Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010188

Physical Location & Seq

Genomic Coordinates Reverse (-)

8240764 .. 8242295

Gene Structure 1532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g09050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGGCTGTCTATGAGTTTCATGGGATTGGGAGGAGGGCTGCCATCCGGCCAGATGCTAAACATTTTAATGGCAACGCTGTACGATCAGTTCATCAAGAAAGATATCCAAAATTTTGAGGAATTCCAGTTCGCCATACTCGATATCTTCAACACTTTTAATTCTTCTCTGCCCGGTAAACACTACGAAGTGCCGTTGCGCAAGGAAATCGAGGATATGTTCGTAAGTTGGAAAAATGCCAAAGTGCAAGACAGGAGGGGCATCTTCATCCAATTCATGAAGGATAATGTAAGGCTAAGCAAGGTCGATAACGCTACCGTGATAACAGGAGTTGTAACGCCGCCAGTAGCCATGGCTGCTAAAAGAGCAGGGGAGAGAGTGCCCCAGCTGAAAATGATCAAGGCCATTCCTGACGTCTTTTTCGTGCCATCAGCGACAGTGTTGGCTCTCATTTCTGTTAAGATTTCCAGAAGAATTTTCACTGCAAAAAAAGCATCTTTGACACACTCCGAACCTGATATCCAGATGAAGACCGAAAACATTGGCGAAGCCAGGGCACCGCAAGGAGGTGCGCCCGCACCATTGGTCATCGGAAATTCCCATGAGCAGCGAGAAATACGCCCCTCTAACCTGCACAGAAGACCTTCGGTCACCGGAAATTCCCATGGGGAGCAAGAAATACGCCCCTCCAATCCGAACAGAAGGTGGTGTTTGACGAAATGCCAAAATGAAGACTGCATCTACTGCGCACGACCTTGTAGCTTTGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.76

Weight (kDa)

