Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000280.1

Orthogroup ID

OG0010188

Physical Location & Seq

Genomic Coordinates Reverse (-)

19054 .. 20046

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000280.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgtccctagggtccgcaaagatgatcaattatgcaatggaaccggtgtacgacaagtttataaaggagacagttacagagtttgacgagtttcacgctgccatgcttggtgtttgcagcgctttaaatgctgctatgcccggtaaacactacaatgcgcccggactggaggaagtaaagcttttttacggagaatggaaacaagctgaccggcctgaaaaaaagaagctgctattcaccgagtttatgaaaaataatgtgaaaattaaccaggctgatagcgctaccttgttgacaggagtactagcgcctccagcggccatggctgctaaaaaagctggggagagtcttccccagctgaaaatgatcaagaacgtcccagacgtccttttcgtgccgtcggcaacagtagtagcactcattaccgtaaggttctccaaaagacttttcatgcgaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

16.97

Weight (kDa)

9.3

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37445 AT4G37445
fragaria_vesca	FvH4_7g09940 FvH4_7g09940 FvH4_7g09940
malus_domestica	MD07G1104600.v1.1 MD07G1105300.v1.1
prunus_persica	Prupe.2G128200_v2.0.a1 Prupe.2G128200_v2.0.a1
pyrus_communis	pycom07g09050
rosa_chinensis	RchiOBHm_Chr1g0347501 RchiOBHm_Chr1g0347531
rosa_multiflora	Rmu_ssc0000280.1_g000004
rosa_roxburghii	Rroxscaffold_4G00307750
rosa_rugosa	Rorug01G0187400
rosa_samantha	Rh1AG204600 Rh1BG170400 Rh1CG189700 Rh1DG200700
rosa_wichuraiana	Rw0G013620 Rw1G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AatII	GACGTC	1 cut(s)	387
AciI	CCGC	2 cut(s)	15, 317
AcoI	YGGCCR	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	2 cut(s)	50, 303
AfeI	AGCGCT	2 cut(s)	121, 283
AgeI	ACCGGT	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	1 cut(s)	431
AluBI	AGCT	5 cut(s)	181, 206, 229, 338, 358
AluI	AGCT	5 cut(s)	181, 206, 229, 338, 358
Alw26I	GTCTC	1 cut(s)	62
Aor51HI	AGCGCT	2 cut(s)	121, 283
AoxI	GGCC	2 cut(s)	212, 318
ApeKI	GCWGC	5 cut(s)	98, 117, 131, 229, 326
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AsiGI	ACCGGT	1 cut(s)	43
AspA2I	CCTAGG	1 cut(s)	7
AspLEI	GCGC	4 cut(s)	122, 160, 284, 310
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	2 cut(s)	141, 162
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	12
AvrII	CCTAGG	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	341
BbvI	GCAGC	5 cut(s)	85, 118, 129, 216, 313
BceAI	ACGGC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	272
BclI	TGATCA	2 cut(s)	24, 366
BcnI	CCSGG	2 cut(s)	141, 162
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	3 cut(s)	8, 305, 460
BfoI	RGCGCY	3 cut(s)	123, 285, 311
BisI	GCNGC	6 cut(s)	99, 118, 132, 230, 318, 327
BlnI	CCTAGG	1 cut(s)	7
BlsI	GCNGC	6 cut(s)	100, 119, 133, 231, 319, 328
BmcAI	AGTACT	1 cut(s)	303
Bme1390I	CCNGG	3 cut(s)	141, 162, 272
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	2 cut(s)	13, 42
BmrFI	CCNGG	3 cut(s)	141, 162, 272
BpiI	GAAGAC	1 cut(s)	341
BpmI	CTGGAG	2 cut(s)	188, 297
BpuMI	CCSGG	2 cut(s)	141, 162
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	7, 321
BsaWI	WCCGGW	1 cut(s)	43
Bse118I	RCCGGY	2 cut(s)	43, 210
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	7, 321
BseMI	GCAATG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	5 cut(s)	85, 118, 129, 216, 313
BseYI	CCCAGC	2 cut(s)	338, 354
BshFI	GGCC	2 cut(s)	214, 320
BshTI	ACCGGT	1 cut(s)	43
BsiSI	CCGG	4 cut(s)	44, 141, 162, 211
BslFI	GGGAC	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	214, 320
Bsp143I	GATC	2 cut(s)	24, 366
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	2 cut(s)	15, 317
BspANI	GGCC	2 cut(s)	214, 320
BspLI	GGNNCC	2 cut(s)	13, 42
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	2 cut(s)	43, 210
BsrI	ACTGG	1 cut(s)	171
BssAI	RCCGGY	2 cut(s)	43, 210
BssECI	CCNNGG	2 cut(s)	7, 321
BssMI	GATC	2 cut(s)	24, 366
BssNI	GRCGYC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	7, 321
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	73, 409, 427
BstACI	GRCGYC	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	321
BstH2I	RGCGCY	3 cut(s)	123, 285, 311
BstHHI	GCGC	4 cut(s)	122, 160, 284, 310
BstKTI	GATC	2 cut(s)	27, 369
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	24, 366
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 281, 314, 323, 326, 335
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	3 cut(s)	139, 160, 270
BstV1I	GCAGC	5 cut(s)	85, 118, 129, 216, 313
