, 758, 1437, 1633
BmrFI CCNGG 2 cut(s) 452, 761
BmsI GCATC 5 cut(s) 243, 304, 960, 1460, 1613
BmtI GCTAGC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 554
Bpu14I TTCGAA 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 716
Bsa29I ATCGAT 1 cut(s) 790
BsaJI CCNNGG 2 cut(s) 353, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 579, 675
Bse1I ACTGG 4 cut(s) 212, 385, 572, 893
BseBI CCWGG 2 cut(s) 452, 761
BseCI ATCGAT 1 cut(s) 790
BseDI CCNNGG 2 cut(s) 353, 374
BseGI GGATG 2 cut(s) 295, 435
BseLI CCNNNNNNNGG 2 cut(s) 579, 675
BseMII CTCAG 2 cut(s) 736, 914
BseNI ACTGG 4 cut(s) 212, 385, 572, 893
BseRI GAGGAG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 1353
BseXI GCAGC 1 cut(s) 622
BsgI GTGCAG 1 cut(s) 1366
Bsh1236I CGCG 1 cut(s) 714
BshFI GGCC 8 cut(s) 152, 252, 571, 583, 984, 1023, 1178, 1214
BshVI ATCGAT 1 cut(s) 790
BsiHKAI GWGCWC 2 cut(s) 207, 1353
BslFI GGGAC 2 cut(s) 83, 373
BslI CCNNNNNNNGG 2 cut(s) 579, 675
BsmAI GTCTC 3 cut(s) 512, 530, 1540
BsmFI GGGAC 2 cut(s) 83, 373
BsnI GGCC 8 cut(s) 152, 252, 571, 583, 984, 1023, 1178, 1214
Bsp119I TTCGAA 1 cut(s) 157
Bsp1286I GDGCHC 4 cut(s) 207, 469, 693, 1353
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 5 cut(s) 109, 787, 1420, 1435, 1588
BspACI CCGC 1 cut(s) 232
BspANI GGCC 8 cut(s) 152, 252, 571, 583, 984, 1023, 1178, 1214
BspCNI CTCAG 2 cut(s) 735, 913
BspDI ATCGAT 1 cut(s) 790
BspFNI CGCG 1 cut(s) 714
BspHI TCATGA 1 cut(s) 1428
BspLI GGNNCC 6 cut(s) 372, 692, 747, 758, 1437, 1633
BspMAI CTGCAG 1 cut(s) 25
BspOI GCTAGC 1 cut(s) 119
BspPI GGATC 3 cut(s) 1430, 1443, 1596
BspT104I TTCGAA 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 4 cut(s) 212, 385, 572, 893
BssECI CCNNGG 2 cut(s) 353, 374
BssMI GATC 5 cut(s) 109, 787, 1420, 1435, 1588
Bst2UI CCWGG 2 cut(s) 452, 761
Bst4CI ACNGT 3 cut(s) 105, 541, 1348
Bst6I CTCTTC 1 cut(s) 1389
BstAPI GCANNNNNTGC 1 cut(s) 301
BstAUI TGTACA 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 5 cut(s) 117, 213, 330, 949, 1194
BstDEI CTNAG 4 cut(s) 722, 814, 833, 900
BstDSI CCRYGG 1 cut(s) 353
BstENI CCTNNNNNAGG 1 cut(s) 577
BstF5I GGATG 2 cut(s) 295, 435
BstFNI CGCG 1 cut(s) 714
BstKTI GATC 5 cut(s) 112, 790, 1423, 1438, 1591
BstMAI GTCTC 3 cut(s) 512, 530, 1540
BstMBI GATC 5 cut(s) 109, 787, 1420, 1435, 1588
BstMWI GCNNNNNNNGC 4 cut(s) 301, 464, 641, 697
BstNI CCWGG 2 cut(s) 452, 761
BstSCI CCNGG 2 cut(s) 450, 759
BstSFI CTRYAG 4 cut(s) 21, 942, 1059, 1440
BstSLI GKGCMC 1 cut(s) 1353
BstUI CGCG 1 cut(s) 714
BstV1I GCAGC 1 cut(s) 622
BstX2I RGATCY 1 cut(s) 1435
BstXI CCANNNNNNTGG 1 cut(s) 1279
BstYI RGATCY 1 cut(s) 1435
Bsu15I ATCGAT 1 cut(s) 790
BsuI GTATCC 1 cut(s) 1073
BsuRI GGCC 8 cut(s) 152, 252, 571, 583, 984, 1023, 1178, 1214
BsuTUI ATCGAT 1 cut(s) 790