9.35

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37445 AT4G37445
fragaria_vesca	FvH4_7g09940 FvH4_7g09940 FvH4_7g09940
malus_domestica	MD07G1104600.v1.1 MD07G1105300.v1.1
prunus_persica	Prupe.2G128200_v2.0.a1 Prupe.2G128200_v2.0.a1
pyrus_communis	pycom07g09050
rosa_chinensis	RchiOBHm_Chr1g0347501 RchiOBHm_Chr1g0347531
rosa_multiflora	Rmu_ssc0000280.1_g000004
rosa_roxburghii	Rroxscaffold_4G00307750
rosa_rugosa	Rorug01G0187400
rosa_samantha	Rh1AG204600 Rh1BG170400 Rh1CG189700 Rh1DG200700
rosa_wichuraiana	Rw0G013620 Rw1G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	417
Acc16I	TGCGCA	2 cut(s)	200, 748
Acc36I	ACCTGC	1 cut(s)	639
AccB1I	GGYRCC	1 cut(s)	556
AciI	CCGC	3 cut(s)	341, 560, 576
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	5 cut(s)	112, 122, 474, 595, 658
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	2 cut(s)	151, 767
AhdI	GACNNNNNGTC	1 cut(s)	647
AjnI	CCWGG	1 cut(s)	551
AloI	GAACNNNNNNTCC	4 cut(s)	113, 145, 504, 536
AluBI	AGCT	2 cut(s)	388, 762
AluI	AGCT	2 cut(s)	388, 762
AoxI	GGCC	2 cut(s)	49, 402
ApeKI	GCWGC	3 cut(s)	40, 356, 607
ApoI	RAATTY	5 cut(s)	112, 122, 474, 595, 658
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
Asp700I	GAANNNNTTC	1 cut(s)	643
AspLEI	GCGC	3 cut(s)	201, 574, 749
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	643
BaeGI	GKGCMC	2 cut(s)	384, 559
BanI	GGYRCC	1 cut(s)	556
BbsI	GAAGAC	3 cut(s)	536, 646, 738
BbvI	GCAGC	3 cut(s)	27, 343, 619
BccI	CCATC	2 cut(s)	52, 436
BceAI	ACGGC	1 cut(s)	178
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	1 cut(s)	553
BclI	TGATCA	1 cut(s)	396
BcnI	CCSGG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	639
BisI	GCNGC	4 cut(s)	41, 341, 357, 608
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	4 cut(s)	42, 342, 358, 609
Bme1390I	CCNGG	2 cut(s)	174, 553
BmeRI	GACNNNNNGTC	1 cut(s)	647
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	2 cut(s)	174, 553
BmsI	GCATC	4 cut(s)	45, 270, 503, 747
BpiI	GAAGAC	3 cut(s)	536, 646, 738
Bpu1102I	GCTNAGC	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	351, 552, 664
BsaWI	WCCGGW	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse1I	ACTGG	2 cut(s)	127, 344
BseBI	CCWGG	1 cut(s)	553
BseDI	CCNNGG	3 cut(s)	351, 552, 664
BseGI	GGATG	2 cut(s)	44, 267
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseNI	ACTGG	2 cut(s)	127, 344
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	2 cut(s)	384, 559
BseXI	GCAGC	3 cut(s)	27, 343, 619
BseYI	CCCAGC	1 cut(s)	384
BsgI	GTGCAG	1 cut(s)	617
BshFI	GGCC	2 cut(s)	51, 404
BshNI	GGYRCC	1 cut(s)	556
BsiSI	CCGG	3 cut(s)	48, 174, 654
BslI	CCNNNNNNNGG	1 cut(s)	566
BsnI	GGCC	2 cut(s)	51, 404
Bsp1286I	GDGCHC	2 cut(s)	384, 559
Bsp143I	GATC	2 cut(s)	85, 396
Bsp1720I	GCTNAGC	1 cut(s)	296
Bsp19I	CCATGG	2 cut(s)	351, 664
BspACI	CCGC	3 cut(s)	341, 560, 576
BspANI	GGCC	2 cut(s)	51, 404
BspHI	TCATGA	2 cut(s)	276, 770
BspLI	GGNNCC	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	639
BspT107I	GGYRCC	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	127, 344
BssECI	CCNNGG	3 cut(s)	351, 552, 664
BssMI	GATC	2 cut(s)	85, 396
BssNI	GRCGYC	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	351, 664
Bst2UI	CCWGG	1 cut(s)	553
Bst4CI	ACNGT	2 cut(s)	319, 439
BstACI	GRCGYC	1 cut(s)	414
BstAPI	GCANNNNNTGC	1 cut(s)	744
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	1 cut(s)	296
BstDSI	CCRYGG	2 cut(s)	351, 664
BstEII	GGTNACC	1 cut(s)	649
BstF5I	GGATG	2 cut(s)	44, 267
BstHHI	GCGC	3 cut(s)	201, 574, 749
BstKTI	GATC	2 cut(s)	88, 399
BstMBI	GATC	2 cut(s)	85, 396
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 365, 491, 744
BstNI	CCWGG	1 cut(s)	553
BstPI	GGTNACC	1 cut(s)	649
BstSCI	CCNGG	2 cut(s)	172, 551
BstSLI	GKGCMC	2 cut(s)	384, 559
BstV1I	GCAGC	3 cut(s)	27, 343, 619
BstV2I	GAAGAC	3 cut(s)	536, 646, 738
BsuRI	GGCC	2 cut(s)	51, 404
BtgI	CCRYGG	2 cut(s)	351, 664
BtsCI	GGATG	2 cut(s)	44, 267
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	444, 480
BveI	ACCTGC	1 cut(s)	639
Cac8I	GCNNGC	1 cut(s)	576
CciI	TCATGA	2 cut(s)	276, 770
CfoI	GCGC	3 cut(s)	201, 574, 749
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	6 cut(s)	22, 277, 352, 602, 665, 771
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	87, 398
