Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00612

Orthogroup ID

OG0010188

Physical Location & Seq

Genomic Coordinates Reverse (-)

12280 .. 13178

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGATTGGTAATGAGTTCCATGTCCCTAGGTTATTTTCCTTTTCGTCTCCTTTTCTCATCTTATGGTGGGTCCGCAAAGATGATCAATTATGCAATGGAACCGGTGTACGACAAGTTTATAAAGGAGTCAGTTACAGAGTTTGACGAGTTTCACGCTGCCATGCTTGGTGTTTGCAGCGCTTTAAATGCTGCTATGCCCGGTAAACACTACAATGCGCCCGGACTGGAGGAAGTAAAGAAGGAGCAATTCATCCAGTTTATGAAAAATAATGTGAAAATTAACCAGGCTGATAGCGCTACCTTGTTGACAGGAGTACTAGCGCCTCCAGCGGCCATGGCTGCTAAAAAAGCTGGGGAGAGTCTTCCCCAGCTGAAAATGATCAAGAACGTCCCAGACGTCCTTTTCGTGCCGTCGGCAACAGTAGTAGCACTCATTACCGTAAGGTTCTCCAAAAGACTTTTCATGCGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.37

Weight (kDa)

9.35

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37445 AT4G37445
fragaria_vesca	FvH4_7g09940 FvH4_7g09940 FvH4_7g09940
malus_domestica	MD07G1104600.v1.1 MD07G1105300.v1.1
prunus_persica	Prupe.2G128200_v2.0.a1 Prupe.2G128200_v2.0.a1
pyrus_communis	pycom07g09050
rosa_chinensis	RchiOBHm_Chr1g0347501 RchiOBHm_Chr1g0347531
rosa_multiflora	Rmu_ssc0000280.1_g000004
rosa_roxburghii	Rroxscaffold_4G00307750
rosa_rugosa	Rorug01G0187400
rosa_samantha	Rh1AG204600 Rh1BG170400 Rh1CG189700 Rh1DG200700
rosa_wichuraiana	Rw0G013620 Rw1G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AatII	GACGTC	1 cut(s)	402
AciI	CCGC	2 cut(s)	75, 332
AcoI	YGGCCR	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	2 cut(s)	110, 318
AfeI	AGCGCT	2 cut(s)	181, 298
AgeI	ACCGGT	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	285
AjuI	GAANNNNNNNTTGG	1 cut(s)	446
AluBI	AGCT	2 cut(s)	353, 373
AluI	AGCT	2 cut(s)	353, 373
Alw26I	GTCTC	1 cut(s)	53
Aor51HI	AGCGCT	2 cut(s)	181, 298
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	158, 177, 191, 341
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AsiGI	ACCGGT	1 cut(s)	103
AspA2I	CCTAGG	1 cut(s)	28
AspLEI	GCGC	4 cut(s)	182, 220, 299, 325
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	2 cut(s)	201, 222
AvaII	GGWCC	1 cut(s)	72
AvrII	CCTAGG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	356
BbvI	GCAGC	4 cut(s)	145, 178, 189, 328
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	287
BclI	TGATCA	2 cut(s)	84, 381
BcnI	CCSGG	2 cut(s)	201, 222
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	3 cut(s)	29, 320, 475
BfoI	RGCGCY	3 cut(s)	183, 300, 326
BisI	GCNGC	5 cut(s)	159, 178, 192, 333, 342
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	5 cut(s)	160, 179, 193, 334, 343
BmcAI	AGTACT	1 cut(s)	318
Bme1390I	CCNGG	3 cut(s)	201, 222, 287
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	73, 102
BmrFI	CCNGG	3 cut(s)	201, 222, 287
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	2 cut(s)	248, 312
BpuMI	CCSGG	2 cut(s)	201, 222
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	28, 336
BsaWI	WCCGGW	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	231, 256
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	28, 336
BseGI	GGATG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	231, 256
BseXI	GCAGC	4 cut(s)	145, 178, 189, 328
BseYI	CCCAGC	2 cut(s)	353, 369
BshFI	GGCC	1 cut(s)	335
BshTI	ACCGGT	1 cut(s)	103
BsiSI	CCGG	3 cut(s)	104, 201, 222
BslFI	GGGAC	2 cut(s)	10, 377
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	2 cut(s)	10, 377
BsnI	GGCC	1 cut(s)	335
Bsp143I	GATC	2 cut(s)	84, 381
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	2 cut(s)	75, 332
BspANI	GGCC	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	73, 102
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	231, 256
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	28, 336
BssMI	GATC	2 cut(s)	84, 381
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	2 cut(s)	28, 336
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	424, 442
BstACI	GRCGYC	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	252
BstH2I	RGCGCY	3 cut(s)	183, 300, 326
BstHHI	GCGC	4 cut(s)	182, 220, 299, 325
BstKTI	GATC	2 cut(s)	87, 384
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	84, 381
BstMWI	GCNNNNNNNGC	6 cut(s)	188, 296, 329, 338, 341, 350
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	199, 220, 285
BstV1I	GCAGC	4 cut(s)	145, 178, 189, 328