BtgI CCRYGG 1 cut(s) 353
BtrI CACGTC 1 cut(s) 261
BtsCI GGATG 2 cut(s) 295, 435
BtsIMutI CAGTG 2 cut(s) 205, 886
Cac8I GCNNGC 5 cut(s) 117, 213, 330, 949, 1194
CaiI CAGNNNCTG 1 cut(s) 1112
CciI TCATGA 1 cut(s) 1428
Cfr13I GGNCC 2 cut(s) 570, 757
ClaI ATCGAT 1 cut(s) 790
CsiI ACCWGGT 1 cut(s) 450
Csp6I GTAC 7 cut(s) 421, 516, 562, 799, 818, 892, 1016
CviAII CATG 7 cut(s) 361, 807, 916, 955, 993, 1429, 1571
CviQI GTAC 7 cut(s) 421, 516, 562, 799, 818, 892, 1016
DdeI CTNAG 4 cut(s) 722, 814, 833, 900
DpnI GATC 5 cut(s) 111, 789, 1422, 1437, 1590
DpnII GATC 5 cut(s) 109, 787, 1420, 1435, 1588
DraIII CACNNNGTG 1 cut(s) 1391
EaeI YGGCCR 2 cut(s) 250, 1176
Eam1104I CTCTTC 1 cut(s) 1389
EarI CTCTTC 1 cut(s) 1389
Eco147I AGGCCT 1 cut(s) 583
Eco24I GRGCYC 2 cut(s) 469, 693
Eco47I GGWCC 1 cut(s) 757
Eco57I CTGAAG 1 cut(s) 1269
EcoNI CCTNNNNNAGG 1 cut(s) 577
EcoO109I RGGNCCY 1 cut(s) 757
EcoRI GAATTC 1 cut(s) 1031
EcoRII CCWGG 2 cut(s) 450, 759
EcoT38I GRGCYC 2 cut(s) 469, 693
FaeI CATG 7 cut(s) 364, 810, 919, 958, 996, 1432, 1574
FaqI GGGAC 2 cut(s) 83, 373
FatI CATG 7 cut(s) 360, 806, 915, 954, 992, 1428, 1570
FauNDI CATATG 1 cut(s) 674
Fnu4HI GCNGC 1 cut(s) 636
FokI GGATG 2 cut(s) 282, 422
FriOI GRGCYC 2 cut(s) 469, 693
Fsp4HI GCNGC 1 cut(s) 636
FspBI CTAG 5 cut(s) 116, 612, 1019, 1376, 1532
GluI GCNGC 1 cut(s) 636
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 8 cut(s) 152, 252, 571, 583, 984, 1023, 1178, 1214
Hin1II CATG 7 cut(s) 364, 810, 919, 958, 996, 1432, 1574
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 8 cut(s) 280, 608, 726, 837, 1404, 1415, 1483, 1502
HphI GGTGA 3 cut(s) 114, 221, 419
Hpy166II GTNNAC 2 cut(s) 1016, 1351
Hpy188I TCNGA 7 cut(s) 183, 285, 725, 1239, 1420, 1456, 1507
Hpy8I GTNNAC 2 cut(s) 1016, 1351
HpyAV CCTTC 2 cut(s) 268, 594
HpyCH4III ACNGT 3 cut(s) 105, 541, 1348
HpyCH4IV ACGT 2 cut(s) 132, 260
HpyF10VI GCNNNNNNNGC 4 cut(s) 301, 464, 641, 697
HpyF3I CTNAG 4 cut(s) 722, 814, 833, 900
HpySE526I ACGT 2 cut(s) 132, 260
Hsp92II CATG 7 cut(s) 364, 810, 919, 958, 996, 1432, 1574
Kzo9I GATC 5 cut(s) 109, 787, 1420, 1435, 1588
LmnI GCTCC 5 cut(s) 285, 376, 696, 751, 1637
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 5 cut(s) 243, 304, 960, 1460, 1613
MabI ACCWGGT 1 cut(s) 450
MaeI CTAG 5 cut(s) 116, 612, 1019, 1376, 1532
MaeII ACGT 2 cut(s) 132, 260
MaeIII GTNAC 4 cut(s) 708, 1255, 1294, 1518
MalI GATC 5 cut(s) 111, 789, 1422, 1437, 1590
MboI GATC 5 cut(s) 109, 787, 1420, 1435, 1588
MboII GAAGA 6 cut(s) 133, 283, 579, 1262, 1406, 1520
MfeI CAATTG 1 cut(s) 479
MflI RGATCY 1 cut(s) 1435
MhlI GDGCHC 4 cut(s) 207, 469, 693, 1353
MlsI TGGCCA 2 cut(s) 252, 1178
MluNI TGGCCA 2 cut(s) 252, 1178
MlyI GAGTC 1 cut(s) 1492
MmeI TCCRAC 1 cut(s) 585
MnlI CCTC 9 cut(s) 130, 384, 449, 733, 831, 862, 1235, 1279, 1370