DpnII	GATC	2 cut(s)	85, 396
DriI	GACNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	49
Eam1105I	GACNNNNNGTC	1 cut(s)	647
Eco130I	CCWWGG	2 cut(s)	351, 664
Eco32I	GATATC	3 cut(s)	106, 145, 520
Eco91I	GGTNACC	1 cut(s)	649
EcoO65I	GGTNACC	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	551
EcoRV	GATATC	3 cut(s)	106, 145, 520
EcoT14I	CCWWGG	2 cut(s)	351, 664
ErhI	CCWWGG	2 cut(s)	351, 664
FaeI	CATG	6 cut(s)	25, 280, 355, 605, 668, 774
FaiI	YATR	9 cut(s)	14, 23, 137, 218, 278, 353, 603, 666, 772
FatI	CATG	6 cut(s)	21, 276, 351, 601, 664, 770
FauI	CCCGC	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	396
Fnu4HI	GCNGC	4 cut(s)	41, 341, 357, 608
FokI	GGATG	2 cut(s)	31, 254
Fsp4HI	GCNGC	4 cut(s)	41, 341, 357, 608
FspI	TGCGCA	2 cut(s)	200, 748
GlaI	GCGC	3 cut(s)	200, 573, 748
GluI	GCNGC	4 cut(s)	41, 341, 357, 608
GsaI	CCCAGC	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	51, 404
HapII	CCGG	3 cut(s)	48, 174, 654
HhaI	GCGC	3 cut(s)	201, 574, 749
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	6 cut(s)	25, 280, 355, 605, 668, 774
Hin6I	GCGC	3 cut(s)	199, 572, 747
HinP1I	GCGC	3 cut(s)	199, 572, 747
HinfI	GANTC	1 cut(s)	767
HpaII	CCGG	3 cut(s)	48, 174, 654
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	511, 593, 696
Hpy188III	TCNNGA	6 cut(s)	97, 277, 410, 468, 523, 771
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	274, 654, 696
HpyCH4III	ACNGT	2 cut(s)	319, 439
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	4 cut(s)	247, 485, 634, 738
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 365, 491, 744
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	414
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	6 cut(s)	25, 280, 355, 605, 668, 774
HspAI	GCGC	3 cut(s)	199, 572, 747
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	85, 396
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	3 cut(s)	27, 343, 619
LweI	GCATC	4 cut(s)	45, 270, 503, 747
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	334, 649
MalI	GATC	2 cut(s)	87, 398
MboI	GATC	2 cut(s)	85, 396
MboII	GAAGA	7 cut(s)	139, 156, 256, 483, 541, 651, 743
MhlI	GDGCHC	2 cut(s)	384, 559
MluCI	AATT	7 cut(s)	112, 122, 160, 272, 474, 595, 658
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	8 cut(s)	26, 29, 112, 205, 249, 560, 634, 697
MroXI	GAANNNNTTC	1 cut(s)	643
MseI	TTAA	3 cut(s)	68, 159, 459
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	3 cut(s)	48, 174, 654
MspR9I	CCNGG	2 cut(s)	174, 553
MvaI	CCWGG	1 cut(s)	553
MwoI	GCNNNNNNNGC	4 cut(s)	356, 365, 491, 744
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	2 cut(s)	351, 664
NdeII	GATC	2 cut(s)	85, 396
NlaIII	CATG	6 cut(s)	25, 280, 355, 605, 668, 774
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	649
NsbI	TGCGCA	2 cut(s)	200, 748
PagI	TCATGA	2 cut(s)	276, 770
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 420
PdmI	GAANNNNTTC	1 cut(s)	643
PfeI	GAWTC	1 cut(s)	767
PkrI	GCNGC	4 cut(s)	42, 342, 358, 609
Psp6I	CCWGG	1 cut(s)	551
PspEI	GGTNACC	1 cut(s)	649
PspFI	CCCAGC	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	551
PspN4I	GGNNCC	1 cut(s)	558
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	68, 159, 459
SatI	GCNGC	4 cut(s)	41, 341, 357, 608
Sau3AI	GATC	2 cut(s)	85, 396
ScrFI	CCNGG	2 cut(s)	174, 553
SduI	GDGCHC	2 cut(s)	384, 559
SfaNI	GCATC	4 cut(s)	45, 270, 503, 747
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	7 cut(s)	112, 122, 160, 272, 474, 595, 658
SsiI	CCGC	3 cut(s)	341, 560, 576
StyD4I	CCNGG	2 cut(s)	172, 551
StyI	CCWWGG	2 cut(s)	351, 664
TaaI	ACNGT	2 cut(s)	319, 439
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	3 cut(s)	141, 210, 306
TaqII	GACCGA	2 cut(s)	548, 637
TasI	AATT	7 cut(s)	112, 122, 160, 272, 474, 595, 658
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	767
Tru1I	TTAA	3 cut(s)	68, 159, 459
Tru9I	TTAA	3 cut(s)	68, 159, 459
TscAI	CASTG	2 cut(s)	444, 487
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	3 cut(s)	40, 356, 607
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	7 cut(s)	10, 82, 256, 265, 293, 542, 744
TspRI	CASTG	2 cut(s)	444, 487
XapI	RAATTY	5 cut(s)	112, 122, 474, 595, 658
XmnI	GAANNNNTTC	1 cut(s)	643
ZraI	GACGTC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.