Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010188

Physical Location & Seq

Genomic Coordinates Reverse (-)

9444643 .. 9445947

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGATTGTTAATGAGTTCTATGGGCCAAGGGTCCGCAAAGATGATCAGTTTTGCAATGGGAACAGTGTACCAGCAGTTTATAAATGAGGAGGACACAACTTTTGACCAGTTTCACGCTGCCATGCTTGATGTTTTCACCACTTTTAATGCTGCTATGCCCGGTAGACACTACGATGCGCCCCGACTGAAGGAAGTAGAGGCTTTCTTCGAAGATTGGATAAAGGCCGACACGAATGAAAAAAAAGAGAAATTCATTGAATTTATGAACAAGAGTGTGAAACCCAGCCAGGCTGATCCCACTACCTTGTTCGCCGGAATAGTAACACCTCCAGCAGCCTTGGCTGCTAAAAAAGCTGGGGAGACTCTTCCCCAGCTTAAAATGATCAAGAACGTCCCAGACGTCCTTTTCGTGCCAACGGCAACAGTAATAGCACTCATAACTGTAAAGATCTCCAGAAGAATGTTCATGACGAAACTAGCAACAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.14

Weight (kDa)

6.75

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37445 AT4G37445
fragaria_vesca	FvH4_7g09940 FvH4_7g09940 FvH4_7g09940
malus_domestica	MD07G1104600.v1.1 MD07G1105300.v1.1
prunus_persica	Prupe.2G128200_v2.0.a1 Prupe.2G128200_v2.0.a1
pyrus_communis	pycom07g09050
rosa_chinensis	RchiOBHm_Chr1g0347501 RchiOBHm_Chr1g0347531
rosa_multiflora	Rmu_ssc0000280.1_g000004
rosa_roxburghii	Rroxscaffold_4G00307750
rosa_rugosa	Rorug01G0187400
rosa_samantha	Rh1AG204600 Rh1BG170400 Rh1CG189700 Rh1DG200700
rosa_wichuraiana	Rw0G013620 Rw1G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AatII	GACGTC	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	2 cut(s)	251, 260
AcuI	CTGAAG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	2 cut(s)	356, 376
AluI	AGCT	2 cut(s)	356, 376
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	25, 225
ApeKI	GCWGC	4 cut(s)	119, 152, 335, 344
ApoI	RAATTY	2 cut(s)	251, 260
ArsI	GACNNNNNNTTYG	4 cut(s)	86, 118, 392, 424
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	25, 33
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	130
AsuII	TTCGAA	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	106, 139, 331, 347
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	1 cut(s)	290
BclI	TGATCA	2 cut(s)	45, 384
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	479
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	4 cut(s)	120, 153, 336, 345
BlsI	GCNGC	4 cut(s)	121, 154, 337, 346
Bme1390I	CCNGG	2 cut(s)	162, 290
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	25, 33
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	162, 290
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	2 cut(s)	315, 439
Bpu14I	TTCGAA	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	28, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	28, 339
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	106, 139, 331, 347
BseYI	CCCAGC	3 cut(s)	284, 356, 372
BshFI	GGCC	2 cut(s)	27, 227
BsiSI	CCGG	2 cut(s)	162, 315
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	27, 227
Bsp119I	TTCGAA	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	45, 295, 384, 450
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	27, 227
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	28, 339
BssMI	GATC	4 cut(s)	45, 295, 384, 450
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	28, 339
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	3 cut(s)	67, 427, 445
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	4 cut(s)	48, 298, 387, 453
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	4 cut(s)	45, 295, 384, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 344, 353
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	160, 288
BstV1I	GCAGC	4 cut(s)	106, 139, 331, 347
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	27, 227
BtsIMutI	CAGTG	1 cut(s)	72
CciI	TCATGA	1 cut(s)	468
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	25, 33
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	2 cut(s)	124, 469
CviJI	RGCY	9 cut(s)	27, 203, 227, 288, 293, 338, 344, 356, 376
CviKI_1	RGCY	9 cut(s)	27, 203, 227, 288, 293, 338, 344, 356, 376
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	4 cut(s)	47, 297, 386, 452
DpnII	GATC	4 cut(s)	45, 295, 384, 450
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	28, 339
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	28, 339
ErhI	CCWWGG	2 cut(s)	28, 339
FaeI	CATG	2 cut(s)	127, 472
FaiI	YATR	7 cut(s)	23, 83, 125, 158, 266, 440, 470
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	2 cut(s)	123, 468
FbaI	TGATCA	2 cut(s)	45, 384
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	120, 153, 336, 345
Fsp4HI	GCNGC	4 cut(s)	120, 153, 336, 345
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	4 cut(s)	120, 153, 336, 345
GsaI	CCCAGC	3 cut(s)	288, 360, 376
GsuI	CTGGAG	2 cut(s)	315, 439
HaeIII	GGCC	2 cut(s)	27, 227
HapII	CCGG	2 cut(s)	162, 315
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	127, 472
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	2 cut(s)	162, 315
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	70, 167
Hpy188III	TCNNGA	3 cut(s)	388, 456, 469
Hpy8I	GTNNAC	2 cut(s)	70, 167
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	3 cut(s)	67, 427, 445
HpyCH4IV	ACGT	2 cut(s)	393, 402
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 344, 353
HpySE526I	ACGT	2 cut(s)	393, 402
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	127, 472
HspAI	GCGC	1 cut(s)	179
Ksp22I	TGATCA	2 cut(s)	45, 384
Kzo9I	GATC	4 cut(s)	45, 295, 384, 450
Lsp1109I	GCAGC	4 cut(s)	106, 139, 331, 347
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	393, 402
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	47, 297, 386, 452
MboI	GATC	4 cut(s)	45, 295, 384, 450
MboII	GAAGA	4 cut(s)	199, 224, 359, 471
MflI	RGATCY	1 cut(s)	450
MluCI	AATT	2 cut(s)	251, 260
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	4 cut(s)	82, 85, 193, 339
MseI	TTAA	3 cut(s)	11, 147, 378
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	2 cut(s)	162, 315
MspR9I	CCNGG	2 cut(s)	162, 290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	341, 344, 353
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	45, 295, 384, 450
NlaIII	CATG	2 cut(s)	127, 472
NlaIV	GGNNCC	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	210
PagI	TCATGA	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	2 cut(s)	399, 408
PkrI	GCNGC	4 cut(s)	121, 154, 337, 346
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	288
PspFI	CCCAGC	3 cut(s)	284, 356, 372
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	2 cut(s)	25, 33
PsuI	RGATCY	1 cut(s)	450
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	11, 147, 378
SatI	GCNGC	4 cut(s)	120, 153, 336, 345
Sau3AI	GATC	4 cut(s)	45, 295, 384, 450
Sau96I	GGNCC	2 cut(s)	25, 33
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	162, 290
SetI	ASST	6 cut(s)	308, 331, 358, 378, 396, 405
SfaNI	GCATC	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	251, 260
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	2 cut(s)	160, 288
StyI	CCWWGG	2 cut(s)	28, 339
TaaI	ACNGT	3 cut(s)	67, 427, 445
TaiI	ACGT	2 cut(s)	396, 405
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	251, 260
Tru1I	TTAA	3 cut(s)	11, 147, 378
Tru9I	TTAA	3 cut(s)	11, 147, 378
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	4 cut(s)	119, 152, 335, 344
TspDTI	ATGAA	4 cut(s)	244, 252, 281, 457
TspRI	CASTG	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	2 cut(s)	251, 260
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	1 cut(s)	479
ZraI	GACGTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.