Mox20I TGGCCA 2 cut(s) 252, 1178
MscI TGGCCA 2 cut(s) 252, 1178
MseI TTAA 4 cut(s) 782, 825, 1088, 1097
Msp20I TGGCCA 2 cut(s) 252, 1178
MspR9I CCNGG 2 cut(s) 452, 761
MunI CAATTG 1 cut(s) 479
MvaI CCWGG 2 cut(s) 452, 761
MvnI CGCG 1 cut(s) 714
MwoI GCNNNNNNNGC 4 cut(s) 301, 464, 641, 697
NdeI CATATG 1 cut(s) 674
NdeII GATC 5 cut(s) 109, 787, 1420, 1435, 1588
NheI GCTAGC 1 cut(s) 115
NlaIII CATG 7 cut(s) 364, 810, 919, 958, 996, 1432, 1574
NlaIV GGNNCC 6 cut(s) 372, 692, 747, 758, 1437, 1633
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 708
NspV TTCGAA 1 cut(s) 157
PagI TCATGA 1 cut(s) 1428
PceI AGGCCT 1 cut(s) 583
PfeI GAWTC 7 cut(s) 280, 608, 726, 837, 1404, 1415, 1502
PflMI CCANNNNNTGG 1 cut(s) 675
PkrI GCNGC 1 cut(s) 637
PleI GAGTC 1 cut(s) 1491
PpsI GAGTC 1 cut(s) 1491
PpuMI RGGWCCY 1 cut(s) 757
Psp1406I AACGTT 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 757
Psp6I CCWGG 2 cut(s) 450, 759
PspGI CCWGG 2 cut(s) 450, 759
PspN4I GGNNCC 6 cut(s) 372, 692, 747, 758, 1437, 1633
PspPI GGNCC 2 cut(s) 570, 757
PspPPI RGGWCCY 1 cut(s) 757
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 1112
PsuI RGATCY 1 cut(s) 1435
RsaI GTAC 7 cut(s) 422, 517, 563, 800, 819, 893, 1017
RsaNI GTAC 7 cut(s) 421, 516, 562, 799, 818, 892, 1016
SaqAI TTAA 4 cut(s) 782, 825, 1088, 1097
SatI GCNGC 1 cut(s) 636
Sau3AI GATC 5 cut(s) 109, 787, 1420, 1435, 1588
Sau96I GGNCC 2 cut(s) 570, 757
SchI GAGTC 1 cut(s) 1492
ScrFI CCNGG 2 cut(s) 452, 761
SduI GDGCHC 4 cut(s) 207, 469, 693, 1353
SexAI ACCWGGT 1 cut(s) 450
SfaNI GCATC 5 cut(s) 243, 304, 960, 1460, 1613
SfcI CTRYAG 4 cut(s) 21, 942, 1059, 1440
SfuI TTCGAA 1 cut(s) 157
SinI GGWCC 1 cut(s) 757
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 1 cut(s) 232
SspI AATATT 1 cut(s) 1204
SspMI CTAG 5 cut(s) 116, 612, 1019, 1376, 1532
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 2 cut(s) 450, 759
TaaI ACNGT 3 cut(s) 105, 541, 1348
TaiI ACGT 2 cut(s) 135, 263
TaqI TCGA 6 cut(s) 157, 524, 655, 790, 962, 1284
TatI WGTACW 3 cut(s) 420, 561, 1015
TfiI GAWTC 7 cut(s) 280, 608, 726, 837, 1404, 1415, 1502
Tru1I TTAA 4 cut(s) 782, 825, 1088, 1097
Tru9I TTAA 4 cut(s) 782, 825, 1088, 1097
TscAI CASTG 2 cut(s) 212, 893
TseFI GTSAC 1 cut(s) 708
TseI GCWGC 1 cut(s) 635
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 5 cut(s) 349, 718, 1223, 1290, 1417
TspGWI ACGGA 2 cut(s) 342, 591
TspRI CASTG 2 cut(s) 212, 893
Van91I CCANNNNNTGG 1 cut(s) 675
VneI GTGCAC 1 cut(s) 1349
VpaK11BI GGWCC 1 cut(s) 757
XagI CCTNNNNNAGG 1 cut(s) 577
XapI RAATTY 3 cut(s) 1031, 1154, 1457
XbaI TCTAGA 2 cut(s) 611, 1375
XcmI CCANNNNNNNNNTGG 2 cut(s) 204, 1207
XspI CTAG 5 cut(s) 116, 612, 1019, 1376, 1532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.