BstV2I	GAAGAC	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	252
CfoI	GCGC	4 cut(s)	182, 220, 299, 325
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	109, 317
CspAI	ACCGGT	1 cut(s)	103
CviAII	CATG	4 cut(s)	22, 163, 337, 466
CviJI	RGCY	5 cut(s)	290, 335, 341, 353, 373
CviKI_1	RGCY	5 cut(s)	290, 335, 341, 353, 373
CviQI	GTAC	2 cut(s)	109, 317
DpnI	GATC	2 cut(s)	86, 383
DpnII	GATC	2 cut(s)	84, 381
DraI	TTTAAA	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	28, 336
Eco47I	GGWCC	1 cut(s)	72
Eco47III	AGCGCT	2 cut(s)	181, 298
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	2 cut(s)	28, 336
ErhI	CCWWGG	2 cut(s)	28, 336
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	4 cut(s)	25, 166, 340, 469
FaiI	YATR	9 cut(s)	23, 66, 93, 122, 164, 197, 263, 338, 467
FaqI	GGGAC	2 cut(s)	10, 377
FatI	CATG	4 cut(s)	21, 162, 336, 465
FbaI	TGATCA	2 cut(s)	84, 381
Fnu4HI	GCNGC	5 cut(s)	159, 178, 192, 333, 342
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	5 cut(s)	159, 178, 192, 333, 342
FspBI	CTAG	3 cut(s)	29, 320, 475
GlaI	GCGC	4 cut(s)	181, 219, 298, 324
GluI	GCNGC	5 cut(s)	159, 178, 192, 333, 342
GsaI	CCCAGC	2 cut(s)	357, 373
GsuI	CTGGAG	2 cut(s)	248, 312
HaeII	RGCGCY	3 cut(s)	183, 300, 326
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	3 cut(s)	104, 201, 222
HhaI	GCGC	4 cut(s)	182, 220, 299, 325
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	4 cut(s)	25, 166, 340, 469
Hin6I	GCGC	4 cut(s)	180, 218, 297, 323
HinP1I	GCGC	4 cut(s)	180, 218, 297, 323
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	2 cut(s)	128, 361
HpaII	CCGG	3 cut(s)	104, 201, 222
Hpy166II	GTNNAC	3 cut(s)	109, 206, 309
Hpy188III	TCNNGA	1 cut(s)	385
Hpy8I	GTNNAC	3 cut(s)	109, 206, 309
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	2 cut(s)	424, 442
HpyCH4IV	ACGT	2 cut(s)	390, 399
HpyCH4V	TGCA	2 cut(s)	95, 177
HpyF10VI	GCNNNNNNNGC	6 cut(s)	188, 296, 329, 338, 341, 350
HpySE526I	ACGT	2 cut(s)	390, 399
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	25, 166, 340, 469
HspAI	GCGC	4 cut(s)	180, 218, 297, 323
Ksp22I	TGATCA	2 cut(s)	84, 381
Kzo9I	GATC	2 cut(s)	84, 381
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	4 cut(s)	145, 178, 189, 328
MaeI	CTAG	3 cut(s)	29, 320, 475
MaeII	ACGT	2 cut(s)	390, 399
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	86, 383
MboI	GATC	2 cut(s)	84, 381
MboII	GAAGA	1 cut(s)	356
MluCI	AATT	3 cut(s)	88, 248, 279
MlyI	GAGTC	2 cut(s)	137, 370
MnlI	CCTC	2 cut(s)	223, 336
MseI	TTAA	2 cut(s)	185, 282
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	332, 373
MspI	CCGG	3 cut(s)	104, 201, 222
MspR9I	CCNGG	3 cut(s)	201, 222, 287
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	6 cut(s)	188, 296, 329, 338, 341, 350
NciI	CCSGG	2 cut(s)	201, 222
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	2 cut(s)	84, 381
NlaIII	CATG	4 cut(s)	25, 166, 340, 469
NlaIV	GGNNCC	2 cut(s)	73, 102
PcsI	WCGNNNNNNNCGW	2 cut(s)	396, 405
PinAI	ACCGGT	1 cut(s)	103
PkrI	GCNGC	5 cut(s)	160, 179, 193, 334, 343
PleI	GAGTC	2 cut(s)	136, 369
PpsI	GAGTC	2 cut(s)	136, 369
PsiI	TTATAA	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	285
PspFI	CCCAGC	2 cut(s)	353, 369
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	73, 102
PspPI	GGNCC	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	2 cut(s)	110, 318
RsaNI	GTAC	2 cut(s)	109, 317
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	185, 282
SatI	GCNGC	5 cut(s)	159, 178, 192, 333, 342
Sau3AI	GATC	2 cut(s)	84, 381
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	318
SchI	GAGTC	2 cut(s)	137, 370
ScrFI	CCNGG	3 cut(s)	201, 222, 287
SetI	ASST	7 cut(s)	34, 305, 355, 375, 393, 402, 449
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	3 cut(s)	88, 248, 279
SsiI	CCGC	2 cut(s)	75, 332
SspMI	CTAG	3 cut(s)	29, 320, 475
StyD4I	CCNGG	3 cut(s)	199, 220, 285
StyI	CCWWGG	2 cut(s)	28, 336
TaaI	ACNGT	2 cut(s)	424, 442
TaiI	ACGT	2 cut(s)	393, 402
TasI	AATT	3 cut(s)	88, 248, 279
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	185, 282
Tru9I	TTAA	2 cut(s)	185, 282
TseI	GCWGC	4 cut(s)	158, 177, 191, 341
TspDTI	ATGAA	3 cut(s)	241, 278, 454
VpaK11BI	GGWCC	1 cut(s)	72
XmaJI	CCTAGG	1 cut(s)	28
XspI	CTAG	3 cut(s)	29, 320, 475
ZraI	GACGTC	1 cut(s)	400
ZrmI	AGTACT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.