Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009714

Physical Location & Seq

Genomic Coordinates Reverse (-)

26846574 .. 26849774

Gene Structure 3201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG167300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGGAGCCCGGCCAAATGCCCATATACCCCCAACAAATCCAAATACCACCCACCTTCATACCCATACCCGCCTCCCAACCCGCGCACCTGCCCTCCATGAAGCGCCGCCGCGACGACGATTTTCCGCCGATGCAAATCGGGCCGGAACCCCTGGACCCAGCCCCAAAGCGCCGGGCCAAGGCCCAAGACGTCATCTTCAGAGTCGTGGTCCCGTCCAGACAGATCGGCAAGGTCATCGGCAAAGAAGGCTGCCGAATCCAGAAGATTCGTGAAGACTCCAAGGCCACCATCAAAATCGCCGACGCCATAGCTAGACACGAGGAGCGTGTGATTATAATAAGCTCAAAGGATAGTGATGAAGGTACTACTGATGCCGAGAATGCGCTGCAGCAAATAGCTGGCTTAATTCTTAAGGATGATGAGAATGGTACTGAGGCGGCAAAAGTTGGTGCAGGACATGTGGCTGCAAATACAATAAGACTTTTGATTGCTGGTTCCCAAGCAGGTTCTTTAATTGGGATGTCTGGTCAGAATATTGAGAAACTGAGGAACTCCTCTGGGGCCACAATCACAATCCTTGCTCCAAGCCAGTTGCCTTTGTGTGCTTCTGCCCATGAATCTGATCGAGTGGTACAGATATCAGGTGATGTCCCTGCTGTTCAGAAAGGTCTGGAGGAGATTGGTTGTCAACTAAGAGAAAACCCGCCTCGGCAAGTGATTTCTATCAGTCCCGCCTATAACTATACAGCAATTAGGCCACCTCAAGTTCAACCATACATGGACCCAACTTCAGCTGAATATATAACTTTCGAGATGTTGATATCGGAAACAATGGTTGGTGGGTTGATTGGTAGATGCGGCTCCAACATTTCAAGGATCAGAAATGAGTCTGGCGCAATGATCAAGGTTTATGGTGGGAAAGGTGAACAAAAGCATAGGCAAATTCAGTTTTGTGGTAATCCTCAGCAGGTGGCATTGGCAAAGCAGCGGGTTGATGAGTACATCTACTCCCAGTTGATACAACAAGCTGGTGCTCAACAGACAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

350

Amino Acids

38.0

Weight (kDa)