BstV2I	GAAGAC	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	214, 320
BtgI	CCRYGG	1 cut(s)	321
CfoI	GCGC	4 cut(s)	122, 160, 284, 310
Cfr10I	RCCGGY	2 cut(s)	43, 210
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	49, 302
CspAI	ACCGGT	1 cut(s)	43
CviAII	CATG	3 cut(s)	103, 322, 451
CviJI	RGCY	9 cut(s)	181, 206, 214, 229, 275, 320, 326, 338, 358
CviKI_1	RGCY	9 cut(s)	181, 206, 214, 229, 275, 320, 326, 338, 358
CviQI	GTAC	2 cut(s)	49, 302
DpnI	GATC	2 cut(s)	26, 368
DpnII	GATC	2 cut(s)	24, 366
DraI	TTTAAA	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	7, 321
Eco47I	GGWCC	1 cut(s)	12
Eco47III	AGCGCT	2 cut(s)	121, 283
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	7, 321
ErhI	CCWWGG	2 cut(s)	7, 321
FaeI	CATG	3 cut(s)	106, 325, 454
FaiI	YATR	7 cut(s)	33, 62, 104, 137, 248, 323, 452
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	3 cut(s)	102, 321, 450
FbaI	TGATCA	2 cut(s)	24, 366
Fnu4HI	GCNGC	6 cut(s)	99, 118, 132, 230, 318, 327
Fsp4HI	GCNGC	6 cut(s)	99, 118, 132, 230, 318, 327
FspBI	CTAG	3 cut(s)	8, 305, 460
GlaI	GCGC	4 cut(s)	121, 159, 283, 309
GluI	GCNGC	6 cut(s)	99, 118, 132, 230, 318, 327
GsaI	CCCAGC	2 cut(s)	342, 358
GsuI	CTGGAG	2 cut(s)	188, 297
HaeII	RGCGCY	3 cut(s)	123, 285, 311
HaeIII	GGCC	2 cut(s)	214, 320
HapII	CCGG	4 cut(s)	44, 141, 162, 211
HhaI	GCGC	4 cut(s)	122, 160, 284, 310
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	106, 325, 454
Hin6I	GCGC	4 cut(s)	120, 158, 282, 308
HinP1I	GCGC	4 cut(s)	120, 158, 282, 308
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	4 cut(s)	44, 141, 162, 211
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	3 cut(s)	49, 146, 294
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	3 cut(s)	49, 146, 294
Hpy99I	CGWCG	1 cut(s)	403
HpyCH4III	ACNGT	3 cut(s)	73, 409, 427
HpyCH4IV	ACGT	2 cut(s)	375, 384
HpyCH4V	TGCA	2 cut(s)	35, 117
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 281, 314, 323, 326, 335
HpySE526I	ACGT	2 cut(s)	375, 384
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	106, 325, 454
HspAI	GCGC	4 cut(s)	120, 158, 282, 308
Ksp22I	TGATCA	2 cut(s)	24, 366
Kzo9I	GATC	2 cut(s)	24, 366
Lsp1109I	GCAGC	5 cut(s)	85, 118, 129, 216, 313
MaeI	CTAG	3 cut(s)	8, 305, 460
MaeII	ACGT	2 cut(s)	375, 384
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	26, 368
MboI	GATC	2 cut(s)	24, 366
MboII	GAAGA	1 cut(s)	341
MluCI	AATT	2 cut(s)	28, 264
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	2 cut(s)	163, 321
MseI	TTAA	2 cut(s)	125, 267
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	2 cut(s)	317, 358
MspI	CCGG	4 cut(s)	44, 141, 162, 211
MspR9I	CCNGG	3 cut(s)	141, 162, 272
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	6 cut(s)	128, 281, 314, 323, 326, 335
NciI	CCSGG	2 cut(s)	141, 162
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	24, 366
NlaIII	CATG	3 cut(s)	106, 325, 454
NlaIV	GGNNCC	2 cut(s)	13, 42
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 390
PinAI	ACCGGT	1 cut(s)	43
PkrI	GCNGC	6 cut(s)	100, 119, 133, 231, 319, 328
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	2 cut(s)	338, 354
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	13, 42
PspPI	GGNCC	1 cut(s)	12
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	2 cut(s)	50, 303
RsaNI	GTAC	2 cut(s)	49, 302
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	125, 267
SatI	GCNGC	6 cut(s)	99, 118, 132, 230, 318, 327
Sau3AI	GATC	2 cut(s)	24, 366
Sau96I	GGNCC	1 cut(s)	12
ScaI	AGTACT	1 cut(s)	303
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	3 cut(s)	141, 162, 272
SetI	ASST	9 cut(s)	183, 208, 231, 290, 340, 360, 378, 387, 434
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	28, 264
SsiI	CCGC	2 cut(s)	15, 317
SspMI	CTAG	3 cut(s)	8, 305, 460
StyD4I	CCNGG	3 cut(s)	139, 160, 270
StyI	CCWWGG	2 cut(s)	7, 321
TaaI	ACNGT	3 cut(s)	73, 409, 427
TaiI	ACGT	2 cut(s)	378, 387
TasI	AATT	2 cut(s)	28, 264
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	125, 267
Tru9I	TTAA	2 cut(s)	125, 267
TseI	GCWGC	5 cut(s)	98, 117, 131, 229, 326
TspDTI	ATGAA	2 cut(s)	263, 439
TspGWI	ACGGA	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	12
XmaJI	CCTAGG	1 cut(s)	7
XspI	CTAG	3 cut(s)	8, 305, 460
ZraI	GACGTC	1 cut(s)	385
ZrmI	AGTACT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.