RchiOBHm_Chr1g0347501

BEST Arabidopsis thaliana protein match is Calcium-binding EF hand family protein (TAIR AT1G64850.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010188
Physical Location & Seq
Reverse (-)
40097614 .. 40098759
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57360

Sequence Viewer

Length: 483 bp
ATGGGATTGTTAATGAGTTCCATGTCCCTAGGGTCCGCAAAGATGATCAATTATGCAATGGAACCGGTGTATGAAAAGTTTATACAGAATTCAGATACAGAGTTTGACGAGTTTCACGCTGCCATGCTTGGTGTTTGCAGCGCATTAAATGCTGCTATGCCCGGTAAACACTACAATGTGCCCGGACTGGAGGAAGTAAAGGAATTTCACAGTACATGGAACAACTTACCGACTCAAAAAAAAAAGAGGGAGCAATTCATCCAGTTTGTGAAGGATAATGTGAGAGTTAACCAGGCTGATACCGCTACCTTGTTGACAGGAGTACTGGCGCCTCCAGGGGCCATGGCTGCTAAAAAAGCTGGGGAGAGTCTTCCCCAGCTGAAAATGATCAAGAACGTCCCGGACATCCTCTTCGTGCCGACGGCAACAGTAGTAGCACTCATTACTGTAAGGTTCTCCAAAAGACTTTTCATGCGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