8.21

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	67 - 133	1.2e-11	KH domain
KH_1	PF00013	159 - 228	1.6e-12	KH domain
KH_1	PF00013	270 - 333	7.8e-14	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750 FvH4_7g09750
malus_domestica	MD00G1041200.v1.1
prunus_persica	Prupe.2G125700_v2.0.a1
pyrus_communis	pycom02g18240
rosa_chinensis	RchiOBHm_Chr1g0346751
rosa_laevigata	RLG00000028782
rosa_multiflora	Rmu_sc0003232.1_g000006
rosa_roxburghii	Rroxscaffold_4G00308410
rosa_rugosa	Rorug01G0182500 Rorug01G0182600
rosa_samantha	Rh1AG201100 Rh1BG167300 Rh1CG185800 Rh1DG198100 Rh4BG074300 Rh5DG368600
rosa_wichuraiana	Rw1G016850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AarI	CACCTGC	2 cut(s)	99, 961
AatII	GACGTC	1 cut(s)	195
Acc36I	ACCTGC	3 cut(s)	99, 497, 961
AccII	CGCG	2 cut(s)	86, 114
AclWI	GGATC	1 cut(s)	887
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	945
AcuI	CTGAAG	2 cut(s)	184, 777
AcyI	GRCGYC	2 cut(s)	192, 306
AfaI	GTAC	4 cut(s)	367, 433, 636, 1004
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflII	CTTAAG	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	773, 876
AjnI	CCWGG	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	822, 854
AluBI	AGCT	5 cut(s)	314, 345, 401, 797, 1031
AluI	AGCT	5 cut(s)	314, 345, 401, 797, 1031
Alw21I	GWGCWC	1 cut(s)	1039
AlwI	GGATC	1 cut(s)	887
AoxI	GGCC	7 cut(s)	13, 143, 177, 183, 285, 564, 758
ApeKI	GCWGC	5 cut(s)	252, 388, 391, 467, 988
ApoI	RAATTY	1 cut(s)	945
AspLEI	GCGC	5 cut(s)	88, 108, 174, 388, 899
AspS9I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
AsuC2I	CCSGG	2 cut(s)	12, 176
AsuHPI	GGTGA	2 cut(s)	659, 938
AvaII	GGWCC	3 cut(s)	157, 211, 784
BanII	GRGCYC	1 cut(s)	12
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	1039
BbvCI	CCTCAGC	1 cut(s)	966
BbvI	GCAGC	5 cut(s)	239, 375, 403, 454, 1000
BccI	CCATC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	155
BclI	TGATCA	1 cut(s)	903
BcnI	CCSGG	2 cut(s)	12, 176
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	389
BfoI	RGCGCY	2 cut(s)	109, 175
BfrI	CTTAAG	1 cut(s)	413
BfuAI	ACCTGC	3 cut(s)	99, 497, 961
BisI	GCNGC	9 cut(s)	109, 112, 253, 389, 392, 441, 468, 862, 989
BlsI	GCNGC	9 cut(s)	110, 113, 254, 390, 393, 442, 469, 863, 990
Bme1390I	CCNGG	3 cut(s)	12, 155, 176
Bme18I	GGWCC	3 cut(s)	157, 211, 784
BmgT120I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
BmiI	GGNNCC	8 cut(s)	9, 150, 159, 213, 499, 565, 786, 865
BmrFI	CCNGG	3 cut(s)	12, 155, 176
BmrI	ACTGGG	1 cut(s)	1009
BmsI	GCATC	3 cut(s)	123, 364, 848
BmuI	ACTGGG	1 cut(s)	1009
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	1 cut(s)	750
BpuMI	CCSGG	2 cut(s)	12, 176
BsaBI	GATNNNNATC	2 cut(s)	137, 725
BsaHI	GRCGYC	2 cut(s)	192, 306
BsaJI	CCNNGG	4 cut(s)	153, 180, 282, 710
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 995, 1025
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	592, 1015
Bse3DI	GCAATG	1 cut(s)	906
Bse8I	GATNNNNATC	2 cut(s)	137, 725
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	4 cut(s)	153, 180, 282, 710
BseGI	GGATG	2 cut(s)	424, 528
BseJI	GATNNNNATC	2 cut(s)	137, 725
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	3 cut(s)	426, 539, 980
BseNI	ACTGG	2 cut(s)	592, 1015
BseRI	GAGGAG	3 cut(s)	338, 547, 692
BseXI	GCAGC	5 cut(s)	239, 375, 403, 454, 1000
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	2 cut(s)	86, 114
BshFI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
BsiHKAI	GWGCWC	1 cut(s)	1039
BsiSI	CCGG	3 cut(s)	12, 146, 175
BslFI	GGGAC	3 cut(s)	197, 638, 717
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmFI	GGGAC	3 cut(s)	197, 638, 717
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
Bsp1286I	GDGCHC	2 cut(s)	12, 1039
Bsp143I	GATC	4 cut(s)	225, 625, 879, 903
BspANI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
BspCNI	CTCAG	3 cut(s)	427, 540, 979
BspFNI	CGCG	2 cut(s)	86, 114
BspLI	GGNNCC	8 cut(s)	9, 150, 159, 213, 499, 565, 786, 865
BspMAI	CTGCAG	1 cut(s)	393
BspMI	ACCTGC	3 cut(s)	99, 497, 961
BspPI	GGATC	1 cut(s)	887
BspTI	CTTAAG	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	906
BsrI	ACTGG	2 cut(s)	592, 1015
BssECI	CCNNGG	4 cut(s)	153, 180, 282, 710
BssMI	GATC	4 cut(s)	225, 625, 879, 903
BssNI	GRCGYC	2 cut(s)	192, 306
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	2 cut(s)	180, 282
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	155
BstACI	GRCGYC	2 cut(s)	192, 306
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	4 cut(s)	435, 548, 695, 966
BstF5I	GGATG	2 cut(s)	424, 528
BstFNI	CGCG	2 cut(s)	86, 114
BstH2I	RGCGCY	2 cut(s)	109, 175
BstHHI	GCGC	5 cut(s)	88, 108, 174, 388, 899
BstKTI	GATC	4 cut(s)	228, 628, 882, 906
BstMBI	GATC	4 cut(s)	225, 625, 879, 903
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 249, 383
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	10, 153, 174
BstSFI	CTRYAG	1 cut(s)	389
BstUI	CGCG	2 cut(s)	86, 114
BstV1I	GCAGC	5 cut(s)	239, 375, 403, 454, 1000
BstV2I	GAAGAC	1 cut(s)	282
BsuRI	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
BtsCI	GGATG	2 cut(s)	424, 528
BveI	ACCTGC	3 cut(s)	99, 497, 961
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	5 cut(s)	88, 108, 174, 388, 899
Cfr13I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	4 cut(s)	366, 432, 635, 1003
CviAII	CATG	4 cut(s)	100, 461, 617, 781
CviQI	GTAC	4 cut(s)	366, 432, 635, 1003
DdeI	CTNAG	4 cut(s)	435, 548, 695, 966
DpnI	GATC	4 cut(s)	227, 627, 881, 905
DpnII	GATC	4 cut(s)	225, 625, 879, 903
EaeI	YGGCCR	1 cut(s)	13
EciI	GGCGGA	2 cut(s)	20, 117
Eco130I	CCWWGG	2 cut(s)	180, 282
Eco24I	GRGCYC	1 cut(s)	12
Eco32I	GATATC	2 cut(s)	642, 825
Eco47I	GGWCC	3 cut(s)	157, 211, 784
Eco57I	CTGAAG	2 cut(s)	184, 777
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	2 cut(s)	642, 825
EcoT14I	CCWWGG	2 cut(s)	180, 282
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	2 cut(s)	180, 282
FaeI	CATG	4 cut(s)	103, 464, 620, 784
FaqI	GGGAC	3 cut(s)	197, 638, 717
FatI	CATG	4 cut(s)	99, 460, 616, 780
FauI	CCCGC	5 cut(s)	79, 91, 714, 742, 984
FbaI	TGATCA	1 cut(s)	903
Fnu4HI	GCNGC	9 cut(s)	109, 112, 253, 389, 392, 441, 468, 862, 989
FokI	GGATG	2 cut(s)	431, 535
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	9 cut(s)	109, 112, 253, 389, 392, 441, 468, 862, 989
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	5 cut(s)	87, 107, 173, 387, 898
GluI	GCNGC	9 cut(s)	109, 112, 253, 389, 392, 441, 468, 862, 989
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	695
HaeII	RGCGCY	2 cut(s)	109, 175
HaeIII	GGCC	7 cut(s)	15, 145, 179, 185, 287, 566, 760
HapII	CCGG	3 cut(s)	12, 146, 175
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	5 cut(s)	88, 108, 174, 388, 899
Hin1I	GRCGYC	2 cut(s)	192, 306
Hin1II	CATG	4 cut(s)	103, 464, 620, 784
Hin6I	GCGC	5 cut(s)	86, 106, 172, 386, 897
HinP1I	GCGC	5 cut(s)	86, 106, 172, 386, 897
HincII	GTYRAC	1 cut(s)	692
HindII	GTYRAC	1 cut(s)	692