9.24

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7874 PF25284 20 - 150 1.6e-06 Family of unknown function (DUF7874)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AciI CCGC 2 cut(s) 36, 303
AcsI RAATTY 2 cut(s) 88, 203
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 2 cut(s) 214, 324
AgeI ACCGGT 1 cut(s) 64
AjnI CCWGG 2 cut(s) 291, 334
AjuI GAANNNNNNNTTGG 1 cut(s) 452
AluBI AGCT 3 cut(s) 359, 379, 480
AluI AGCT 3 cut(s) 359, 379, 480
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 4 cut(s) 119, 138, 152, 347
ApoI RAATTY 2 cut(s) 88, 203
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
AsiGI ACCGGT 1 cut(s) 64
AspA2I CCTAGG 1 cut(s) 28
AspLEI GCGC 2 cut(s) 143, 331
AspS9I GGNCC 2 cut(s) 33, 339
AsuC2I CCSGG 3 cut(s) 162, 183, 401
AvaII GGWCC 1 cut(s) 33
AvrII CCTAGG 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 362
BbvI GCAGC 4 cut(s) 106, 139, 150, 334
BceAI ACGGC 1 cut(s) 438
BciT130I CCWGG 2 cut(s) 293, 336
BclI TGATCA 2 cut(s) 45, 387
BcnI CCSGG 3 cut(s) 162, 183, 401
BfaI CTAG 2 cut(s) 29, 481
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 4 cut(s) 120, 139, 153, 348
BlnI CCTAGG 1 cut(s) 28
BlsI GCNGC 4 cut(s) 121, 140, 154, 349
BmcAI AGTACT 1 cut(s) 324
Bme1390I CCNGG 5 cut(s) 162, 183, 293, 336, 401
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 2 cut(s) 33, 339
BmiI GGNNCC 4 cut(s) 34, 63, 330, 340
BmrFI CCNGG 5 cut(s) 162, 183, 293, 336, 401
BpiI GAAGAC 1 cut(s) 362
BpmI CTGGAG 2 cut(s) 209, 318
BpuMI CCSGG 3 cut(s) 162, 183, 401
BsaHI GRCGYC 1 cut(s) 329
BsaJI CCNNGG 3 cut(s) 28, 335, 342
BsaWI WCCGGW 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 3 cut(s) 192, 262, 330
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 2 cut(s) 293, 336
BseDI CCNNGG 3 cut(s) 28, 335, 342
BseGI GGATG 2 cut(s) 258, 405
BseMI GCAATG 1 cut(s) 63
BseNI ACTGG 3 cut(s) 192, 262, 330
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 4 cut(s) 106, 139, 150, 334
BseYI CCCAGC 2 cut(s) 359, 375
BshFI GGCC 1 cut(s) 341
BshNI GGYRCC 1 cut(s) 328
BshTI ACCGGT 1 cut(s) 64
BsiSI CCGG 4 cut(s) 65, 162, 183, 401
BslFI GGGAC 2 cut(s) 10, 383
BsmFI GGGAC 2 cut(s) 10, 383
BsnI GGCC 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 45, 387
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 2 cut(s) 36, 303
BspANI GGCC 1 cut(s) 341
BspLI GGNNCC 4 cut(s) 34, 63, 330, 340
BspT107I GGYRCC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 3 cut(s) 192, 262, 330
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 28, 335, 342
BssMI GATC 2 cut(s) 45, 387
BssNI GRCGYC 1 cut(s) 329
BssT1I CCWWGG 2 cut(s) 28, 342
Bst2UI CCWGG 2 cut(s) 293, 336
Bst4CI ACNGT 3 cut(s) 212, 430, 448
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 258, 405
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 2 cut(s) 143, 331
BstKTI GATC 2 cut(s) 48, 390
BstMBI GATC 2 cut(s) 45, 387
BstMWI GCNNNNNNNGC 4 cut(s) 149, 302, 347, 356
BstNI CCWGG 2 cut(s) 293, 336
BstSCI CCNGG 5 cut(s) 160, 181, 291, 334, 399
BstSLI GKGCMC 1 cut(s) 183
BstV1I GCAGC 4 cut(s) 106, 139, 150, 334
BstV2I GAAGAC 1 cut(s) 362
BsuRI GGCC 1 cut(s) 341
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 258, 405
CfoI GCGC 2 cut(s) 143, 331
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 33, 339
Csp6I GTAC 2 cut(s) 213, 323
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 5 cut(s) 22, 124, 216, 343, 472
CviJI RGCY 6 cut(s) 296, 341, 347, 359, 379, 480
CviKI_1 RGCY 6 cut(s) 296, 341, 347, 359, 379, 480
CviQI GTAC 2 cut(s) 213, 323
DinI GGCGCC 1 cut(s) 330
DpnI GATC 2 cut(s) 47, 389
DpnII GATC 2 cut(s) 45, 387
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Eco130I CCWWGG 2 cut(s) 28, 342
Eco47I GGWCC 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 291, 334
EcoT14I CCWWGG 2 cut(s) 28, 342
EgeI GGCGCC 1 cut(s) 330
EheI GGCGCC 1 cut(s) 330
ErhI CCWWGG 2 cut(s) 28, 342