HinfI	GANTC	6 cut(s)	204, 258, 268, 278, 620, 890
HpaII	CCGG	3 cut(s)	12, 146, 175
HphI	GGTGA	2 cut(s)	659, 938
Hpy166II	GTNNAC	2 cut(s)	692, 929
Hpy188I	TCNGA	6 cut(s)	203, 534, 625, 666, 829, 884
Hpy188III	TCNNGA	5 cut(s)	219, 262, 272, 674, 814
Hpy8I	GTNNAC	2 cut(s)	692, 929
Hpy99I	CGWCG	3 cut(s)	119, 122, 308
HpyAV	CCTTC	3 cut(s)	67, 242, 356
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	136, 391, 455, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 249, 383
HpyF3I	CTNAG	4 cut(s)	435, 548, 695, 966
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	192, 306
Hsp92II	CATG	4 cut(s)	103, 464, 620, 784
HspAI	GCGC	5 cut(s)	86, 106, 172, 386, 897
Ksp22I	TGATCA	1 cut(s)	903
Kzo9I	GATC	4 cut(s)	225, 625, 879, 903
LmnI	GCTCC	4 cut(s)	7, 325, 589, 869
Lsp1109I	GCAGC	5 cut(s)	239, 375, 403, 454, 1000
LweI	GCATC	3 cut(s)	123, 364, 848
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	192
MalI	GATC	4 cut(s)	227, 627, 881, 905
MboI	GATC	4 cut(s)	225, 625, 879, 903
MboII	GAAGA	3 cut(s)	190, 277, 287
MhlI	GDGCHC	2 cut(s)	12, 1039
MluCI	AATT	4 cut(s)	408, 516, 753, 945
MlyI	GAGTC	3 cut(s)	213, 272, 899
MmeI	TCCRAC	1 cut(s)	891
MseI	TTAA	3 cut(s)	407, 414, 515
MspA1I	CMGCKG	2 cut(s)	797, 991
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	3 cut(s)	12, 146, 175
MspR9I	CCNGG	3 cut(s)	12, 155, 176
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	2 cut(s)	86, 114
MwoI	GCNNNNNNNGC	3 cut(s)	142, 249, 383
NciI	CCSGG	2 cut(s)	12, 176
NdeII	GATC	4 cut(s)	225, 625, 879, 903
NlaIII	CATG	4 cut(s)	103, 464, 620, 784
NlaIV	GGNNCC	8 cut(s)	9, 150, 159, 213, 499, 565, 786, 865
NmeAIII	GCCGAG	2 cut(s)	403, 691
NspI	RCATGY	1 cut(s)	464
PaqCI	CACCTGC	2 cut(s)	99, 961
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	258, 268, 620
PkrI	GCNGC	9 cut(s)	110, 113, 254, 390, 393, 442, 469, 863, 990
PleI	GAGTC	3 cut(s)	212, 272, 898
PpsI	GAGTC	3 cut(s)	212, 272, 898
PscI	ACATGT	1 cut(s)	460
PsiI	TTATAA	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	8 cut(s)	9, 150, 159, 213, 499, 565, 786, 865
PspPI	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
PstI	CTGCAG	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	4 cut(s)	367, 433, 636, 1004
RsaNI	GTAC	4 cut(s)	366, 432, 635, 1003
SaqAI	TTAA	3 cut(s)	407, 414, 515
SatI	GCNGC	9 cut(s)	109, 112, 253, 389, 392, 441, 468, 862, 989
Sau3AI	GATC	4 cut(s)	225, 625, 879, 903
Sau96I	GGNCC	7 cut(s)	143, 157, 177, 184, 211, 564, 784
SchI	GAGTC	3 cut(s)	213, 272, 899
ScrFI	CCNGG	3 cut(s)	12, 155, 176
SduI	GDGCHC	2 cut(s)	12, 1039
SfaNI	GCATC	3 cut(s)	123, 364, 848
SfcI	CTRYAG	1 cut(s)	389
SinI	GGWCC	3 cut(s)	157, 211, 784
SmlI	CTYRAG	2 cut(s)	413, 765
SmoI	CTYRAG	2 cut(s)	413, 765
Sse9I	AATT	4 cut(s)	408, 516, 753, 945
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	3 cut(s)	10, 153, 174
StyI	CCWWGG	2 cut(s)	180, 282
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	628, 813
TasI	AATT	4 cut(s)	408, 516, 753, 945
TatI	WGTACW	1 cut(s)	1002
TauI	GCSGC	4 cut(s)	111, 114, 443, 864
TfiI	GAWTC	3 cut(s)	258, 268, 620
Tru1I	TTAA	3 cut(s)	407, 414, 515
Tru9I	TTAA	3 cut(s)	407, 414, 515
TseI	GCWGC	5 cut(s)	252, 388, 391, 467, 988
TspDTI	ATGAA	4 cut(s)	49, 116, 375, 633
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	3 cut(s)	157, 211, 784
XapI	RAATTY	1 cut(s)	945
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	1 cut(s)	315
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.