FaeI CATG 5 cut(s) 25, 127, 219, 346, 475
FaiI YATR 9 cut(s) 23, 54, 72, 83, 125, 158, 217, 344, 473
FaqI GGGAC 2 cut(s) 10, 383
FatI CATG 5 cut(s) 21, 123, 215, 342, 471
FbaI TGATCA 2 cut(s) 45, 387
Fnu4HI GCNGC 4 cut(s) 120, 139, 153, 348
FokI GGATG 2 cut(s) 245, 392
Fsp4HI GCNGC 4 cut(s) 120, 139, 153, 348
FspBI CTAG 2 cut(s) 29, 481
GlaI GCGC 2 cut(s) 142, 330
GluI GCNGC 4 cut(s) 120, 139, 153, 348
GsaI CCCAGC 2 cut(s) 363, 379
GsuI CTGGAG 2 cut(s) 209, 318
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 1 cut(s) 341
HapII CCGG 4 cut(s) 65, 162, 183, 401
HhaI GCGC 2 cut(s) 143, 331
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 5 cut(s) 25, 127, 219, 346, 475
Hin6I GCGC 2 cut(s) 141, 329
HinP1I GCGC 2 cut(s) 141, 329
HincII GTYRAC 2 cut(s) 289, 315
HindII GTYRAC 2 cut(s) 289, 315
HinfI GANTC 2 cut(s) 232, 367
HpaI GTTAAC 1 cut(s) 289
HpaII CCGG 4 cut(s) 65, 162, 183, 401
Hpy166II GTNNAC 3 cut(s) 167, 289, 315
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 391
Hpy8I GTNNAC 3 cut(s) 167, 289, 315
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 3 cut(s) 212, 430, 448
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 2 cut(s) 56, 138
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 302, 347, 356
HpySE526I ACGT 1 cut(s) 396
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 5 cut(s) 25, 127, 219, 346, 475
HspAI GCGC 2 cut(s) 141, 329
KasI GGCGCC 1 cut(s) 328
Ksp22I TGATCA 2 cut(s) 45, 387
KspAI GTTAAC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 45, 387
LmnI GCTCC 1 cut(s) 250
Lsp1109I GCAGC 4 cut(s) 106, 139, 150, 334
MaeI CTAG 2 cut(s) 29, 481
MaeII ACGT 1 cut(s) 396
MalI GATC 2 cut(s) 47, 389
MboI GATC 2 cut(s) 45, 387
MboII GAAGA 2 cut(s) 362, 403
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 4 cut(s) 49, 88, 203, 254
Mly113I GGCGCC 1 cut(s) 329
MlyI GAGTC 2 cut(s) 226, 376
MnlI CCTC 4 cut(s) 184, 240, 342, 419
MseI TTAA 3 cut(s) 11, 146, 288
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 4 cut(s) 65, 162, 183, 401
MspR9I CCNGG 5 cut(s) 162, 183, 293, 336, 401
MvaI CCWGG 2 cut(s) 293, 336
MwoI GCNNNNNNNGC 4 cut(s) 149, 302, 347, 356
NarI GGCGCC 1 cut(s) 329
NciI CCSGG 3 cut(s) 162, 183, 401
NcoI CCATGG 1 cut(s) 342
NdeII GATC 2 cut(s) 45, 387
NlaIII CATG 5 cut(s) 25, 127, 219, 346, 475
NlaIV GGNNCC 4 cut(s) 34, 63, 330, 340
PfoI TCCNGGA 1 cut(s) 399
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 4 cut(s) 121, 140, 154, 349
PleI GAGTC 2 cut(s) 226, 375
PluTI GGCGCC 1 cut(s) 332
PpsI GAGTC 2 cut(s) 226, 375
Psp6I CCWGG 2 cut(s) 291, 334
PspFI CCCAGC 2 cut(s) 359, 375
PspGI CCWGG 2 cut(s) 291, 334
PspN4I GGNNCC 4 cut(s) 34, 63, 330, 340
PspPI GGNCC 2 cut(s) 33, 339
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 2 cut(s) 214, 324
RsaNI GTAC 2 cut(s) 213, 323
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 3 cut(s) 11, 146, 288
SatI GCNGC 4 cut(s) 120, 139, 153, 348
Sau3AI GATC 2 cut(s) 45, 387
Sau96I GGNCC 2 cut(s) 33, 339
ScaI AGTACT 1 cut(s) 324
SchI GAGTC 2 cut(s) 226, 376
ScrFI CCNGG 5 cut(s) 162, 183, 293, 336, 401
SduI GDGCHC 1 cut(s) 183
SetI ASST 6 cut(s) 311, 361, 381, 399, 455, 482
SfoI GGCGCC 1 cut(s) 330
SinI GGWCC 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 4 cut(s) 49, 88, 203, 254
SsiI CCGC 2 cut(s) 36, 303
SspDI GGCGCC 1 cut(s) 328
SspMI CTAG 2 cut(s) 29, 481
StyD4I CCNGG 5 cut(s) 160, 181, 291, 334, 399
StyI CCWWGG 2 cut(s) 28, 342
TaaI ACNGT 3 cut(s) 212, 430, 448
TaiI ACGT 1 cut(s) 399
TasI AATT 4 cut(s) 49, 88, 203, 254
TatI WGTACW 2 cut(s) 212, 322
Tru1I TTAA 3 cut(s) 11, 146, 288
Tru9I TTAA 3 cut(s) 11, 146, 288
TseI GCWGC 4 cut(s) 119, 138, 152, 347
TspDTI ATGAA 3 cut(s) 87, 247, 460
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 2 cut(s) 88, 203
XmaJI CCTAGG 1 cut(s) 28
XspI CTAG 2 cut(s) 29, 481
ZrmI AGTACT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.